View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9006_low_8 (Length: 607)

Name: NF9006_low_8
Description: NF9006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9006_low_8
NF9006_low_8
[»] chr7 (3 HSPs)
chr7 (4-471)||(2180935-2181401)
chr7 (469-607)||(2180726-2180864)
chr7 (1-74)||(2181402-2181475)
[»] chr2 (1 HSPs)
chr2 (139-199)||(15199665-15199725)
[»] scaffold0018 (1 HSPs)
scaffold0018 (141-183)||(191809-191851)
[»] chr6 (1 HSPs)
chr6 (158-199)||(9321570-9321611)
[»] chr3 (1 HSPs)
chr3 (151-200)||(5431720-5431769)
[»] chr5 (1 HSPs)
chr5 (32-88)||(18901503-18901559)
[»] chr8 (2 HSPs)
chr8 (39-136)||(18358408-18358505)
chr8 (142-199)||(1811945-1812002)


Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 4 - 471
Target Start/End: Complemental strand, 2181401 - 2180935
Alignment:
Q  4 ttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagttatattaaga 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181401 ttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagttatattaaga 2181302  T
Q  104 tgtggttacaaattggattttatgtggcaatatggagttttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactctatt 203  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2181301 tgtggttacaaattggattt-atgtggcaatatggagttttcattgaatgtcaatgtaaaactaatttacgccgatagtgtatcaccattaaactctatt 2181203  T
Q  204 ttgaaatggcataaggatgactaactttctctcgagatggctgaatagcatctgaagcgattcaactattagtattatacaaaactgatccatataaatg 303  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181202 ttgaaatggcataaggatgactaactttctctcgaggtggctgaatagcatctgaagcgattcaactattagtattatacaaaactgatccatataaatg 2181103  T
Q  304 ttgttgaattttcttttattattaaaaatcattaataagtcaaaataaaagaacatgaaaagtaaacttacaactgaaatgccacctgctattgcagcat 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181102 ttgttgaattttcttttattattaaaaatcattaataagtcaaaataaaagaacatgaaaagtaaacttacaactgaaatgccacctgctattgcagcat 2181003  T
Q  404 ttgcagcttccaatgccacttctgcactatatgtaagtgacaaacaaaaagtaagccaacataaacag 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181002 ttgcagcttccaatgccacttctgcactatatgtaagtgacaaacaaaaagtaagccaacataaacag 2180935  T

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Target: chr7; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 469 - 607
Target Start/End: Complemental strand, 2180864 - 2180726
Alignment:
Q  469 cagttgttattgttaataatttctccgtcaccagagttcgaatccagttcctttaactccttataacatgnnnnnnnntgtccaagttcagcagaaaggg 568  Q
    ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  2180864 cagttgttattgttaataatttctccgtcaccagagtccgaacccagttcctttaactccttataacatgaaaaagaatgtccaagttcagcagaaaggg 2180765  T
Q  569 aatggacaaacacacacgcgcgcagacatacacaaggta 607  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2180764 aatggacaaacacacacgctcgcagacatacacaaggta 2180726  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2181475 - 2181402
Alignment:
Q  1 ctcttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatga 74  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2181475 ctcttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatga 2181402  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 199
Target Start/End: Original strand, 15199665 - 15199725
Alignment:
Q  139 agttttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactc 199  Q
    ||||||||||| ||||||||||||||||||||||||  || |||| ||| |||||||||||    
T  15199665 agttttcattgtatgtcaatgtaaaactaatttacatagacagtgcatctccattaaactc 15199725  T

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Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 191809 - 191851
Alignment:
Q  141 ttttcattgaatgtcaatgtaaaactaatttacaccgatagtg 183  Q
    ||||||||||||||||||||||||||| |||||||| ||||||    
T  191809 ttttcattgaatgtcaatgtaaaactattttacaccaatagtg 191851  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 9321570 - 9321611
Alignment:
Q  158 tgtaaaactaatttacaccgatagtgtatcaccattaaactc 199  Q
    ||||||||||||||||||||| |||| |||||||||||||||    
T  9321570 tgtaaaactaatttacaccgacagtgcatcaccattaaactc 9321611  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 151 - 200
Target Start/End: Complemental strand, 5431769 - 5431720
Alignment:
Q  151 atgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactct 200  Q
    |||||| ||||||||||||||||||||| ||||||| || ||||||||||    
T  5431769 atgtcagtgtaaaactaatttacaccgacagtgtatgactattaaactct 5431720  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 18901503 - 18901559
Alignment:
Q  32 atgcactgtcattgtagactaattttacactgacaactaatgagaattcaatatttt 88  Q
    ||||||||||| |||| |||||||||||| ||||| ||||||||||| || ||||||    
T  18901503 atgcactgtcagtgtaaactaattttacattgacatctaatgagaatccagtatttt 18901559  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 18358505 - 18358408
Alignment:
Q  39 gtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagtt-atattaagatgtggttacaaattggattttatgtggcaatat 136  Q
    |||| |||| |||||||||||||||||  | |||||||||  | ||| |||||||| || |||| ||||||||||||| |||| |||||||||| ||||    
T  18358505 gtcagtgtaaactaattttacactgacgtccaatgagaatcaagtatgttgcagttaattttaaaatgtggttacaaagtgga-tttatgtggcgatat 18358408  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Original strand, 1811945 - 1812002
Alignment:
Q  142 tttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactc 199  Q
    |||||||| |||||| |||||||||||| | || ||| |||| |||||||||||||||    
T  1811945 tttcattggatgtcagtgtaaaactaatatgcagcgacagtgcatcaccattaaactc 1812002  T

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