View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9006_low_12 (Length: 462)
Name: NF9006_low_12
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9006_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 41239658 - 41239225
Alignment:
| Q |
11 |
gaacctgtgacctcaatggacgaaattcaaattccctcggagatagatgtaaaatggtaattaatgtcactttaatgaatgataaataaatattatattt |
110 |
Q |
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| T |
41239658 |
gaacctgtaacctcaatggacgaaattcaaattccctcgaagatagatgtaaaatggtaattaatgtcactttaatgaatgataaataaatattatattt |
41239559 |
T |
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| Q |
111 |
atgcagattatatagcacgaagaaaagatttcccatggaaacttcgtctcaatatagcatgtggaattgcaaggggtttggccttcatttacaagaagtt |
210 |
Q |
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| T |
41239558 |
atgcagattatatagcacgaagaaaagatttcccatggaaacttcgtctcaatatagcatgtggaattgcaaggggtttggccttcatttacaagaagtt |
41239459 |
T |
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| Q |
211 |
ggaagaaggggaggtcaatagtattcctcatggaaacctcaagctatcaaatatccttcttgatgacaaaaacgaagccctaataagtgaacatggttta |
310 |
Q |
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| T |
41239458 |
agaagaaggggaggtcaatagtattcctcatggaaacctcaagctatcaaatatccttcttgatgacaaaaacgaagccctaataagtgaacatggttta |
41239359 |
T |
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| Q |
311 |
tcaaaattctttgaaccagatagaggtaccttcttttcctctcatggatacacagctcctgaaaagagtttaacagaaaaaggcgatgtttatagcttcg |
410 |
Q |
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| T |
41239358 |
tcaaaattctttgaaccagatagaggtaccttcttttcctctcatggatacacagctcctgaaaagagtttaacagaaaaaggcgatgtttatagcttcg |
41239259 |
T |
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| Q |
411 |
gagtgattctgctagaactactaactggacaaag |
444 |
Q |
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| T |
41239258 |
gagtgattctactagaactactaacaggacaaag |
41239225 |
T |
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