View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9006_low_6 (Length: 626)

Name: NF9006_low_6
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9006_low_6
NF9006_low_6
[»] chr4 (8 HSPs)
chr4 (1-608)||(2801529-2802134)
chr4 (1-308)||(1678686-1678994)
chr4 (404-608)||(1678995-1679199)
chr4 (1-47)||(21606595-21606641)
chr4 (1-39)||(41052607-41052645)
chr4 (1-38)||(9018880-9018917)
chr4 (1-41)||(7367565-7367605)
chr4 (1-45)||(27131676-27131720)
[»] chr6 (5 HSPs)
chr6 (2-55)||(32862750-32862803)
chr6 (1-41)||(34443051-34443091)
chr6 (1-45)||(2468476-2468520)
chr6 (1-41)||(8805968-8806008)
chr6 (1-45)||(29670905-29670948)
[»] chr8 (2 HSPs)
chr8 (1-41)||(16330993-16331033)
chr8 (9-45)||(30921032-30921068)
[»] chr3 (3 HSPs)
chr3 (1-40)||(2401481-2401520)
chr3 (1-40)||(35335613-35335652)
chr3 (1-41)||(33331951-33331991)
[»] chr7 (1 HSPs)
chr7 (1-43)||(27531846-27531888)
[»] chr2 (1 HSPs)
chr2 (1-83)||(8518044-8518126)
[»] chr1 (2 HSPs)
chr1 (1-55)||(303693-303747)
chr1 (7-41)||(33318858-33318892)
[»] chr5 (3 HSPs)
chr5 (5-45)||(25734621-25734661)
chr5 (1-41)||(26208013-26208053)
chr5 (1-37)||(29587692-29587728)


Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Complemental strand, 2802134 - 2801529
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacacatgttagacaccgggcacaccttcactct 100  Q
    |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2802134 aatttgggagaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacatatgttagacaccgggcacaccttcactct 2802035  T
Q  101 aaactagcctaagatccttaatgatgggatagtttgtccattctttttatggtaaaagaccaaaatagtgcacaaggtggtacacttaagatcataatat 200  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2802034 aaactagccgaagatccttaatgatgggatagtttgtccattttttttatggtaaaagaccaaaatagtgcacaaggtggtacacttaagatcataatat 2801935  T
Q  201 attaaacttgattttctccttagacagatgatctaatataattttatgaaaaaatagtataaatctatataccttttggatcttatttaagcttgagatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2801934 attaaacttgattttctccttagacagatgatctaatataattttatgaaaaaatagtataaatctatataccttttggatcttatttaagcttgagatt 2801835  T
Q  301 attgatatttgataatatgtagaggcaatctgcacgcataaaaatgaataagttgtaaacaatacaaactactactacctattgaatgtcaaccagagtg 400  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2801834 attgatatttgataatatgt--aggcaatctgcacgcataaaaatgaataagttgtaaacaatacaaactactactacccattgaatgtcaaccagagtg 2801737  T
Q  401 gaaatttgaagccaagggtaaatgtatctcatttagtggaacataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcctaattctgc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2801736 gaaatttgaagccaagggtaaatgtatctcatttagtggaacataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcctaattctgc 2801637  T
Q  501 agtaacagcagctgattagcgacatggaaagcaaacgaaatacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtttggtccat 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2801636 agtaacagcagctgattagcgacatggaaagcaaacgaaatacgggtagaacaagaaaatcctctagagggattgagacttaactttctgtttggtccat 2801537  T
Q  601 tccatcac 608  Q
    ||||||||    
T  2801536 tccatcac 2801529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 1678686 - 1678994
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacacatgttagacaccgggcacaccttcactct 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1678686 aatttgagaaaatgaaagtgattaaatgtaactacatgtgttggtatcttgttggtttctgacaccgacacgtgttagacaccgggcacaccttcactct 1678785  T
Q  101 aaactagcctaagatccttaatgatgggatagtttgtccattctttttatggtaaaagaccaaaatagtgcacaaggtggtacacttaagatcataatat 200  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  1678786 aaactagccgaagatccttaatgatggggtagtttgtccattctttttatggtaaaagaccaaaatattggacaaggtggtacacttaagatcataatat 1678885  T
Q  201 attaaacttgattttctcctt-agacagatgatctaatataattttatgaaaaaatagtataaatctatataccttttggatcttatttaagcttgagat 299  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1678886 attaaacttgattttctccttaagacagatgatctaatataattttatgaaaaaatagtataaatctatataccttttggatcttatttaagcttgagat 1678985  T
Q  300 tattgatat 308  Q
    |||||||||    
T  1678986 tattgatat 1678994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 404 - 608
Target Start/End: Original strand, 1678995 - 1679199
Alignment:
Q  404 atttgaagccaagggtaaatgtatctcatttagtggaacataggaaatgtttaatctaaagacagttcttcagttgcacctgcactcctaattctgcagt 503  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  1678995 atttgaagccaagggtaaatgcatctcatttagtggaacataggaaatgtttaatctgaagacaattcttcagttgcacctgcactcctaattctgcagt 1679094  T
Q  504 aacagcagctgattagcgacatggaaagcaaacgaaatacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtttggtccattcc 603  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1679095 aacagcagctgattagcgacatggaaagcagacgaaatacgggtcgaacaagaaaatcctctagagggattgagacttaactttctgtttggtccattcc 1679194  T
Q  604 atcac 608  Q
    |||||    
T  1679195 atcac 1679199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21606641 - 21606595
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtat 47  Q
    ||||| ||||||| ||||||||||| |||||| ||||||||||||||    
T  21606641 aatttaagaaaataaaagtgattaagtgtaactacatgtgttggtat 21606595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 41052607 - 41052645
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgt 39  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  41052607 aatttaagaaaatgaaagtaattaaatgtaaccacatgt 41052645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9018917 - 9018880
