View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9006_low_2 (Length: 691)

Name: NF9006_low_2
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9006_low_2
NF9006_low_2
[»] chr6 (12 HSPs)
chr6 (15-157)||(24126625-24126766)
chr6 (108-157)||(24125972-24126021)
chr6 (104-159)||(7193336-7193391)
chr6 (104-157)||(3543058-3543111)
chr6 (43-96)||(4311122-4311175)
chr6 (104-157)||(33018167-33018220)
chr6 (104-157)||(33480623-33480676)
chr6 (104-152)||(3542819-3542867)
chr6 (104-152)||(22582474-22582522)
chr6 (104-152)||(22587305-22587353)
chr6 (110-158)||(29998176-29998224)
chr6 (104-152)||(33479701-33479749)
[»] chr4 (12 HSPs)
chr4 (15-157)||(47376852-47376993)
chr4 (104-157)||(38694702-38694755)
chr4 (104-159)||(9939366-9939421)
chr4 (108-158)||(47377597-47377647)
chr4 (104-159)||(26611278-26611333)
chr4 (104-158)||(11417686-11417740)
chr4 (104-158)||(21166370-21166424)
chr4 (104-158)||(29651327-29651381)
chr4 (104-157)||(11417932-11417985)
chr4 (104-157)||(36865712-36865765)
chr4 (108-157)||(45235959-45236008)
chr4 (108-157)||(45330565-45330614)
[»] chr5 (7 HSPs)
chr5 (548-676)||(8048356-8048484)
chr5 (339-491)||(8043594-8043749)
chr5 (104-152)||(33001937-33001985)
chr5 (43-127)||(33685775-33685859)
chr5 (104-158)||(8204119-8204173)
chr5 (104-158)||(33002811-33002865)
chr5 (104-157)||(15184012-15184065)
[»] chr2 (10 HSPs)
chr2 (15-139)||(4058923-4059046)
chr2 (104-158)||(37547997-37548051)
chr2 (105-151)||(44154978-44155024)
chr2 (77-158)||(21471016-21471097)
chr2 (108-161)||(30545434-30545487)
chr2 (108-157)||(37546563-37546612)
chr2 (110-158)||(41043329-41043377)
chr2 (104-157)||(14573261-14573314)
chr2 (104-157)||(21471949-21472002)
chr2 (105-157)||(30544727-30544779)
[»] chr1 (7 HSPs)
chr1 (20-135)||(41882190-41882305)
chr1 (10-143)||(41884131-41884263)
chr1 (77-158)||(51974436-51974517)
chr1 (104-159)||(43737973-43738028)
chr1 (104-158)||(48972440-48972494)
chr1 (104-157)||(16270207-16270260)
chr1 (104-157)||(23440860-23440913)
[»] chr8 (7 HSPs)
chr8 (15-128)||(42915717-42915829)
chr8 (77-159)||(41859308-41859390)
chr8 (110-157)||(43924490-43924537)
chr8 (104-162)||(5034893-5034951)
chr8 (111-157)||(12349967-12350013)
chr8 (104-158)||(34992259-34992313)
chr8 (104-157)||(38023624-38023677)
[»] chr7 (13 HSPs)
chr7 (15-143)||(26246285-26246412)
chr7 (77-157)||(668179-668259)
chr7 (104-159)||(37468908-37468963)
chr7 (104-158)||(38071897-38071951)
chr7 (104-158)||(38778853-38778907)
chr7 (99-157)||(46759252-46759310)
chr7 (104-157)||(17145622-17145675)
chr7 (108-157)||(27599211-27599260)
chr7 (108-157)||(27600094-27600143)
chr7 (104-157)||(37469000-37469053)
chr7 (104-157)||(38779558-38779611)
chr7 (104-152)||(7677804-7677852)
chr7 (109-157)||(46756270-46756318)
[»] scaffold0041 (2 HSPs)
scaffold0041 (104-157)||(27221-27274)
scaffold0041 (104-157)||(27570-27623)
[»] chr3 (5 HSPs)
chr3 (104-152)||(32490190-32490238)
chr3 (104-158)||(36750432-36750486)
chr3 (110-160)||(38337478-38337528)
chr3 (104-152)||(36750050-36750098)
chr3 (105-157)||(38923661-38923713)
[»] scaffold0129 (1 HSPs)
scaffold0129 (109-143)||(43218-43252)
[»] scaffold0311 (1 HSPs)
scaffold0311 (105-158)||(156-209)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 2e-60; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 24126625 - 24126766
Alignment:
Q  15 agagaagagtggtaggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaactttt 114  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||     
T  24126625 agagaagagtggtaggagagagtctgaaaa-atatctagtgttaagagtccataataataccatgttcttcatttaatccaaaagttaagatcaactttc 24126723  T
Q  115 ccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  24126724 ccatgatgggaaacaactcccctttcccaaattaaatgccacc 24126766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 24126021 - 24125972
Alignment:
Q  108 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  24126021 aactttcccatggtgggaaacaactcccctttcccaaattaaatgccacc 24125972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 7193391 - 7193336
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 159  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  7193391 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 7193336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 3543058 - 3543111
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  3543058 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 3543111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 4311122 - 4311175
Alignment:
Q  43 aaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaa 96  Q
    |||||||||| |||||||||||||| ||| |||| ||||||||| || ||||||    
T  4311122 aaaatatctaatgttaagagtccatgatagtaccgtgttcttcatttgatccaa 4311175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 33018220 - 33018167
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| | ||||||||||| ||||| ||||| |||||||||||| ||||    
T  33018220 gatcaactttccaatgatgggaaagaactctcctttcccaaattaaatggcacc 33018167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 33480623 - 33480676
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  33480623 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 33480676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 3542867 - 3542819
