View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_96 (Length: 361)
Name: NF9005_low_96
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_96 |
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Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 60 - 182
Target Start/End: Complemental strand, 41866083 - 41865961
Alignment:
| Q |
60 |
atttcattctttatttttcttcatattttataagccttactagccttatttgaactttgtggcaaatactcattgatttgaatacttcaacaattttttg |
159 |
Q |
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| T |
41866083 |
atttcattctttatttttcttcatattttattagccttattagccttatttgaactttgtggcaaatactcattgatttgaatacttcaacaattttttg |
41865984 |
T |
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| Q |
160 |
ttgactttacaacttcatatata |
182 |
Q |
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| T |
41865983 |
ttgactttacaacttcatatata |
41865961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 41866188 - 41866123
Alignment:
| Q |
1 |
tttgtgtatctttttatctctctattgctaccaccattttgcttctgttctaagccattatttcat |
66 |
Q |
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| T |
41866188 |
tttgtgtatctttttatctctctattgctaccaccattttgcttctgttctaagccattatttcat |
41866123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 41865106 - 41865041
Alignment:
| Q |
282 |
ttgagcagtattttgatagtcgagatttacattgacacttccatctttgcgccaactttcttctct |
347 |
Q |
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| T |
41865106 |
ttgagcagtgttttgatagtcgagatttacattgagacttccatctttgcgccaactttcttctct |
41865041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 41865282 - 41865199
Alignment:
| Q |
181 |
taatttatgcattggtaattttaattttagttaatttcaatctgaattgatgcattaaaaatatgtgtaatcaagccattatta |
264 |
Q |
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| T |
41865282 |
taatttatgcacttgtaattttaatttgagttaatttcaatctgagttaatgcattagaaatatgcgtaatcaagccattatta |
41865199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 160 - 264
Target Start/End: Original strand, 53005127 - 53005231
Alignment:
| Q |
160 |
ttgactttacaacttcatatataatttatgcattggtaattttaattttagttaatttcaatctgaattgatgcattaaaaatatgtgtaatcaagccat |
259 |
Q |
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||||||||| || |||||||| ||||| |||||||||||||||||||| |||||||||||||| || || |||||| || |||||||||||||||||| |
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| T |
53005127 |
ttgactttaaaatttcatatacaatttttgcattggtaattttaatttgagttaatttcaatcggagttattgcattggaattatgtgtaatcaagccat |
53005226 |
T |
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| Q |
260 |
tatta |
264 |
Q |
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||||| |
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| T |
53005227 |
tatta |
53005231 |
T |
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