View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9006_low_35 (Length: 211)

Name: NF9006_low_35
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9006_low_35
NF9006_low_35
[»] chr5 (13 HSPs)
chr5 (37-196)||(7472912-7473071)
chr5 (37-196)||(9044337-9044496)
chr5 (37-196)||(30441973-30442132)
chr5 (70-152)||(40163917-40163996)
chr5 (10-41)||(29875203-29875234)
chr5 (10-41)||(42793567-42793598)
chr5 (10-40)||(23090547-23090577)
chr5 (10-43)||(23090293-23090326)
chr5 (10-39)||(41610372-41610401)
chr5 (10-38)||(12398946-12398974)
chr5 (10-38)||(12399195-12399223)
chr5 (10-38)||(34208538-34208566)
chr5 (10-38)||(42757805-42757833)
[»] chr2 (9 HSPs)
chr2 (37-196)||(12742223-12742382)
chr2 (37-186)||(23348417-23348566)
chr2 (37-196)||(18354734-18354893)
chr2 (37-186)||(10328462-10328611)
chr2 (10-41)||(10112336-10112367)
chr2 (10-41)||(43041098-43041129)
chr2 (10-38)||(15234004-15234032)
chr2 (10-38)||(43040849-43040877)
chr2 (10-38)||(44104546-44104574)
[»] chr7 (15 HSPs)
chr7 (37-196)||(43070809-43070968)
chr7 (10-40)||(46467333-46467363)
chr7 (10-39)||(4405358-4405387)
chr7 (10-39)||(29427413-29427442)
chr7 (10-39)||(29890825-29890854)
chr7 (10-39)||(43701550-43701579)
chr7 (10-38)||(6387941-6387969)
chr7 (10-38)||(17904163-17904191)
chr7 (10-38)||(17904412-17904440)
chr7 (10-38)||(26770179-26770207)
chr7 (10-38)||(29723386-29723414)
chr7 (10-38)||(29891075-29891103)
chr7 (10-38)||(37179331-37179359)
chr7 (10-38)||(37179580-37179608)
chr7 (10-38)||(46467584-46467612)
[»] chr3 (20 HSPs)
chr3 (37-192)||(19881542-19881697)
chr3 (37-186)||(37982943-37983092)
chr3 (37-186)||(53972723-53972872)
chr3 (10-41)||(41349368-41349399)
chr3 (10-40)||(29371787-29371817)
chr3 (10-40)||(39518656-39518686)
chr3 (10-39)||(1352245-1352274)
chr3 (10-39)||(29014689-29014718)
chr3 (10-39)||(36737833-36737862)
chr3 (10-39)||(38855566-38855595)
chr3 (10-38)||(1351996-1352024)
chr3 (10-38)||(18996967-18996995)
chr3 (10-38)||(18997216-18997244)
chr3 (10-38)||(18999506-18999534)
chr3 (10-38)||(18999755-18999783)
chr3 (10-38)||(32677726-32677754)
chr3 (10-38)||(39528749-39528777)
chr3 (10-38)||(39528998-39529026)
chr3 (10-38)||(41349620-41349648)
chr3 (10-38)||(46878984-46879012)
[»] scaffold0596 (1 HSPs)
scaffold0596 (37-186)||(1189-1338)
[»] chr8 (11 HSPs)
chr8 (10-41)||(27027660-27027691)
chr8 (10-39)||(9739984-9740013)
chr8 (10-39)||(27024432-27024461)
chr8 (10-39)||(33837978-33838007)
chr8 (10-38)||(2509045-2509073)
chr8 (10-38)||(9740235-9740263)
chr8 (10-38)||(25106460-25106488)
chr8 (10-38)||(28379196-28379224)
chr8 (10-38)||(33837729-33837757)
chr8 (10-38)||(45334276-45334304)
chr8 (10-38)||(45334525-45334553)
[»] chr1 (10 HSPs)
chr1 (10-40)||(4817267-4817297)
chr1 (10-39)||(4055483-4055512)
chr1 (10-39)||(10737700-10737729)
chr1 (10-39)||(46220508-46220537)
chr1 (10-39)||(47669118-47669147)
chr1 (10-39)||(48565066-48565095)
chr1 (10-38)||(9831503-9831531)
chr1 (10-38)||(18126851-18126879)
chr1 (10-38)||(33020206-33020234)
chr1 (10-38)||(47669368-47669396)
[»] chr6 (5 HSPs)
chr6 (10-39)||(27312113-27312142)
chr6 (10-39)||(27312365-27312394)
chr6 (10-39)||(32274433-32274462)
chr6 (10-38)||(8504733-8504761)
chr6 (10-38)||(29302520-29302548)
[»] chr4 (3 HSPs)
chr4 (10-39)||(19256185-19256214)
chr4 (10-39)||(36016278-36016307)
chr4 (10-38)||(19257109-19257137)


Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 7473071 - 7472912
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7473071 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 7472972  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcatatgtttattt 196  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  7472971 taccatcatgtattatgctgttaataaattgattgatactttaaaatcatatgtgtattt 7472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 9044337 - 9044496
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9044337 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 9044436  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcatatgtttattt 196  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  9044437 taccatcatgtattatgctgttaataaattgattgatactttaaaatcatatgtgtattt 9044496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 30442132 - 30441973
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30442132 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 30442033  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcatatgtttattt 196  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  30442032 taccatcatgtattatgttgttaataaattgattgatactttaaaatcatatgtttattt 30441973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 40163917 - 40163996
Alignment:
Q  70 ctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattttaccatcatgtattat 152  Q
    |||||||||||||||||||| || ||| ||||||||| | ||||||   ||||||||| ||||||||||| || |||||||||    
T  40163917 ctaactttgttattccattatatatttagtttgtttggatgtgaat---tgatatttacatagattttacaattatgtattat 40163996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 29875203 - 29875234
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtatat 41  Q
    ||||||||||||||||||||||||||||||||    
T  29875203 acatcaaaagaaaaggaatggagggagtatat 29875234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 42793567 - 42793598
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtatat 41  Q
    ||||||||||||||||||||||||||||||||    
T  42793567 acatcaaaagaaaaggaatggagggagtatat 42793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 23090547 - 23090577
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtata 40  Q
    |||||||||||||||||||||||||||||||    
T  23090547 acatcaaaagaaaaggaatggagggagtata 23090577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 43
Target Start/End: Complemental strand, 23090326 - 23090293
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtatatcc 43  Q
