View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_78 (Length: 437)
Name: NF9005_low_78
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_78 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Original strand, 27624058 - 27624449
Alignment:
| Q |
12 |
ggtggtggaggtgctcacaagagttaagagcatagtaacaaaatatgaaattaaaaaggctgcttgcttctttccaaaatggcgtgtttgacaatttaca |
111 |
Q |
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| T |
27624058 |
ggtggtggaggtgctcacaagagttaagagaatagtaacaaaatatgaaattaaaaaggctgcttgcttctttccaaaatggcgtgtttgacaatttaca |
27624157 |
T |
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| Q |
112 |
aagtttgataaaccattaccaaaccaaccatgacagtgccatctcttatactcgtttgctgacnnnnnnnnatttcttggtacaaaatcattttcttact |
211 |
Q |
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| T |
27624158 |
aagtttgataaaccattaccaaaccaaccatgacagtgccatctcttatactcatttgctgacttttttttatttcttggtacaaaatcattttcttact |
27624257 |
T |
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| Q |
212 |
ttaataattaaataaaatacaacagggtcggtcaatattatattatatgcttgtcatgaattaatcattagtatataatatgtgaatcatggtttaagag |
311 |
Q |
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| T |
27624258 |
ttaataattaaataaaatacaacagggtcggtcaatattatattatatgcttgtcatgaattaatcattagtatataatatgtgaatcatggtttaagag |
27624357 |
T |
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| Q |
312 |
aattatttagctaataagttcctcacggactctctatttttgactttggattttcatctcattcatcataagctaccttctcttggttagac |
403 |
Q |
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| T |
27624358 |
aattatttagctaataagttcctcacggactctctatttttgactttggattttcatctcattcatcataagctaccttctcttggttagac |
27624449 |
T |
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