View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9006_low_5 (Length: 637)
Name: NF9006_low_5
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9006_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 12 - 628
Target Start/End: Complemental strand, 27878718 - 27878102
Alignment:
| Q |
12 |
atggacatcagccaaagatgtttcgacagtaaaactcgatgagtcgcattatttcttcactcttaagcttccacagagtgatgatgaagttttgaactat |
111 |
Q |
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| T |
27878718 |
atggccattagccaaagatgtttcaacagtaaaactcgatgagtcgcattatttcttcactcttaagcttccacagagtgatgatgaagttttgaactat |
27878619 |
T |
|
| Q |
112 |
ggattgacagtggcggcaaaagggtcaaagaaagttttgaagaaacttgatgaggttcttgaaaagtatagtcttctttctgttgagaaggtgaagggtg |
211 |
Q |
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| T |
27878618 |
ggattgacagtggcggcaaaagggtcaaagaaagttttgaagaaacttgatgaggttcttgaaaagtacagtcttctttctgttgagaaggtgaagggtg |
27878519 |
T |
|
| Q |
212 |
ttaaagggtgggaggttttggagaaaaaggaagatgtagaggaaaattctgctgctgcttattggacaacgttggcaccaaacgtggaggattatagtgg |
311 |
Q |
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| T |
27878518 |
ttaaagggtgggaggttttggagaaaaaggaagatgtagaggaaaattctgctgctgcttattggacaacgttggcaccaaacgtggaggattatagtgg |
27878419 |
T |
|
| Q |
312 |
aagatttggtagatggattgctgcaggttcaggacaaatgatcagaggaattttgtggtgtggtgatgttactgttgatagattgaaatggggtgatgat |
411 |
Q |
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| T |
27878418 |
aagatttggtagatggattgctgcaggttcaggacaaatgatcagaggaattttgtggtgcggtgatgttactgttgatagattgaaatggggtgatgat |
27878319 |
T |
|
| Q |
412 |
ttcatgaagaagaggttgcaacctggttcttctcaatcacagattagtccacttgccctgaatagtatgaaaaggtaagaaatttgaaaaatttctatcg |
511 |
Q |
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| T |
27878318 |
ttcatgaagaagaggttgcaacctggttcttctcaatcacagattagtccacttgccctgaatagtatgaaaaggtaagaaatttgaaaaaaatctatca |
27878219 |
T |
|
| Q |
512 |
ctgaatgttttgtttcgtgttttatgcaattttgatgatgttatgtatgtgggannnnnnncagtgttaagaagttgacaaagatgtctgagaaagtggc |
611 |
Q |
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| T |
27878218 |
ctgaatgttttgtttcgtgttttatgcaattttgatgatgttatgtatgtgggatttttttcagtgttaagaagttgacaaagatgtctgagaaagtggc |
27878119 |
T |
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| Q |
612 |
tcttggtgttctctctg |
628 |
Q |
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| T |
27878118 |
tcttggtgttctctctg |
27878102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 31870249 - 31870186
Alignment:
| Q |
361 |
attttgtggtgtggtgatgttactgttgatagattgaaatggggtgatgatttcatgaagaaga |
424 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||| |||| | |||||||||| |
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| T |
31870249 |
attttgtggtgtggggatgttactgttgataggttgaaatggggtaatgagattatgaagaaga |
31870186 |
T |
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