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 152  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  3542867 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatg 3542819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 22582474 - 22582522
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 152  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  22582474 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 22582522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 22587305 - 22587353
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 152  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  22587305 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 22587353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 29998176 - 29998224
Alignment:
Q  110 cttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||| ||||||||| ||| ||||  ||||||||||||||||||||||||    
T  29998176 ctttcccatgatggaaaaaaactaaccttttccaaattaaatgccacct 29998224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 33479749 - 33479701
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 152  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  33479749 gatcaactttcccatggtgggaaataactctcctttcccaaattaaatg 33479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 47376993 - 47376852
Alignment:
Q  15 agagaagagtggtaggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaactttt 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||     
T  47376993 agagaagagtggtaggagagagtctgaaaaa-tatctagtgttaagagtccataataataccatgttcttcatttaatccaaaagttaagatcaactttc 47376895  T
Q  115 ccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  47376894 ccatgatgggaaacaactcccctttcccaaattaaatgccacc 47376852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 38694755 - 38694702
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||    
T  38694755 gatcaacttttccatgctgggaaagaactctccttttccaaattaaatggcacc 38694702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 9939366 - 9939421
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 159  Q
    |||||||||||||||| ||||||| |||||||||||  ||||||||||| ||||||    
T  9939366 gatcaacttttccatggtgggaaagaactcccctttctcaaattaaatggcacctg 9939421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 158
Target Start/End: Original strand, 47377597 - 47377647
Alignment:
Q  108 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||| ||||| ||||||||||||||||||| |||||||||||| |||||    
T  47377597 aactttcccatggtgggaaacaactcccctttcccaaattaaatggcacct 47377647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 26611278 - 26611333
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 159  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  26611278 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatgacacctg 26611333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 11417740 - 11417686
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  11417740 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 11417686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 21166370 - 21166424
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||||||||||| ||||| |||||  ||||||||||| |||||    
T  21166370 gatcaactttcccatgatgggaaagaactctcctttctcaaattaaatggcacct 21166424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 29651327 - 29651381
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  29651327 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 29651381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 11417932 - 11417985
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  11417932 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacc 11417985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 36865712 - 36865765
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  36865712 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgtcacc 36865765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 45235959 - 45236008
Alignment:
Q  108 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||| ||||| ||||||| ||||| |||||||||||||||||| ||||    
T  45235959 aactttcccatggtgggaaagaactctccttttccaaattaaatggcacc 45236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 45330614 - 45330565
Alignment:
Q  108 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||||| ||||||||||||||||||| |||  |||||| |||||    
T  45330614 aacttttccatggtgggaaacaactcccctttcccattttaaattccacc 45330565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 548 - 676
Target Start/End: Original strand, 8048356 - 8048484
Alignment:
Q  548 tagaaaatgtagcaaaggaactagtagttgcaaattaggtccagcctgtcggtccgtttaacctgctattttaggcaggttgggttgaggttttgtacaa 647  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8048356 tagaaaatgcagcaaacgaactagtagttgcaaattaggtccagcctgtcggtccgtttaacctgctattttaggcaggctgggttgaggttttgtacaa 8048455  T
Q  648 caataatactgcaaaaatatgcataaatt 676  Q
    |||||||||||||||||||||||||||||    
T  8048456 caataatactgcaaaaatatgcataaatt 8048484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 339 - 491
Target Start/End: Original strand, 8043594 - 8043749
Alignment:
Q  339 ttatctttctttcattcttgataaagctaatgaaattaaagatgaagaaagagtgtcaaaaatgcatactttagaaactctttatcacgata---gtgtg 435  Q
