View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9006_low_16 (Length: 436)
Name: NF9006_low_16
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9006_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 16 - 428
Target Start/End: Complemental strand, 33451460 - 33451052
Alignment:
| Q |
16 |
catgtaattcagcaattgtattcaaattttagcaataataatnnnnnnngacaaatacaacatgcaactttagataaccatggtccatcaatattacata |
115 |
Q |
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| T |
33451460 |
catgtaattcagcaattgtattcaaaatttagcaataataatcaaaaa-gacaaatacaacatgcaactttagataaccatggtccatccatattacaga |
33451362 |
T |
|
| Q |
116 |
taattttcgaatttccacaaccaaaaaagccatcaattaagatgatacataacattcatacatggctaaccacgtaagtaacgtacccaactccgaatta |
215 |
Q |
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| T |
33451361 |
taattttcgaatttccacaaccaaaaaagccatcaattaggatgatacataacattcatacatggctaaccacgtaagtaacgtacc-aactccaaacta |
33451263 |
T |
|
| Q |
216 |
accttttcaacatatagcataatacgcaaatacatgtccctcaagttcacgtcatgtattcagagttaagataactctggtcgttggatcaatttcaaac |
315 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
33451262 |
accttttcaacata--gcataatacgcaaatacatgtccctcaacttcacgtcatgcattcagaattaagataactctcgtcgttggatcaatttcaaac |
33451165 |
T |
|
| Q |
316 |
cgtttagatttaacacaaattcttattctttttaacataagaacttagaacttgaaatctaaacggtctgatatgaaccaacacacttatttgaatgcat |
415 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33451164 |
cgtttagatttaacacaaattcttattctttttaatataagaacttagaacttgagatctaaacggtctgatatgaaccaacgcacttatttgaatgcat |
33451065 |
T |
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| Q |
416 |
aaatttctctgct |
428 |
Q |
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|||||||| |||| |
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| T |
33451064 |
aaatttctgtgct |
33451052 |
T |
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