View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9006_high_3 (Length: 467)
Name: NF9006_high_3
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9006_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 52 - 459
Target Start/End: Original strand, 15183758 - 15184162
Alignment:
| Q |
52 |
cttaattataagaaagaaaacaacacaaaa---gatgcaattcattttgaacttgaatgagaaatgagtcctggtacatatccataagctgaagaatatc |
148 |
Q |
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| T |
15183758 |
cttaattataagaaagaaaacaacacaaaattagatgcaattcaatttgaacttgaatgagaaatgagtcctggtacatatccataagctgaagaatatc |
15183857 |
T |
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| Q |
149 |
accaacatnnnnnnnggaaagagtgcaaagtagacaaaatacacgtgctttttacactcctttgaagtgcatagacaaagaaagtggaataccaagtaag |
248 |
Q |
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| T |
15183858 |
accaacataaaa---ggaaagagtgcaaagtagacaaaatacacgtgctttttacactcctttgaagtgcatagacaaagaaagtggaataccaagtaag |
15183954 |
T |
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| Q |
249 |
caataattaatatcccatgtccttgctccactaatttatgtatcctcctatgtctcatactctatcgaatataagcaaaaatatcttttactaatagata |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15183955 |
caataattaatatcccatgtccttgctccactaatttatgtatcctcctatgtctcatactctatcgaatataagcaaaaatatcttt---taatagata |
15184051 |
T |
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| Q |
349 |
atgttgagacnnnnnnnagaagctatttagttaaatggactaggttggaccacgaaaaagnnnnnnnaagcctatattgcatgccagtaaatatgaatga |
448 |
Q |
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| T |
15184052 |
atgttgagactttttttagaagctatttagttaaatggactaggttggaccacgaaaaagtttttttaagcctatcttgcatgccagtaaatatgaatga |
15184151 |
T |
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| Q |
449 |
tgtttcttatt |
459 |
Q |
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| T |
15184152 |
tgtttcttatt |
15184162 |
T |
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