    ||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||| ||| | |||  ||||    |||   |||||    
T  8043594 ttatcttcctttcattcttgataaagctaaagaaatgaaagatgaagaaagagtgttgaaaatgcatacattaaacactgcttattgttatagcggtgtg 8043693  T
Q  436 agatgggactctagaaatcttgaacaccctacaacatttgaaacacttgctttgga 491  Q
    | |||||| || | |||||||||||| ||| |||||||||||||||||||| ||||    
T  8043694 aaatgggattcaataaatcttgaacatccttcaacatttgaaacacttgctatgga 8043749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 33001985 - 33001937
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 152  Q
    |||||||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  33001985 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatg 33001937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 33685859 - 33685775
Alignment:
Q  43 aaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaa 127  Q
    ||||||||| ||||||||||||||| ||||||| || ||||||| |||||| ||  | ||  |||||||||| |||| |||||||    
T  33685859 aaaatatcttgtgttaagagtccatgataatactatattcttcatttaatctaatggacataatcaacttttacatggtgggaaa 33685775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 8204173 - 8204119
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  8204173 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 8204119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 33002811 - 33002865
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  33002811 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatgacacct 33002865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 15184012 - 15184065
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  15184012 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 15184065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 4058923 - 4059046
Alignment:
Q  15 agagaagagtggtaggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaactttt 114  Q
    |||||||||||||||||||| || |||||| |||||||||||||| |||| || ||||||||||||||| || || ||| || |||||| |||||||||     
T  4058923 agagaagagtggtaggagagtgtgtgaaaa-atatctagtgttaacagtctatgataataccatgttctccatttgatctaatagtcaaaatcaactttc 4059021  T
Q  115 ccatgatgggaaacaactccccttt 139  Q
    | ||| |||||||| | ||||||||    
T  4059022 ctatggtgggaaactagtccccttt 4059046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 37548051 - 37547997
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||||    
T  37548051 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacct 37547997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 44154978 - 44155024
Alignment:
Q  105 atcaacttttccatgatgggaaacaactccccttttccaaattaaat 151  Q
    |||||||||||||| ||||||||||||| |||||| |||||||||||    
T  44154978 atcaacttttccatcatgggaaacaacttccctttcccaaattaaat 44155024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 21471097 - 21471016
Alignment:
Q  77 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  21471097 atgttcttcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 21471016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 30545434 - 30545487
Alignment:
Q  108 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacctgtc 161  Q
    |||||| |||| ||||||||||||| |||||| |||||||||||| ||||||||    
T  30545434 aactttcccatcatgggaaacaacttccctttcccaaattaaatggcacctgtc 30545487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 37546563 - 37546612
Alignment:
Q  108 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||| ||||||||||||||||||||||||| |||  ||||||||||||    
T  37546563 aactttcccatgatgggaaacaactcccctttcccattttaaatgccacc 37546612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 41043329 - 41043377
Alignment:
Q  110 cttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||||||||||| ||||  ||||| ||||||||||||||||||    
T  41043329 cttttccatgatgggaaaaaactagcctttcccaaattaaatgccacct 41043377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 14573314 - 14573261
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  14573314 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacc 14573261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 21471949 - 21472002
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  21471949 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 21472002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 30544779 - 30544727
Alignment:
Q  105 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    ||||||||| |||| ||||||||||||| || ||| |||||||||||| ||||    
T  30544779 atcaactttcccatcatgggaaacaacttccatttcccaaattaaatggcacc 30544727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 20 - 135
Target Start/End: Complemental strand, 41882305 - 41882190
Alignment:
Q  20 agagtggtaggagagagtctgaaaaaatatctagtgtt-aagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaacttttccat 118  Q
    ||||||| |||||||||| ||||||| ||||||||||| |||||||||| |||||||||||||||||| || |||||| |||||  ||||||||| | ||    
T  41882305 agagtggcaggagagagtgtgaaaaa-tatctagtgtttaagagtccatgataataccatgttcttcatttgatccaatagtcagaatcaactttcctat 41882207  T
Q  119 gatgggaaacaactccc 135  Q
    | |||||||| ||||||    
T  41882206 ggtgggaaactactccc 41882190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 41884131 - 41884263
Alignment:
Q  10 ggagcagagaagagtggtaggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaa 109  Q
    |||| ||||||||||  ||||||||| | ||||||| | ||||||||||||||||||| |||||| ||||||||||| || ||| || ||| |  |||||    
T  41884131 ggaggagagaagagtaataggagagattgtgaaaaatt-tctagtgttaagagtccatgataatatcatgttcttcatttgatctaatagttagaatcaa 41884229  T
Q  110 cttttccatgatgggaaacaactccccttttcca 143  Q
    |||| | ||| |||||||||| | ||||||||||    
T  41884230 ctttcctatggtgggaaacaatttcccttttcca 41884263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 51974517 - 51974436
Alignment:
Q  77 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| |||||| || || || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  51974517 atgttcttcatttaatctaatagacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 51974436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 43737973 - 43738028
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 159  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  43737973 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacctg 43738028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 48972440 - 48972494
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||||||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  48972440 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatggcacct 48972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 16270260 - 16270207
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  16270260 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 16270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 23440860 - 23440913
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  23440860 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 23440913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 3e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 42915717 - 42915829
Alignment:
Q  15 agagaagagtggtaggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaactttt 114  Q
    ||||||||||| | ||||||||| |||||| ||||||||||||||||||| || |||||||||||||||| | |||||  || |||||| |||||||||     
T  42915717 agagaagagtgatgggagagagtgtgaaaa-atatctagtgttaagagtctatgataataccatgttctttatttaatttaatagtcaaaatcaactttc 42915815  T
Q  115 ccatgatgggaaac 128  Q
    | ||| ||||||||    
T  42915816 ctatggtgggaaac 42915829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 159
Target Start/End: Complemental strand, 41859390 - 41859308
Alignment:
Q  77 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 159  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  41859390 atgttcttcatttaatctaacggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 41859308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 157
Target Start/End: Complemental strand, 43924537 - 43924490
Alignment:
Q  110 cttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||| ||||| |||||||||||| |||||| |||||||||||||||||    
T  43924537 ctttcccatggtgggaaacaacttccctttcccaaattaaatgccacc 43924490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 162
Target Start/End: Complemental strand, 5034951 - 5034893
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctgtca 162  Q
    |||||||||| ||||| ||| ||| ||||| ||||| |||||||||||| |||||||||    
T  5034951 gatcaactttcccatggtggaaaagaactctcctttcccaaattaaatggcacctgtca 5034893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 12350013 - 12349967
Alignment:
Q  111 ttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    ||||||||| |||||||||||| |||||| |||||||||| ||||||    
T  12350013 ttttccatggtgggaaacaacttccctttcccaaattaaacgccacc 12349967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 34992259 - 34992313
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  34992259 gatcaactttcccatggtgggaaaaaactctcctttcccaaattaaatggcacct 34992313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 38023677 - 38023624
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||||||||||||| ||| || || ||||| |||||||||||| ||||    
T  38023677 gatcaacttttccatgatggaaaagaattctcctttcccaaattaaatgacacc 38023624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 143
Target Start/End: Original strand, 26246285 - 26246412
Alignment:
Q  15 agagaagagtggtaggagagagtctgaaaaaatatctagtgttaagagtccataataataccatgttcttcaattaatccaaaagtcaagatcaactttt 114  Q
    |||||||| ||||||||||| || | |||||||||||| |||||| |||| || ||||||||||||||| || || ||  || || ||| |||||||||     
T  26246285 agagaagactggtaggagagtgtgt-aaaaaatatctattgttaacagtctatgataataccatgttctccatttgatataatagccaaaatcaactttc 26246383  T
Q  115 ccatgatgggaaacaactccccttttcca 143  Q
    | ||| |||||||| | ||||||||||||    
T  26246384 ctatggtgggaaactagtccccttttcca 26246412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 668259 - 668179
Alignment:
Q  77 atgttcttcaattaatccaaaagtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| |||||| ||  | || |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  668259 atgttcttcatttaatctaatggacatgatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 668179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 37468963 - 37468908
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacctg 159  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||||    
