View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_83 (Length: 424)

Name: NF9005_low_83
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_83
NF9005_low_83
[»] chr4 (3 HSPs)
chr4 (1-415)||(30251516-30251927)
chr4 (126-214)||(29597473-29597562)
chr4 (358-407)||(50655201-50655250)
[»] chr1 (5 HSPs)
chr1 (342-415)||(9644274-9644347)
chr1 (358-415)||(21926538-21926595)
chr1 (175-227)||(36982405-36982457)
chr1 (358-415)||(13297512-13297569)
chr1 (358-407)||(51871122-51871171)
[»] chr3 (2 HSPs)
chr3 (356-415)||(34213065-34213124)
chr3 (359-407)||(41640744-41640792)
[»] chr7 (2 HSPs)
chr7 (358-407)||(33743391-33743440)
chr7 (342-414)||(23177021-23177092)
[»] chr8 (1 HSPs)
chr8 (358-410)||(42241351-42241403)
[»] chr6 (2 HSPs)
chr6 (126-226)||(25084034-25084135)
chr6 (358-410)||(12834034-12834086)
[»] chr5 (1 HSPs)
chr5 (358-415)||(3465421-3465478)
[»] chr2 (1 HSPs)
chr2 (126-154)||(39401182-39401210)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 415
Target Start/End: Complemental strand, 30251927 - 30251516
Alignment:
Q  1 ccttttaaactcttacagcctccctcccatccaaggtatttcttgccctttaagatattcgagtattaaggtatgtcattttctccttcatttaaaagaa 100  Q
    |||||||||||||||  ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  30251927 ccttttaaactctta--gcctccctcccatccaatggatttcttgccctctaagatattcgagtattaaggtatgtcgttttctccttcatttaaaagaa 30251830  T
Q  101 caaaacttttatccaactagattatatgacacgagtcttttttaacttaaccaatgccttgagtttaaattcagcttagacatgtagcaacgaaaaaact 200  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  30251829 caaaacttttatccaactagattatatgacatgagtcttttctaacttgacgaatgccttgagttcaaattcagcttagacatgtagcaacgaaataact 30251730  T
Q  201 cttagtgagagtttgtcatccatttaggtgtcataagactcgagagacaactgcgataacggaggatatccgatttacaccaaaactnnnnnnnnngact 300  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||           | |    
T  30251729 cttagtgagagtttgccatccatttaggtgtcataagattcgagagacagctgcgataacggaggatatccggtttacaccaaaac-aaaaacaaaaaat 30251631  T
Q  301 cattttctttataaatgggtggaatggacttccacagtgacattaggtcttctcttagtttgacatgctgttatttggaccatttggatgtcccgaaacg 400  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||    
T  30251630 cattttctttataaatgggtggattggacttccacagtgacattaggtcttcttttagtttgacatgctgttatttggaccatttggacgtcctgaaacg 30251531  T
Q  401 accttattttctctg 415  Q
    |||||||||||||||    
T  30251530 accttattttctctg 30251516  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 29597473 - 29597562
Alignment:
Q  126 atgacacgagtcttttttaacttaaccaatgccttgagtttaaattcag-cttagacatgtagcaacgaaaaaactcttagtgagagttt 214  Q
    ||||||||||| |||||||||||||| || | |||||||| |||||||| ||| | |||| | |||||  ||||||||||| ||||||||    
T  29597473 atgacacgagttttttttaacttaacaaaggtcttgagttcaaattcagtcttgggcatgcaacaacgttaaaactcttagagagagttt 29597562  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 407
Target Start/End: Complemental strand, 50655250 - 50655201
Alignment:
Q  358 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttat 407  Q
    ||||| |||||||||||||||||||| |||| |||||| || ||||||||    
T  50655250 gtttggcatgctgttatttggaccatctggacgtcccgtaatgaccttat 50655201  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 342 - 415
Target Start/End: Original strand, 9644274 - 9644347
Alignment:
Q  342 attaggtcttctcttagtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 415  Q
    ||||||||| || ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| |||||||    
T  9644274 attaggtctccttttagtttgacatgttgttatttggaccatctggatgtcccggaacgaccttatcttctctg 9644347  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 21926538 - 21926595
Alignment:
Q  358 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 415  Q
    |||||||||||| ||||||||||||||||| ||||  | ||| |||||||||||||||    
T  21926538 gtttgacatgctattatttggaccatttgggtgtctaggaacaaccttattttctctg 21926595  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 36982405 - 36982457
Alignment:
