View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9006_low_21 (Length: 364)
Name: NF9006_low_21
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9006_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 43564899 - 43565137
Alignment:
| Q |
1 |
gtttcattggagaatccaaagaaaccacctttttgagaaaaagcaataactttttgaaggagtgaaggtggggcatttgaatcagagggtttgcaaatag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||| ||||||||| |||||||| |||||||||||||| || |
|
|
| T |
43564899 |
gtttcatgagagaatccaaagaaaccacctttgtgagaaaaatcaagaactttttgaaggattgaaggtggagcatttgattcagagggtttgcatattt |
43564998 |
T |
|
| Q |
101 |
aagagaatgaactgaaagaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatcaaataatgactcggt |
200 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||| ||||| || |
|
|
| T |
43564999 |
cagagaaagaaccgaaagaaacattctcaggaacatcatggaacaaagaaacatctctaaccttaaactttccctcagataaatcaaataaagactcagt |
43565098 |
T |
|
| Q |
201 |
tttgatgagatcaagggttgtggaatttggtggagccat |
239 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
43565099 |
tttgatgagatcaaggtttgtggaattcggtggagccat |
43565137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 44954872 - 44954827
Alignment:
| Q |
307 |
tgaagggaagtgaaaaaccttactctatgatgggg-atatatagta |
351 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
44954872 |
tgaagggaagtgaaaatccttactctatgatggggtatatatagta |
44954827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36432854 - 36433075
Alignment:
| Q |
1 |
gtttcattggagaatccaaagaaaccacctttttgagaaaaagcaataactttttgaaggagtgaaggtggggcatttgaatcagagggtttgcaaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| || ||| | || |||||||||||| |||||||| ||||||||||| || |||| |
|
|
| T |
36432854 |
gtttcattggagaatccaaagaaaccacctttgtgagaaaaagaaagaacacggtcaacgagtgaaggtggtgcatttgactcagagggtttacatatag |
36432953 |
T |
|
| Q |
101 |
aagagaatgaactgaaagaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatcaaataatgactcggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || || | || |||||||| |||||||||| |||||||| || |
|
|
| T |
36432954 |
aagagaatgaactgaaagaaacattctcaggaacatcatgaaacaaaggaacacccctaacagtgaattttccctcggataaatcaagcaatgactcagt |
36433053 |
T |
|
| Q |
201 |
tttgatgagatcaagggttgtg |
222 |
Q |
| |
|
||||| | ||||||||||||| |
|
|
| T |
36433054 |
tttgacaatatcaagggttgtg |
36433075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43973703 - 43973477
Alignment:
| Q |
1 |
gtttcattggagaatccaaagaaaccacctttttgagaaaaagcaataactttttgaaggagtgaaggtggggcatttgaatcagagggtttgcaaatag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||| ||| ||||| ||||||||||| |||||||| ||||||| |||||| |||| |
|
|
| T |
43973703 |
gtttcatgggagaatccaaagaaaccacctttgtgagaaaaagcatgaacacgttgaacaagtgaaggtggtgcatttgattcagaggttttgcatatag |
43973604 |
T |
|
| Q |
101 |
aagagaatgaactgaaagaaacattctcaggaacatcatggaacaaaggaacacctctcaccttaaactttccctcagataaatcaaataatgactcggt |
200 |
Q |
| |
|
|||||| ||||| ||||||||||| | |||||||||||||||||||||||| ||| |||| |||| ||||||| |||||||||||||| ||||| || |
|
|
| T |
43973603 |
cagagaaagaactaaaagaaacattgttaggaacatcatggaacaaaggaacgcctttcacagtaaatgttccctcggataaatcaaataaagactcagt |
43973504 |
T |
|
| Q |
201 |
tttgatgagatcaagggttgtggaatt |
227 |
Q |
| |
|
||||| |||||||||| ||||||||| |
|
|
| T |
43973503 |
tttgacaagatcaagggctgtggaatt |
43973477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 8952262 - 8952102
Alignment:
| Q |
1 |
gtttcattggagaatccaaagaaaccacctttttgagaaaaagcaataactttttgaaggagtgaaggtggggcatttgaatcagagggtttgcaaatag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||| ||| | ||||| ||||||||||| |||||||| ||||||| |||||| |||| |
|
|
| T |
8952262 |
gtttcatgggagaatccaaagaaaccacctttgcgagaaaaagcatgaacatgttgaacaagtgaaggtggtgcatttgattcagaggttttgcatatag |
8952163 |
T |
|
| Q |
101 |
aagagaatgaactgaaagaaacattctcaggaacatcatggaacaaaggaacacctctcac |
161 |
Q |
| |
|
||||| ||||| |||| |||| | | |||||||||||||||||||||||||||| |||| |
|
|
| T |
8952162 |
cagagacagaactaaaaggaacactgttaggaacatcatggaacaaaggaacacctttcac |
8952102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University