View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9005_low_85 (Length: 418)

Name: NF9005_low_85
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9005_low_85
NF9005_low_85
[»] chr7 (11 HSPs)
chr7 (61-401)||(18035876-18036212)
chr7 (64-105)||(17851434-17851475)
chr7 (64-107)||(2948684-2948727)
chr7 (64-107)||(5548677-5548720)
chr7 (64-107)||(29787384-29787427)
chr7 (61-107)||(23191897-23191943)
chr7 (64-98)||(24146826-24146860)
chr7 (65-107)||(32308121-32308163)
chr7 (57-94)||(39138458-39138495)
chr7 (62-98)||(7438716-7438752)
chr7 (64-121)||(9482917-9482978)
[»] chr1 (14 HSPs)
chr1 (64-121)||(6427333-6427394)
chr1 (64-107)||(25098570-25098613)
chr1 (64-107)||(19324563-19324606)
chr1 (64-107)||(25361887-25361930)
chr1 (64-107)||(36878462-36878505)
chr1 (64-98)||(2288182-2288216)
chr1 (53-107)||(21057784-21057838)
chr1 (65-107)||(39953162-39953204)
chr1 (56-105)||(27471573-27471622)
chr1 (62-107)||(31015044-31015089)
chr1 (62-107)||(38078674-38078719)
chr1 (64-121)||(398780-398841)
chr1 (68-121)||(2896140-2896197)
chr1 (64-104)||(44482234-44482274)
[»] chr6 (9 HSPs)
chr6 (64-107)||(30866159-30866202)
chr6 (64-131)||(9658852-9658923)
chr6 (56-107)||(5462687-5462738)
chr6 (64-107)||(7265608-7265651)
chr6 (64-107)||(7377980-7378023)
chr6 (64-107)||(9629384-9629427)
chr6 (64-107)||(19040353-19040396)
chr6 (64-107)||(32511681-32511724)
chr6 (64-98)||(9617444-9617478)
[»] chr4 (10 HSPs)
chr4 (64-106)||(2234252-2234294)
chr4 (64-132)||(903894-903966)
chr4 (64-107)||(8423733-8423776)
chr4 (61-98)||(14465087-14465124)
chr4 (61-98)||(44796974-44797011)
chr4 (64-112)||(3712524-3712572)
chr4 (62-98)||(24613714-24613750)
chr4 (64-100)||(26276024-26276060)
chr4 (56-108)||(30522922-30522974)
chr4 (64-107)||(35723399-35723443)
[»] scaffold0022 (1 HSPs)
scaffold0022 (64-107)||(99894-99937)
[»] chr8 (8 HSPs)
chr8 (64-107)||(31236592-31236635)
chr8 (64-107)||(34897086-34897129)
chr8 (64-94)||(18964191-18964221)
chr8 (57-107)||(22493495-22493545)
chr8 (57-98)||(12985402-12985443)
chr8 (57-98)||(14134709-14134750)
chr8 (62-98)||(29447123-29447159)
chr8 (62-98)||(40332201-40332237)
[»] chr3 (4 HSPs)
chr3 (64-107)||(9624642-9624685)
chr3 (64-94)||(35222952-35222982)
chr3 (65-97)||(12704056-12704088)
chr3 (62-98)||(14209123-14209159)
[»] chr2 (4 HSPs)
chr2 (64-107)||(21616763-21616806)
chr2 (61-98)||(44605151-44605188)
chr2 (64-121)||(23718009-23718070)
chr2 (64-121)||(24105681-24105742)
[»] chr5 (6 HSPs)
chr5 (65-103)||(19438348-19438386)
chr5 (64-98)||(30098336-30098370)
chr5 (57-98)||(22423820-22423861)
chr5 (62-107)||(31084324-31084369)
chr5 (64-93)||(42029767-42029796)
chr5 (66-98)||(17925189-17925221)


Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 61 - 401
Target Start/End: Original strand, 18035876 - 18036212
Alignment:
Q  61 atgtaattacattgaattatgtgattttctaaaattatcagcggtgt-----gtgtcagtgtccgtttagtgtctggg--cgtatcaagtnnnnnnngaa 153  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||     ||||| |||||||| ||||||||| |  ||||||||||       |||    
T  18035876 atgtaattacgctgaattatgtgatttcctaaaattatcagcggtgtcgggcgtgtcggtgtccgtgtagtgtctgtggccgtatcaagtaaaaaaagaa 18035975  T
Q  154 gagaaagggaaaagaaacctgttgtttaactccaagtggggatgctgtggtgtatgatacagaccagtcaaagtaaacaaaagggtcaccagaaaaagca 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18035976 gagaaagggaaaagaaacctgttgtttaactccaagtggggatgctgtggtgtatgatacagaccagtcaaagtaaacaaaagggtcaccagaaaaagca 18036075  T
Q  254 gtatctaagaagaagaaaaagaagcatagaagtgttgtgaagaaccaacaagacaatgatggcatcgtgtgttactattgaatctgtttttggtatctct 353  Q
    |||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  18036076 gtatctaagaagaag---aagaagcatagaagtgttgtgaagaaccaacaagacaatgatggcatcgtgtgttactattgaatctgtttttgg------- 18036165  T
Q  354 cttatcttcttaagttttgtgttgaggtgaaggaaataatttagaaag 401  Q
     |||||||||||||||||||||||||||||| ||||||||||||||||    
T  18036166 -ttatcttcttaagttttgtgttgaggtgaatgaaataatttagaaag 18036212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 105
Target Start/End: Complemental strand, 17851475 - 17851434
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggt 105  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  17851475 taattacactgaattatgtgattttctaaaattattagcggt 17851434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 2948727 - 2948684
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| | ||||| |||||||||||||||||||||||||||    
T  2948727 taattacactaaattacgtgattttctaaaattatcagcggtgt 2948684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 5548720 - 5548677
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||    
T  5548720 taattacactgaattatttgattttctcaaattatcagcggtgt 5548677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 29787384 - 29787427
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  29787384 taattacactgaattatgtgattttctcaaattattagcggtgt 29787427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 107
Target Start/End: Complemental strand, 23191943 - 23191897
Alignment:
Q  61 atgtaattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||| |||| ||||||||||||| ||||||| ||||||||    