T  37468963 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacctg 37468908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 38071951 - 38071897
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||||||||||| ||||| ||||| | |||||||||| |||||    
T  38071951 gatcaactttcccatgatgggaaagaactctcctttcctaaattaaatggcacct 38071897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 38778907 - 38778853
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  38778907 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 38778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 46759252 - 46759310
Alignment:
Q  99 gtcaagatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||| | |||| | ||||||||||||||||||||||| ||| | |||||||||||    
T  46759252 gtcaagattagctttgctatgatgggaaacaactcccctttcccatactaaatgccacc 46759310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 17145675 - 17145622
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  17145675 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 17145622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Complemental strand, 27599260 - 27599211
Alignment:
Q  108 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||| ||||| ||||||||||||||||||| |||  ||||||||||||    
T  27599260 aactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 27600094 - 27600143
Alignment:
Q  108 aacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||| ||||| ||||||||||||||||||| |||  ||||||||||||    
T  27600094 aactttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 37469000 - 37469053
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  37469000 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 37469053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 38779558 - 38779611
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| ||||    
T  38779558 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacc 38779611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 7677804 - 7677852
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 152  Q
    |||||||||| ||||| ||||||| ||||| ||||| ||||||||||||    
T  7677804 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatg 7677852  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Complemental strand, 46756318 - 46756270
Alignment:
Q  109 acttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    ||||||||||| ||| |||||||| |||||| |||||||||| ||||||    
T  46756318 acttttccatggtggaaaacaacttccctttcccaaattaaacgccacc 46756270  T

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Target: scaffold0041 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 27274 - 27221
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||||||||||| ||||| ||||| |||||||||||| ||||    
T  27274 gatcaactttcccatgatgggaaagaactctcctttcccaaattaaatggcacc 27221  T

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Target: scaffold0041; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 27570 - 27623
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    |||||||||| ||||| ||||||| ||||| |||||||||||||||||| ||||    
T  27570 gatcaactttcccatggtgggaaaaaactctccttttccaaattaaatggcacc 27623  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 32490190 - 32490238
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 152  Q
    |||||||||||||||| ||||||| ||||| ||||| ||||||||||||    
T  32490190 gatcaacttttccatggtgggaaagaactctcctttcccaaattaaatg 32490238  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 104 - 158
Target Start/End: Original strand, 36750432 - 36750486
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    |||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  36750432 gatcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 36750486  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 38337478 - 38337528
Alignment:
Q  110 cttttccatgatgggaaacaactccccttttccaaattaaatgccacctgt 160  Q
    |||| ||||| |||||||||||| |||||| |||||||||| |||||||||    
T  38337478 ctttcccatggtgggaaacaacttccctttcccaaattaaacgccacctgt 38337528  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 36750098 - 36750050
Alignment:
Q  104 gatcaacttttccatgatgggaaacaactccccttttccaaattaaatg 152  Q
    |||||||||||||||| ||| ||| ||||| ||||| ||||||||||||    
T  36750098 gatcaacttttccatggtggaaaagaactctcctttcccaaattaaatg 36750050  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 38923661 - 38923713
Alignment:
Q  105 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacc 157  Q
    ||||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||    
T  38923661 atcaacttttccatggtgggaaagaactctcatttcccaaattaaatggcacc 38923713  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 43218 - 43252
Alignment:
Q  109 acttttccatgatgggaaacaactccccttttcca 143  Q
    ||||| |||||||||||||||||||||||||||||    
T  43218 actttcccatgatgggaaacaactccccttttcca 43252  T

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Target: scaffold0311 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 156 - 209
Alignment:
Q  105 atcaacttttccatgatgggaaacaactccccttttccaaattaaatgccacct 158  Q
    ||||||||| ||||| ||||||| ||||| ||||| |||||||||||| |||||    
T  156 atcaactttcccatggtgggaaagaactctcctttcccaaattaaatggcacct 209  T

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