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatg 38  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  9018917 aatttgagaaaatgaaagtaattgaatgtaaccacatg 9018880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7367565 - 7367605
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 41  Q
    |||||||||||||||| |||||| || ||||||||||||||    
T  7367565 aatttgagaaaatgaaggtgattgaacgtaaccacatgtgt 7367605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27131720 - 27131676
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 45  Q
    ||||| |||||||| |||| ||| |||||||||||||||||||||    
T  27131720 aatttaagaaaatggaagtaattgaatgtaaccacatgtgttggt 27131676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 32862803 - 32862750
Alignment:
Q  2 atttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttgg 55  Q
    |||| ||||||||||||||||| ||||||||||| |||||  ||||||||||||    
T  32862803 atttaagaaaatgaaagtgattgaatgtaaccacgtgtgtcagtatcttgttgg 32862750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34443091 - 34443051
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 41  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  34443091 aatttgagaaagtgaaagtgattgaatgtaaccacatgtgt 34443051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 2468520 - 2468476
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 45  Q
    ||||| |||||||| |||| ||| |||||||||||||||||||||    
T  2468520 aatttaagaaaatggaagtaattgaatgtaaccacatgtgttggt 2468476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8806008 - 8805968
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 41  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  8806008 aatttgagaaattgaaagtgattgaatgaaaccacatgtgt 8805968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29670905 - 29670948
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 45  Q
    ||||||||||||||| | ||||| |||||||||||||||||||||    
T  29670905 aatttgagaaaatgaca-tgattcaatgtaaccacatgtgttggt 29670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16330993 - 16331033
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 41  Q
    ||||| ||||||||||| |||||||||||||||||||||||    
T  16330993 aatttaagaaaatgaaaatgattaaatgtaaccacatgtgt 16331033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 30921032 - 30921068
Alignment:
Q  9 aaaatgaaagtgattaaatgtaaccacatgtgttggt 45  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  30921032 aaaatgaaagtgattgaatgtaagcacatgtgttggt 30921068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2401520 - 2401481
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtg 40  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  2401520 aatttgagaaaatcaaagtgattaaatgtaactacatgtg 2401481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35335613 - 35335652
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtg 40  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  35335613 aatttgagaaaatgaaagtgattaaatgcaaccacttgtg 35335652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33331991 - 33331951
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 41  Q
    ||||||||||||| |||||||||||||||||  ||||||||    
T  33331991 aatttgagaaaataaaagtgattaaatgtaattacatgtgt 33331951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 27531888 - 27531846
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttg 43  Q
    ||||||| ||||||||||||||||||||||| || ||||||||    
T  27531888 aatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgttg 27531846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8518044 - 8518126
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacacatgttagacacc 83  Q
    |||||||||||||  |||| ||| |||||||| | |||||| ||| || ||||||  |||||||| ||||||||| |||||||    
T  8518044 aatttgagaaaatagaagtaattgaatgtaactaaatgtgtcggtgtcgtgttggcatctgacacagacacatgtcagacacc 8518126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 303693 - 303747
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttgg 55  Q
    ||||||||||||||||||| ||| |||||||||||| ||||  ||||| ||||||    
T  303693 aatttgagaaaatgaaagtaattgaatgtaaccacaagtgtcagtatcgtgttgg 303747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 7 - 41
Target Start/End: Original strand, 33318858 - 33318892
Alignment:
Q  7 agaaaatgaaagtgattaaatgtaaccacatgtgt 41  Q
    ||||||||| |||||||||||||||||||||||||    
T  33318858 agaaaatgagagtgattaaatgtaaccacatgtgt 33318892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 25734661 - 25734621
Alignment:
Q  5 tgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 45  Q
    ||||||||||||||||||||||| |||| |||| |||||||    
T  25734661 tgagaaaatgaaagtgattaaatataactacatttgttggt 25734621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26208053 - 26208013
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 41  Q
    ||||||||||||| |||||| || |||||||||||||||||    
T  26208053 aatttgagaaaataaaagtgtttgaatgtaaccacatgtgt 26208013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29587692 - 29587728
Alignment:
Q  1 aatttgagaaaatgaaagtgattaaatgtaaccacat 37  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  29587692 aatttaagaaaatggaagtgattaaatgtaaccacat 29587728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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