T  23191943 atgtaattacactgaaatatgtgattttctcaaattattagcggtgt 23191897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 24146860 - 24146826
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattat 98  Q
    |||||| ||||||||||||||||||||||||||||    
T  24146860 taattatattgaattatgtgattttctaaaattat 24146826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 32308163 - 32308121
Alignment:
Q  65 aattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||    
T  32308163 aattacactgaattatgtgattttctcaaattattagcggtgt 32308121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 39138495 - 39138458
Alignment:
Q  57 acatatgtaattacattgaattatgtgattttctaaaa 94  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  39138495 acatatataattacactgaattatgtgattttctaaaa 39138458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 7438752 - 7438716
Alignment:
Q  62 tgtaattacattgaattatgtgattttctaaaattat 98  Q
    ||||||||||||||||||||||||||| | |||||||    
T  7438752 tgtaattacattgaattatgtgattttttcaaattat 7438716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 9482978 - 9482917
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggt----gtgtgtcagtgtccgt 121  Q
    |||||||| |||||| ||||||||||| |||||||||||| |    ||||||||||||||||    
T  9482978 taattacactgaattgtgtgattttctcaaattatcagcgatgtcggtgtgtcagtgtccgt 9482917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 6427394 - 6427333
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt----gtgtcagtgtccgt 121  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    ||||||||||||||    
T  6427394 taattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccgt 6427333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 25098570 - 25098613
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||||||||||||    
T  25098570 taattacactgaattatgtgattttctcaaattatcagcggtgt 25098613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 19324606 - 19324563
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||||||| ||||    
T  19324606 taattacactgaattatgtgattttctcaaattatcagcagtgt 19324563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 25361930 - 25361887
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| |||||||||| |||||    
T  25361930 taattacactgaattatgtgattttctcaaattatcagtggtgt 25361887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 36878505 - 36878462
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  36878505 taattacactgaattatgtgattttctcaaattattagcggtgt 36878462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 2288182 - 2288216
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattat 98  Q
    ||||||||||||||||||||||||||| |||||||    
T  2288182 taattacattgaattatgtgattttcttaaattat 2288216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 21057838 - 21057784
Alignment:
Q  53 actaacatatgtaattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||| |||  |||||||| |||||||| ||||||||||||||| ||||||||    
T  21057838 actaacacatgcgattacattcaattatgttattttctaaaattattagcggtgt 21057784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 107
Target Start/End: Original strand, 39953162 - 39953204
Alignment:
Q  65 aattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||| | |||||||||||||||||||||||| ||||||||    
T  39953162 aattacactaaattatgtgattttctaaaattattagcggtgt 39953204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 27471573 - 27471622
Alignment:
Q  56 aacatatgtaattacattgaattatgtgattttctaaaattatcagcggt 105  Q
    |||| ||||||||||| ||||||||||| |||||| ||||||| ||||||    
T  27471573 aacacatgtaattacactgaattatgtgcttttctcaaattattagcggt 27471622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 31015089 - 31015044
Alignment:
Q  62 tgtaattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||||| |||||||||||||||||| ||||||| ||| ||||    
T  31015089 tgtaattacactgaattatgtgattttctcaaattattagctgtgt 31015044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 38078674 - 38078719
Alignment:
Q  62 tgtaattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||||||||||||||||||| | ||||||| ||| ||||    
T  38078674 tgtaattacattgaattatgtgattttttcaaattattagctgtgt 38078719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 398780 - 398841
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt----gtgtcagtgtccgt 121  Q
    |||||||| |||||||||||||||| | ||||||| ||||||||    ||||||||||||||    
T  398780 taattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgt 398841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 2896140 - 2896197
Alignment:
Q  68 tacattgaattatgtgattttctaaaattatcagcggtgt----gtgtcagtgtccgt 121  Q
    |||| |||||||||||||||||| ||||||| ||||||||    ||||||||||||||    
T  2896140 tacactgaattatgtgattttctcaaattattagcggtgtcggcgtgtcagtgtccgt 2896197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 44482274 - 44482234
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcgg 104  Q
    |||||||| |||||||||||||||||| ||||||| |||||    
T  44482274 taattacactgaattatgtgattttctcaaattataagcgg 44482234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 30866159 - 30866202
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||    
T  30866159 taattacattgaattatgtgattttctcaaattattagcggtgt 30866202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 131