    ||||||||||||||||||||||||||||| ||||    
T  23090326 acatcaaaagaaaaggaatggagggagtaaatcc 23090293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 41610401 - 41610372
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  41610401 acatcaaaagaaaaggaatggagggagtat 41610372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 12398974 - 12398946
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  12398974 acatcaaaagaaaaggaatggagggagta 12398946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 12399195 - 12399223
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  12399195 acatcaaaagaaaaggaatggagggagta 12399223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 34208566 - 34208538
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  34208566 acatcaaaagaaaaggaatggagggagta 34208538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 42757833 - 42757805
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  42757833 acatcaaaagaaaaggaatggagggagta 42757805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 196
Target Start/End: Original strand, 12742223 - 12742382
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12742223 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 12742322  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcatatgtttattt 196  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  12742323 taccatcatgtattatgctgttaataaattgattgatactttaaaatcatatgtgtattt 12742382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 23348566 - 23348417
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348566 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 23348467  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcat 186  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23348466 taccatcatgtattatgctgttaataaattgattgatactttaaaatcat 23348417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 18354893 - 18354734
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18354893 tatatcctaaatcgttgttcctgtagcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 18354794  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcatatgtttattt 196  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  18354793 taccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtattt 18354734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 10328611 - 10328462
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10328611 tatatcctaaatcgttgttcatgtatcttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 10328512  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcat 186  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10328511 taccatcatgtattatgctgttaataaattgattgatactttaaaatcat 10328462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 10112367 - 10112336
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtatat 41  Q
    ||||||||||||||||||||||||||||||||    
T  10112367 acatcaaaagaaaaggaatggagggagtatat 10112336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 43041098 - 43041129
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtatat 41  Q
    ||||||||||||||||||||||||||||||||    
T  43041098 acatcaaaagaaaaggaatggagggagtatat 43041129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 15234004 - 15234032
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  15234004 acatcaaaagaaaaggaatggagggagta 15234032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 43040877 - 43040849
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  43040877 acatcaaaagaaaaggaatggagggagta 43040849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 44104574 - 44104546
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  44104574 acatcaaaagaaaaggaatggagggagta 44104546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 7e-76; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 37 - 196
Target Start/End: Complemental strand, 43070968 - 43070809
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43070968 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 43070869  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcatatgtttattt 196  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  43070868 taccatcatgtattatgctcttaataaattgattgatactttaaaatcatatgtgtattt 43070809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 46467363 - 46467333
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtata 40  Q
    |||||||||||||||||||||||||||||||    
T  46467363 acatcaaaagaaaaggaatggagggagtata 46467333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 4405358 - 4405387
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  4405358 acatcaaaagaaaaggaatggagggagtat 4405387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 29427413 - 29427442
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  29427413 acatcaaaagaaaaggaatggagggagtat 29427442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 29890854 - 29890825
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  29890854 acatcaaaagaaaaggaatggagggagtat 29890825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 43701579 - 43701550
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  43701579 acatcaaaagaaaaggaatggagggagtat 43701550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 6387941 - 6387969
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  6387941 acatcaaaagaaaaggaatggagggagta 6387969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 17904191 - 17904163
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  17904191 acatcaaaagaaaaggaatggagggagta 17904163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 17904412 - 17904440
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  17904412 acatcaaaagaaaaggaatggagggagta 17904440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 26770207 - 26770179
