View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9007_high_3 (Length: 425)
Name: NF9007_high_3
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9007_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 15 - 416
Target Start/End: Original strand, 3376561 - 3376962
Alignment:
| Q |
15 |
acatcatccacctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaat |
114 |
Q |
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| T |
3376561 |
acatcatccacctcaaaataaaggagatagttatcatgttgtagcattgacatcaacaacattaggttctttggaacttgtatctcatagtcaaggcaat |
3376660 |
T |
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| Q |
115 |
ggttttgttccatattcgactttgctcaaagcagacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtg |
214 |
Q |
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| T |
3376661 |
ggttttgttccatattcgactttgctcaaagcaaacaatacctcagaaaacggattcgaggttggaaaaggtttcatgttttccaatggtaaggttagtg |
3376760 |
T |
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| Q |
215 |
agaatttcaaagaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacacc |
314 |
Q |
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| T |
3376761 |
agaatttcaaagaagaggttgaaaatgaggtgaagacatggtctaatatgatcgaggagaagttaccaaaatctattgccaagaattcaatcacaacacc |
3376860 |
T |
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| Q |
315 |
accttgtgaggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgat |
414 |
Q |
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| T |
3376861 |
accttgtgaggacatcatcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttctcttttgat |
3376960 |
T |
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| Q |
415 |
gt |
416 |
Q |
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|| |
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| T |
3376961 |
gt |
3376962 |
T |
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Back To:
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 417
Target Start/End: Original strand, 2372397 - 2372483
Alignment:
| Q |
331 |
atcaacacatgggaactaatggaaggacttgaagatacaagtccttttcaatcaccaaatcaattaagaagtttgtcttttgatgtc |
417 |
Q |
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| T |
2372397 |
atcaacacatgggaattaatggaaggtcttgaagatattagtccttttcgatcgccgaatcacttcaaaagcttttcttttgatgtc |
2372483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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