View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9006_low_18 (Length: 419)
Name: NF9006_low_18
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9006_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 48439175 - 48439563
Alignment:
| Q |
2 |
tcaccagggttcttggtaactggaagtgactcaccagtgagtgcagattggtcaatcttaagggcatctccttccaagaggcgagcatcagctgggacaa |
101 |
Q |
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| T |
48439175 |
tcaccagggttcttggtaactggaagtgactcaccagtgagtgcagattggtcaatcttaagggcatctccttccaagaggcgagcatcagctgggacaa |
48439274 |
T |
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| Q |
102 |
tatctcccagctttatgctcactaaatctcctggcaccaaaattgccgcctcttgttcagtccattttccatccctcaacacctacaagtttgttaatta |
201 |
Q |
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| T |
48439275 |
tgtctcccagctttatgctcactaaatctcctggcactaaaattgccgcctcttgttcagtccattttccatccctcaacacctacaagtttgttaatta |
48439374 |
T |
|
| Q |
202 |
attattccatgttagaacagcaagtatgattcaaaagaaaacatatatgaaaatgaaaacagaaaacacataatttgatcacgtagcttggccaaatatg |
301 |
Q |
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| T |
48439375 |
attattccatgttagaacagcaagtatgattcaaaagaaaacatatatgaaaatgaaaacagaaaacacataat-------------ttggccaaatatg |
48439461 |
T |
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| Q |
302 |
cctacatctccactatagagtgaataatgcatattgattaccttggttttgggtgcaaggccagccattaaagctgctgcagcattgcctgcattgtttt |
401 |
Q |
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| T |
48439462 |
cctacgtctccactatagagtgaataatgcatattgattaccttggttttgggtgcaaggccagccattaaagctgctgcggcattgcctgcattgtttt |
48439561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 21982710 - 21982895
Alignment:
| Q |
4 |
accagggttcttggtaactggaagtgactcaccagtgagtgcagattggtcaatcttaagggcatctccttccaagaggcgagcatcagctgggacaata |
103 |
Q |
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| T |
21982710 |
accagggttccttgttactggcaaggactcaccagtaagggcagactggtcaatctttaagggatctccttccaaaagacgggcatcagctgggacaatg |
21982809 |
T |
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| Q |
104 |
tctcccagctttatgctcactaaatctcctggcaccaaaattgccgcctcttgttcagtccattttccatccctcaacacctacaa |
189 |
Q |
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| T |
21982810 |
tctcccaacttgatactgatcacatctcccggcaccaaaatttctgcctcttgctcactccattttccatccctcaacacctacaa |
21982895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 45199615 - 45199792
Alignment:
| Q |
2 |
tcaccagggttcttggtaactggaagtgactcaccagtgagtgcagattggtcaatcttaagggcatctccttccaagaggcgagcatcagctgggacaa |
101 |
Q |
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| T |
45199615 |
tcaccagggttcttggttgttggcaaggactcaccagtgagtgcagattgatcaatcttaagaggatctccgtccaaaagacgagcgtcggctggaacga |
45199714 |
T |
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| Q |
102 |
tatctcccagctttatgctcactaaatctcctggcaccaaaattgccgcctcttgttcagtccattttccatccctca |
179 |
Q |
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| T |
45199715 |
tgtctcctaatttgatgctgattatatctcctggtaccaatatagcagcctcttgctcagtccaccttccatctctca |
45199792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 21982965 - 21983028
Alignment:
| Q |
339 |
ttaccttggttttgggtgcaaggccagccattaaagctgctgcagcattgcctgcattgttttc |
402 |
Q |
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| T |
21982965 |
ttaccttggtttttggggcaagaccggccatcaaagcagctgcagcatttccagcattgttttc |
21983028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 403
Target Start/End: Original strand, 45199923 - 45199986
Alignment:
| Q |
340 |
taccttggttttgggtgcaaggccagccattaaagctgctgcagcattgcctgcattgttttct |
403 |
Q |
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| T |
45199923 |
taccttggttttgggagcaagaccagccataagtgctgcagcagcatttccagcattgttttct |
45199986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 1498827 - 1498907
Alignment:
| Q |
86 |
gcatcagctgggacaatatctcccagctttatgctcactaaatctcctggcaccaaaattgccgcctcttgttcagtccat |
166 |
Q |
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| T |
1498827 |
gcatcagctggaacaatatctcctaacttgatgctgattatgtctcctggtactaaaattgcagcatcttgttcactccat |
1498907 |
T |
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