View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_79 (Length: 436)
Name: NF9005_low_79
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 26597179 - 26597357
Alignment:
| Q |
1 |
ggctttctatgaagttactagttgcaataagaaactcaagcgagtatttaaaggacttttcagtctctataaatagtcattattttgttttccttatcgg |
100 |
Q |
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| T |
26597179 |
ggctttctatgaagctaccagttgtagtaagaaactcaagcgagtatttaaaggactttttagtctctataaatagtcattattttgttttccttatcgg |
26597278 |
T |
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| Q |
101 |
taacattataatcatcacgttgttcgctcaaggttctggaagaaacattccaaatgaacaagaatatgatgatatctat |
179 |
Q |
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| T |
26597279 |
taacattataatcatcacgttcttcgctcaaggttctggaagaaacgttccaaatgaacaagaatatgatgatgtctat |
26597357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 286 - 417
Target Start/End: Original strand, 26597464 - 26597595
Alignment:
| Q |
286 |
gaggggtgaagaagagttatagaaggtgtgagagtgaaaatttnnnnnnncaacatcgtgtgttgcaaaggtgtgagagtgagaacaatggaaggaaaaa |
385 |
Q |
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| T |
26597464 |
gaggggtgaagaagagttatagaaggtgtgagagtgaaaatttaaaaaaacaacatcgtgtgttgcaaaggtgtgagagtgagaacaatggaaggaaaaa |
26597563 |
T |
|
| Q |
386 |
cattgaacctgctcatgttgttgaggaggaaa |
417 |
Q |
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| T |
26597564 |
cattgaacctgctcatgttgttaaggaggaaa |
26597595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 26612501 - 26612673
Alignment:
| Q |
3 |
ctttctatgaagttactagttgcaataagaaactcaagcgagtatttaaaggacttttcagtctctataaatagtcattattttgttttccttatcggta |
102 |
Q |
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| T |
26612501 |
ctttctatgaagttaccaattgtggtaagaaactcgagcgagtatttaaaggatatttcagtctttatcaatagccactattttgtctttgttatcggaa |
26612600 |
T |
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| Q |
103 |
acattataatcatcacgttgttcgctcaaggttctggaagaaacattccaaatgaacaagaatatgatgatat |
175 |
Q |
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| T |
26612601 |
acattataatcatcacgctgttcgctcaaggtaatggaaaaaacattccaaaagaacaggaacatgatgatat |
26612673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 26604982 - 26605156
Alignment:
| Q |
1 |
ggctttctatgaagttactagttgcaataagaaactcaagcgagtatttaaaggacttttcagtctctataaatagtcattattttgttttccttatcgg |
100 |
Q |
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|||||||| ||||| ||||||||| | ||||||||||||| |||||||||| |||| |||| ||| | | ||||| |||||||||||||| | ||||| |
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| T |
26604982 |
ggctttctttgaagctactagttgtagtaagaaactcaagtgagtatttaagggacgtttcggtcattgtcaatagccattattttgtttttgtaatcgg |
26605081 |
T |
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| Q |
101 |
taacattataatcatcacgttgttcgctcaaggttctggaagaaacattccaaatgaacaagaatatgatgatat |
175 |
Q |
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| T |
26605082 |
taacgttataatcatcacgttgtttgctcagggttctggaaaaaatgttccaaaagaacatgaacatgatgatat |
26605156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 399
Target Start/End: Original strand, 26612877 - 26612927
Alignment:
| Q |
349 |
tgcaaaggtgtgagagtgagaacaatggaaggaaaaacattgaacctgctc |
399 |
Q |
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| T |
26612877 |
tgcaaagatgtgagagtgagaacagcggaaggaaaaagattgaagctgctc |
26612927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 398
Target Start/End: Original strand, 26605271 - 26605376
Alignment:
| Q |
290 |
ggtgaagaagagttatagaaggtgtgagagtgaaaatttnnnnnnncaacatcgtgtgttgcaaaggtgtgagagtgagaacaatggaaggaaaaacatt |
389 |
Q |
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||||||||||||||||||||||||||||| | | | ||| | || |||||| ||| ||||||||||||||||| |||| |||||||| |||| |
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| T |
26605271 |
ggtgaagaagagttatagaaggtgtgagactaatattttgaagaaacgacgtcgtgtattggaaaggtgtgagagtgag---aatgaaaggaaaatcatt |
26605367 |
T |
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| Q |
390 |
gaacctgct |
398 |
Q |
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||| ||||| |
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| T |
26605368 |
gaagctgct |
26605376 |
T |
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