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  26770207 acatcaaaagaaaaggaatggagggagta 26770179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 29723386 - 29723414
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  29723386 acatcaaaagaaaaggaatggagggagta 29723414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 29891075 - 29891103
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  29891075 acatcaaaagaaaaggaatggagggagta 29891103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 37179359 - 37179331
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  37179359 acatcaaaagaaaaggaatggagggagta 37179331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 37179580 - 37179608
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  37179580 acatcaaaagaaaaggaatggagggagta 37179608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 46467584 - 46467612
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  46467584 acatcaaaagaaaaggaatggagggagta 46467612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 7e-76; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 37 - 192
Target Start/End: Complemental strand, 19881697 - 19881542
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19881697 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 19881598  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcatatgttt 192  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  19881597 taccatcatgtattatgctgttaataaattgattgatactttaaaatcatgtgttt 19881542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 37982943 - 37983092
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37982943 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 37983042  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcat 186  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37983043 taccatcatgtattatgctgttaataaattgattgatactttaaaatcat 37983092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 53972872 - 53972723
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53972872 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 53972773  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcat 186  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53972772 taccatcatgtattatgctgttaataaattgattgatactttaaaatcat 53972723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Complemental strand, 41349399 - 41349368
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtatat 41  Q
    ||||||||||||||||||||||||||||||||    
T  41349399 acatcaaaagaaaaggaatggagggagtatat 41349368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 29371787 - 29371817
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtata 40  Q
    |||||||||||||||||||||||||||||||    
T  29371787 acatcaaaagaaaaggaatggagggagtata 29371817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 39518656 - 39518686
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtata 40  Q
    |||||||||||||||||||||||||||||||    
T  39518656 acatcaaaagaaaaggaatggagggagtata 39518686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 1352245 - 1352274
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  1352245 acatcaaaagaaaaggaatggagggagtat 1352274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 29014718 - 29014689
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  29014718 acatcaaaagaaaaggaatggagggagtat 29014689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 36737862 - 36737833
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  36737862 acatcaaaagaaaaggaatggagggagtat 36737833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 38855566 - 38855595
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  38855566 acatcaaaagaaaaggaatggagggagtat 38855595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 1352024 - 1351996
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  1352024 acatcaaaagaaaaggaatggagggagta 1351996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 18996995 - 18996967
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  18996995 acatcaaaagaaaaggaatggagggagta 18996967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 18997216 - 18997244
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  18997216 acatcaaaagaaaaggaatggagggagta 18997244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 18999534 - 18999506
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  18999534 acatcaaaagaaaaggaatggagggagta 18999506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 18999755 - 18999783
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  18999755 acatcaaaagaaaaggaatggagggagta 18999783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 32677726 - 32677754
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  32677726 acatcaaaagaaaaggaatggagggagta 32677754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 39528777 - 39528749
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  39528777 acatcaaaagaaaaggaatggagggagta 39528749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 39528998 - 39529026
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  39528998 acatcaaaagaaaaggaatggagggagta 39529026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 41349620 - 41349648
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  41349620 acatcaaaagaaaaggaatggagggagta 41349648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 46878984 - 46879012
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  46878984 acatcaaaagaaaaggaatggagggagta 46879012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 1189 - 1338
Alignment:
Q  37 tatatcctaaatcgttgttcctataacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 136  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1189 tatatcctaaatcgttgttcctgtaacttttccctaactttgttattccattacatttttggtttgtttgtaagtgaattgatgatatttaaatagattt 1288  T
