View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9005_low_97 (Length: 356)
Name: NF9005_low_97
Description: NF9005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9005_low_97 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 29041978 - 29042301
Alignment:
| Q |
18 |
catgttgaatcaaagttttgacattcatcagcaagtcagggtaccctttaagattccaaatgggaccagttctaggactgtcgaatcgcttggtcgacca |
117 |
Q |
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| T |
29041978 |
catgttgaatcaaagttttgacattcatcggcaagtcagggtaccctttaagattccacatgggaccagtcctaggactgtcgaatggcttggtcgacca |
29042077 |
T |
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| Q |
118 |
tgtacaatggtgacatttccacactccttcagccataaaagtaatgacatatttaccaaaaatcagaaaagaaaaactaaccaagaaaatttgagtctaa |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29042078 |
tgtgcaatggtgacatttccacactccttcagccataaaagtgatgacatatttaccaaaaatcagaaaagaaaaactaaccaagaaaatttgagtctaa |
29042177 |
T |
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| Q |
218 |
ttgttatttatattggggttagttccaattaatttactaatcttacaaattatcttctttcattaagttagtaataatactcataagaaaagccaagcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29042178 |
ttgttatttatattggggttagttccaattaatttactaatcttacaaattatcttctttcattaagttagtaataatactcataagaaaagccaagcaa |
29042277 |
T |
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| Q |
318 |
gacaatttaaggtcaggaacacca |
341 |
Q |
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|||||||||||||||||||||||| |
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| T |
29042278 |
gacaatttaaggtcaggaacacca |
29042301 |
T |
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