Q  175 cttagacatgtagcaacgaaaaaactcttagtgagagtttgtcatccatttag 227  Q
    |||||||||| | |||||  ||||||||||| |||||||||||||||||||||    
T  36982405 cttagacatgcaacaacgttaaaactcttagggagagtttgtcatccatttag 36982457  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Original strand, 13297512 - 13297569
Alignment:
Q  358 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 415  Q
    ||||| |||||||||| |||||||||||||| ||||   || ||||||||||||||||    
T  13297512 gtttggcatgctgttaattggaccatttggacgtccttgaatgaccttattttctctg 13297569  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 51871122 - 51871171
Alignment:
Q  358 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttat 407  Q
    ||||| ||||||||||| ||||||||||||| | ||||||| ||||||||    
T  51871122 gtttggcatgctgttatctggaccatttggacgacccgaaatgaccttat 51871171  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 415
Target Start/End: Original strand, 34213065 - 34213124
Alignment:
Q  356 tagtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 415  Q
    ||||||| |||| |||||| ||||||||||||| ||||| ||||||||||||||||||||    
T  34213065 tagtttgccatgatgttatatggaccatttggacgtcccaaaacgaccttattttctctg 34213124  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 41640744 - 41640792
Alignment:
Q  359 tttgacatgctgttatttggaccatttggatgtcccgaaacgaccttat 407  Q
    |||| |||||||||||||| ||||||||| ||| ||| |||||||||||    
T  41640744 tttggcatgctgttatttgaaccatttgggtgttccggaacgaccttat 41640792  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 33743391 - 33743440
Alignment:
Q  358 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttat 407  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  33743391 gtttggcatgctgttatttggaccatttgggcgtcccgaaacgaccttat 33743440  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 414
Target Start/End: Complemental strand, 23177092 - 23177021
Alignment:
Q  342 attaggtcttctcttagtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctct 414  Q
    ||||||||||||  | |||||||||| ||||||||||||||| |||| ||| || |||| |||||||||||||    
T  23177092 attaggtcttcttctggtttgacatgttgttatttggaccatctggacgtctcggaacg-ccttattttctct 23177021  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 42241403 - 42241351
Alignment:
Q  358 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttatttt 410  Q
    |||||||||||||||||||| ||||| ||||  ||| ||||||||||||||||    
T  42241403 gtttgacatgctgttatttgaaccatctggacatccagaaacgaccttatttt 42241351  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 226
Target Start/End: Original strand, 25084034 - 25084135
Alignment:
Q  126 atgacacgagtcttttttaacttaaccaatgccttgagtttaaattcag-cttagacatgtagcaacgaaaaaactcttagtgagagtttgtcatccatt 224  Q
    ||||||| ||||| || || ||||| ||| | ||||||||  ||||||| ||| |||||| ||||| |  ||||||||||| ||||| ||||||||||||    
T  25084034 atgacacaagtctcttctagcttaatcaaagtcttgagttcgaattcagtcttggacatgcagcaatgttaaaactcttagggagagcttgtcatccatt 25084133  T
Q  225 ta 226  Q
    ||    
T  25084134 ta 25084135  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 410
Target Start/End: Complemental strand, 12834086 - 12834034
Alignment:
Q  358 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttatttt 410  Q
    ||||| |||||||||||||||||||| ||||||| ||| || || ||||||||    
T  12834086 gtttggcatgctgttatttggaccatctggatgttccggaatgatcttatttt 12834034  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 415
Target Start/End: Complemental strand, 3465478 - 3465421
Alignment:
Q  358 gtttgacatgctgttatttggaccatttggatgtcccgaaacgaccttattttctctg 415  Q
    |||||||||| ||||||||||||||| | ||  ||| |||||||||||||||| ||||    
T  3465478 gtttgacatgttgttatttggaccatctagacatccagaaacgaccttattttttctg 3465421  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 39401210 - 39401182
Alignment:
Q  126 atgacacgagtcttttttaacttaaccaa 154  Q
    |||||||||||||||||||||||||||||    
T  39401210 atgacacgagtcttttttaacttaaccaa 39401182  T

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