View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_93 (Length: 379)
Name: NF9005_low_93
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_93 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 16 - 307
Target Start/End: Original strand, 38289029 - 38289320
Alignment:
| Q |
16 |
agaggttgggagaacgttatttatgaaagtgattccaaagtcagtcgacgctattcatagttcagctagacttgcatcagaatttggttccattattttg |
115 |
Q |
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| T |
38289029 |
agaggttgggagaacgttatttatgaaagtgattccaaagtcagtcgacgctattcatagttcagctagacttgcatcagaatttggttccattattttg |
38289128 |
T |
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| Q |
116 |
taacactaaaacaaattgtctgttaattcaaagtttgtggtaaaatttattaggcgacaagcgaattcggttgcttgtattttagcaagggcggtcaatt |
215 |
Q |
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| T |
38289129 |
taacaataaaacaaattgtctgttaattcaaagtttgtggtaaaatttattaggcgacgagcgaattcggttgcttgtattttagcaagggcggtcaatt |
38289228 |
T |
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| Q |
216 |
cttgggatagtcaccagtgttttgattttgctcccacatgtaatgatactattcaattaataaaaggagttgagattgtttttgtcaaagtc |
307 |
Q |
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| T |
38289229 |
cttgggatagtcaccagtgttttgattttgctcccacttgtaatgatgctattcaattaataaaaggagttgagattgtttttgtcaaagtc |
38289320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 328 - 363
Target Start/End: Original strand, 38289339 - 38289374
Alignment:
| Q |
328 |
ctaatataaatatatttacctactcaactgcattct |
363 |
Q |
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| T |
38289339 |
ctaatataaatatatttacctactcaaatgcattct |
38289374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 112
Target Start/End: Original strand, 38302006 - 38302044
Alignment:
| Q |
74 |
agttcagctagacttgcatcagaatttggttccattatt |
112 |
Q |
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| T |
38302006 |
agttcagctagacttgcatcaaaatctggttccattatt |
38302044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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