Target Start/End: Complemental strand, 9658923 - 9658852
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt----gtgtcagtgtccgtttagtgtctg 131  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    |||||||||||||| | |||||||    
T  9658923 taattacactgaattatgtgattttcttaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtctg 9658852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 5462738 - 5462687
Alignment:
Q  56 aacatatgtaattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||| |||||||| |||||||||||||||||| ||||||| | ||||||    
T  5462738 aacatatataattacaatgaattatgtgattttctcaaattattaacggtgt 5462687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 7265608 - 7265651
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  7265608 taattacactgaattatgtgattttctcaaattattagcggtgt 7265651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 7378023 - 7377980
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||    
T  7378023 taattacattgaattatgtgattttctcaaatttttagcggtgt 7377980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 9629427 - 9629384
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||||||||||||||||||| |||||||  |||||||    
T  9629427 taattacattgaattatgtgattttctcaaattattggcggtgt 9629384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 19040396 - 19040353
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  19040396 taattacactgaattatgtgattttctcaaattattagcggtgt 19040353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 32511681 - 32511724
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  32511681 taattacactgaattatgtgattttcttaaattattagcggtgt 32511724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 9617478 - 9617444
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattat 98  Q
    ||||||||||||||||||||||||||| |||||||    
T  9617478 taattacattgaattatgtgattttctcaaattat 9617444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 106
Target Start/End: Complemental strand, 2234294 - 2234252
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtg 106  Q
    ||||||||||||||||||||||||||| ||||||||| |||||    
T  2234294 taattacattgaattatgtgattttctcaaattatcaacggtg 2234252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 903966 - 903894
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggt----gtgtgtcagtgtccgtttagtgtctgg 132  Q
    |||||||| |||||||||||||||||| ||||||| | ||||    ||||||||||||||||||  |||||||    
T  903966 taattacactgaattatgtgattttctcaaattattaacggtgccggtgtgtcagtgtccgttttatgtctgg 903894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 8423733 - 8423776
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  8423733 taattacactgaattatgtgattttctcaaattattagcggtgt 8423776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 14465087 - 14465124
Alignment:
Q  61 atgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||||||||||||||||||||||||||| | |||||||    
T  14465087 atgtaattacattgaattatgtgattttttcaaattat 14465124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 44796974 - 44797011
Alignment:
Q  61 atgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  44796974 atgtaattacattgaattatgttattttctcaaattat 44797011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 3712524 - 3712572
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgtgtgtc 112  Q
    ||||||||||||||||  ||||||||| ||||||| |||||||| ||||    
T  3712524 taattacattgaattacatgattttctcaaattattagcggtgtctgtc 3712572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 24613714 - 24613750
Alignment:
Q  62 tgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||| |||||||||||||||||||||||| |||||||    
T  24613714 tgtacttacattgaattatgtgattttctcaaattat 24613750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 26276024 - 26276060
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatca 100  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  26276024 taattacattgaattatgtcattttctcaaattatca 26276060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 30522922 - 30522974
Alignment:
Q  56 aacatatgtaattacattgaattatgtgattttctaaaattatcagcggtgtg 108  Q
    ||||||| || ||||| |||||||||||||||||| |||| || |||||||||    
T  30522922 aacatatatagttacactgaattatgtgattttctcaaataattagcggtgtg 30522974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 35723399 - 35723443
Alignment:
Q  64 taattacattgaattatgtg-attttctaaaattatcagcggtgt 107  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||||    
T  35723399 taattacattgaattatgtgtattttctcaaattattagcggtgt 35723443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 99937 - 99894
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||    
T  99937 taattacattgaattatgttattttctaaaattattatcggtgt 99894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 31236592 - 31236635
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  31236592 taattacattgaattatgtgattttctcaaattattagcagtgt 31236635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 34897129 - 34897086
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  34897129 taattacactgaattatgtgattttctcaaattattagcggtgt 34897086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 18964221 - 18964191
Alignment:
