View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_87 (Length: 411)
Name: NF9005_low_87
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 241 - 394
Target Start/End: Original strand, 45364498 - 45364651
Alignment:
| Q |
241 |
taccttttcaattatcagtcctttactggaagaagaccttccaaacttcgaaggtgaaggttcagagtatcgctccaccgttttcctttccctagttggc |
340 |
Q |
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| T |
45364498 |
taccttttcaattatcagtcctttactggaagaagaccttccaaacttcgaaggtgaaggttcagagtaccgctccaccgttttcctttccctagttggc |
45364597 |
T |
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| Q |
341 |
ctatcactcgtcggagtaaccggactcttcttctccgacgactctttcttcaca |
394 |
Q |
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| T |
45364598 |
ctatcactcgtcggagtaaccggactcttcttctccgacgactctttcttcaca |
45364651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 45364262 - 45364417
Alignment:
| Q |
19 |
gatcaactataattcaactccaatgaacaaacac------------atgatccctaaatttacacgatatcttcaacaaaatttactcaaaaggaactat |
106 |
Q |
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| T |
45364262 |
gatcaactataattcaactccaatgaacaaacacaatcagacacacatgatccctaaattcacacgatatcttcaacaaaatttactcaaaaggaactat |
45364361 |
T |
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| Q |
107 |
gtaaggcaattagacataccattaggaatatccttaagttgagtaccacgtccctg |
162 |
Q |
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| T |
45364362 |
gtaaggcaattagacataccattaggaatatccttaagctgagtaccacgtccctg |
45364417 |
T |
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