View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9006_low_28 (Length: 261)
Name: NF9006_low_28
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9006_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 38387603 - 38387373
Alignment:
| Q |
19 |
ctatcatatataatccacaggtatcccaaatgccgactcaagaatattgatgcttta-cagtaattgcttactgtctaattgcagtatggacagcttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
38387603 |
ctatcatatataatccacaggtatcccaaatgccaactcaagaatattgatgctttaactgtaattgcttactgtctaattgcagtatggacagcttctt |
38387504 |
T |
|
| Q |
118 |
ggtcatcctagctaggcaagctttatacatgccgagttaccaacctgtaagaacttccatgttttactcataattttatttcttaaaaatggtcgttaga |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38387503 |
ggtcatcctag----gcaagctttatacatgccgagttaccaacctgtaagaacttccatgttttactcataattttatttcttaaaaatggtcgttaga |
38387408 |
T |
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| Q |
218 |
taaacatttcttatattttattttagcagtattat |
252 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
38387407 |
taaacatttcttatattttattttagcagtattat |
38387373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 70 - 247
Target Start/End: Original strand, 42649117 - 42649290
Alignment:
| Q |
70 |
gctttacagtaattgcttactgtctaattgcagtatggacagcttcttggtcatcctagctaggcaagctttatacatgccgagttaccaacctgtaaga |
169 |
Q |
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||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42649117 |
gctttacggtaattgcttactatctaattgcagtacggacagcttcttggtcatcctac----gcaagctttatacatgccgagttaccaacctgtaaga |
42649212 |
T |
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| Q |
170 |
acttccatgttttactcataattttatttcttaaaaatggtcgttagataaacatttcttatattttattttagcagt |
247 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42649213 |
acttccatgttttactcataatttaatttcttaaaaatggtcgttagataagcatttcttatattttattttagcagt |
42649290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 42648990 - 42649031
Alignment:
| Q |
19 |
ctatcatatataatccacaggtatcccaaatgccgactcaag |
60 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42648990 |
ctatcatatataatccacaggtatcccaaatgccaactcaag |
42649031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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