Q  137 taccatcatgtattatgctgttaataaattgaatgatactttaaaatcat 186  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  1289 taccatcatgtattatgctgttaataaattgattgatattttaaaatcat 1338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 41
Target Start/End: Original strand, 27027660 - 27027691
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtatat 41  Q
    ||||||||||||||||||||||||||||||||    
T  27027660 acatcaaaagaaaaggaatggagggagtatat 27027691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 9740013 - 9739984
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  9740013 acatcaaaagaaaaggaatggagggagtat 9739984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 27024461 - 27024432
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  27024461 acatcaaaagaaaaggaatggagggagtat 27024432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 33837978 - 33838007
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  33837978 acatcaaaagaaaaggaatggagggagtat 33838007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 2509045 - 2509073
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  2509045 acatcaaaagaaaaggaatggagggagta 2509073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 9740235 - 9740263
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  9740235 acatcaaaagaaaaggaatggagggagta 9740263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 25106460 - 25106488
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  25106460 acatcaaaagaaaaggaatggagggagta 25106488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 28379196 - 28379224
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  28379196 acatcaaaagaaaaggaatggagggagta 28379224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 33837757 - 33837729
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  33837757 acatcaaaagaaaaggaatggagggagta 33837729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 45334304 - 45334276
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  45334304 acatcaaaagaaaaggaatggagggagta 45334276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 45334525 - 45334553
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  45334525 acatcaaaagaaaaggaatggagggagta 45334553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 4817297 - 4817267
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtata 40  Q
    |||||||||||||||||||||||||||||||    
T  4817297 acatcaaaagaaaaggaatggagggagtata 4817267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 4055512 - 4055483
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  4055512 acatcaaaagaaaaggaatggagggagtat 4055483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 10737729 - 10737700
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  10737729 acatcaaaagaaaaggaatggagggagtat 10737700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 46220508 - 46220537
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  46220508 acatcaaaagaaaaggaatggagggagtat 46220537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 47669147 - 47669118
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  47669147 acatcaaaagaaaaggaatggagggagtat 47669118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 48565066 - 48565095
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  48565066 acatcaaaagaaaaggaatggagggagtat 48565095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 9831531 - 9831503
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  9831531 acatcaaaagaaaaggaatggagggagta 9831503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 18126879 - 18126851
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  18126879 acatcaaaagaaaaggaatggagggagta 18126851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 33020234 - 33020206
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  33020234 acatcaaaagaaaaggaatggagggagta 33020206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 47669368 - 47669396
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  47669368 acatcaaaagaaaaggaatggagggagta 47669396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 27312142 - 27312113
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  27312142 acatcaaaagaaaaggaatggagggagtat 27312113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Original strand, 27312365 - 27312394
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  27312365 acatcaaaagaaaaggaatggagggagtat 27312394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 32274462 - 32274433
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  32274462 acatcaaaagaaaaggaatggagggagtat 32274433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Complemental strand, 8504761 - 8504733
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  8504761 acatcaaaagaaaaggaatggagggagta 8504733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 29302520 - 29302548
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  29302520 acatcaaaagaaaaggaatggagggagta 29302548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 19256214 - 19256185
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  19256214 acatcaaaagaaaaggaatggagggagtat 19256185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 39
Target Start/End: Complemental strand, 36016307 - 36016278
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagtat 39  Q
    ||||||||||||||||||||||||||||||    
T  36016307 acatcaaaagaaaaggaatggagggagtat 36016278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 38
Target Start/End: Original strand, 19257109 - 19257137
Alignment:
Q  10 acatcaaaagaaaaggaatggagggagta 38  Q
    |||||||||||||||||||||||||||||    
T  19257109 acatcaaaagaaaaggaatggagggagta 19257137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University