Q  64 taattacattgaattatgtgattttctaaaa 94  Q
    |||||||||||||||||||||||||||||||    
T  18964221 taattacattgaattatgtgattttctaaaa 18964191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 22493545 - 22493495
Alignment:
Q  57 acatatgtaattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||| | |||||| |||||||||||||||| |||||||||||| |||||    
T  22493545 acatatatgattacactgaattatgtgattttttaaaattatcagtggtgt 22493495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 12985443 - 12985402
Alignment:
Q  57 acatatgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||||| | ||||||||||||||||||||||||| |||||||    
T  12985443 acatatatgattacattgaattatgtgattttctcaaattat 12985402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 14134750 - 14134709
Alignment:
Q  57 acatatgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||||| |||||||| |||||||||||||||||| |||||||    
T  14134750 acatatataattacactgaattatgtgattttctcaaattat 14134709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 29447123 - 29447159
Alignment:
Q  62 tgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||| |||||||||||||||||||||||| |||||||    
T  29447123 tgtagttacattgaattatgtgattttctcaaattat 29447159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 40332237 - 40332201
Alignment:
Q  62 tgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||||||||| |||||||||||||||||| |||||||    
T  40332237 tgtaattacactgaattatgtgattttctcaaattat 40332201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 9624685 - 9624642
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||    
T  9624685 taattacattgaattatgtgattttctcaaattattagcagtgt 9624642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 94
Target Start/End: Complemental strand, 35222982 - 35222952
Alignment:
Q  64 taattacattgaattatgtgattttctaaaa 94  Q
    |||||||||||||||||||||||||||||||    
T  35222982 taattacattgaattatgtgattttctaaaa 35222952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 97
Target Start/End: Complemental strand, 12704088 - 12704056
Alignment:
Q  65 aattacattgaattatgtgattttctaaaatta 97  Q
    |||||||||||||||||||||||||| ||||||    
T  12704088 aattacattgaattatgtgattttctcaaatta 12704056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 14209159 - 14209123
Alignment:
Q  62 tgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||||||||| |||||||||||||||| |||||||||    
T  14209159 tgtaattacactgaattatgtgattttttaaaattat 14209123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 21616806 - 21616763
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    |||||||| |||||||||||||||||| ||||||| ||||||||    
T  21616806 taattacactgaattatgtgattttctcaaattattagcggtgt 21616763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 44605151 - 44605188
Alignment:
Q  61 atgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  44605151 atgtaattacattgaattatgttattttctcaaattat 44605188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 23718070 - 23718009
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggt----gtgtgtcagtgtccgt 121  Q
    |||||||| |||||||||||| ||||| ||||||| ||||||    ||||||||||||||||    
T  23718070 taattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgt 23718009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 24105742 - 24105681
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattatcagcggt----gtgtgtcagtgtccgt 121  Q
    |||||||| |||||||||||| ||||| ||||||| ||||||    ||||||||||||||||    
T  24105742 taattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgt 24105681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 19438386 - 19438348
Alignment:
Q  65 aattacattgaattatgtgattttctaaaattatcagcg 103  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  19438386 aattacactgaattatgtgattttctcaaattatcagcg 19438348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 98
Target Start/End: Complemental strand, 30098370 - 30098336
Alignment:
Q  64 taattacattgaattatgtgattttctaaaattat 98  Q
    ||||||||||||||||||||||||||| |||||||    
T  30098370 taattacattgaattatgtgattttctcaaattat 30098336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 22423820 - 22423861
Alignment:
Q  57 acatatgtaattacattgaattatgtgattttctaaaattat 98  Q
    |||||| |||||| |||||||||||||||||||| |||||||    
T  22423820 acatatataattatattgaattatgtgattttctcaaattat 22423861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 31084369 - 31084324
Alignment:
Q  62 tgtaattacattgaattatgtgattttctaaaattatcagcggtgt 107  Q
    ||||||||||||||||||||||||||| | ||||||| ||| ||||    
T  31084369 tgtaattacattgaattatgtgattttttcaaattattagctgtgt 31084324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 42029796 - 42029767
Alignment:
Q  64 taattacattgaattatgtgattttctaaa 93  Q
    ||||||||||||||||||||||||||||||    
T  42029796 taattacattgaattatgtgattttctaaa 42029767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 98
Target Start/End: Original strand, 17925189 - 17925221
Alignment:
Q  66 attacattgaattatgtgattttctaaaattat 98  Q
    ||||||||||||||||||||||||| |||||||    
T  17925189 attacattgaattatgtgattttcttaaattat 17925221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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