View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9007_low_12 (Length: 418)

Name: NF9007_low_12
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9007_low_12
NF9007_low_12
[»] chr8 (6 HSPs)
chr8 (64-407)||(40118605-40118948)
chr8 (250-407)||(40123164-40123321)
chr8 (22-65)||(22550962-22551005)
chr8 (22-63)||(10749771-10749812)
chr8 (22-63)||(34234517-34234558)
chr8 (29-65)||(34235227-34235263)
[»] chr3 (4 HSPs)
chr3 (267-387)||(44988040-44988160)
chr3 (22-65)||(8475759-8475802)
chr3 (22-65)||(32200289-32200332)
chr3 (22-63)||(42165098-42165139)
[»] chr5 (6 HSPs)
chr5 (22-64)||(14760-14802)
chr5 (22-63)||(42912975-42913016)
chr5 (22-63)||(43094674-43094715)
chr5 (22-60)||(31787489-31787527)
chr5 (22-63)||(8537149-8537190)
chr5 (22-63)||(21041011-21041052)
[»] chr4 (4 HSPs)
chr4 (22-65)||(16984259-16984302)
chr4 (22-63)||(3186161-3186202)
chr4 (22-63)||(16983456-16983497)
chr4 (22-62)||(16473777-16473817)
[»] chr2 (3 HSPs)
chr2 (22-63)||(23346715-23346756)
chr2 (22-63)||(23347425-23347466)
chr2 (22-63)||(28419342-28419383)
[»] chr6 (2 HSPs)
chr6 (22-65)||(26422913-26422956)
chr6 (22-63)||(3501086-3501127)
[»] chr1 (4 HSPs)
chr1 (22-64)||(46886485-46886527)
chr1 (22-63)||(22524061-22524102)
chr1 (22-63)||(49426648-49426689)
chr1 (22-62)||(98020-98060)
[»] chr7 (1 HSPs)
chr7 (24-65)||(43686948-43686989)


Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 64 - 407
Target Start/End: Original strand, 40118605 - 40118948
Alignment:
Q  64 aagttttgtct-tgtcattaattctccatccttagcaccactaatctttggcagtcatgtgannnnnnnnnataagttcagccatgtgaaatttaatttg 162  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||         |||||||||||||||||||||||||||||    
T  40118605 aagttttgtctgtgtcattatttctccatccttagcaccactaatctttggcagtcgtgtgatttttttt-ataagttcagccatgtgaaatttaatttg 40118703  T
Q  163 tgagctatgcctgtgacatatatttg-gtgaggccaagtagaagttatgcttaaatttgttggcattagtaaaacagtaagaggaaatattttactcttg 261  Q
    |||||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40118704 tgagctatgcctatgacatatatttttgtgaggtcaagtagaagttatgcttaaatttgttggcattagtaaa-cagtaagaggaaatattttactcttg 40118802  T
Q  262 gttgcaggaagaagatgatttgatgattagaagattcttacgagctcgtgatttcgatgttgagaaggcttcagcaatgttcctaaagtacttgaaatgg 361  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  40118803 gttgcaggaggaagatgatttgatgattagaagattcttacgagctcgtgatttagatgtggaaaaggcttcagcaatgttcctaaagtacttgaaatgg 40118902  T
Q  362 agacattcatttgttccaaatggttccatatctctatcacaggttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40118903 agacattcatttgttccaaatggttccatatctctatcacaggttc 40118948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 250 - 407
Target Start/End: Original strand, 40123164 - 40123321
Alignment:
Q  250 attttactcttggttgcaggaagaagatgatttgatgattagaagattcttacgagctcgtgatttcgatgttgagaaggcttcagcaatgttcctaaag 349  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||  |||| ||||||||||| ||||| |||||||||||||||||||||||||||    
T  40123164 attttactcttggttgcaggaagaagatgatttgatgatcagaagatttctacgtgctcgtgatttagatgtggagaaggcttcagcaatgttcctaaag 40123263  T
Q  350 tacttgaaatggagacattcatttgttccaaatggttccatatctctatcacaggttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40123264 tacttgaaatggagacattcatttgttccaaatggttccatatctctatcacaggttc 40123321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 22550962 - 22551005
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctcaa 65  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||    
T  22550962 tcgtgtggcacagccttatcaaatgtgtaaacaacaattctcaa 22551005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 10749771 - 10749812
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||||||||||  ||| |||||||||||||||||    
T  10749771 tcgtgtggcacaaccttatgtaatgtgtaaacagcaattctc 10749812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 34234558 - 34234517
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||| ||||||||||| |||||||| ||||||||    
T  34234558 tcgtgtggcacagccttatcaaatgtgtaaacaacaattctc 34234517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 34235227 - 34235263
Alignment:
Q  29 gcacaaccttatcaaatttgtaaacagcaattctcaa 65  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  34235227 gcacagccttatcaaatgtgtaaacagcaattctcaa 34235263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 267 - 387
Target Start/End: Original strand, 44988040 - 44988160
Alignment:
Q  267 aggaagaagatgatttgatgattagaagattcttacgagctcgtgatttcgatgttgagaaggcttcagcaatgttcctaaagtacttgaaatggagaca 366  Q
    |||||| |||||||||||||||||||||||||||  ||||||||||||| ||||| || ||||||||||| ||||||||||||||| ||||||||||| |    
T  44988040 aggaagtagatgatttgatgattagaagattcttgagagctcgtgatttagatgtagataaggcttcagctatgttcctaaagtacatgaaatggagaaa 44988139  T
Q  367 ttcatttgttccaaatggttc 387  Q
     ||||||||||||| ||||||    
T  44988140 atcatttgttccaagtggttc 44988160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 8475802 - 8475759
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctcaa 65  Q
    |||||||||||||||||||  ||| |||||||||||||||||||    
T  8475802 tcgtgtggcacaaccttatgtaatatgtaaacagcaattctcaa 8475759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 32200289 - 32200332
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctcaa 65  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||    
T  32200289 tcgtgtggtacaaccttatcaaatgtgtaaacagtaattctcaa 32200332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 42165139 - 42165098
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||| ||||||||||| |||||||| ||||||||    
T  42165139 tcgtgtggcacagccttatcaaatgtgtaaacaacaattctc 42165098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 14760 - 14802
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctca 64  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  14760 tcgtgtggcacaaccttatcaaatgtgtaaacagcaattctca 14802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 42912975 - 42913016
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  42912975 tcgtgtggcacagccttatcaaatgtgtaaacagcaattctc 42913016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 43094674 - 43094715
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  43094674 tcgtgtggcataaccttatcaaatgtgtaaacagcaattctc 43094715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 31787527 - 31787489
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaatt 60  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  31787527 tcgtgtggcacagccttatcaaatgtgtaaacagcaatt 31787489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 8537190 - 8537149
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||| ||||||||||| |||||| ||||||||||    
T  8537190 tcgtgtggcacagccttatcaaatgtgtaaatagcaattctc 8537149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 21041052 - 21041011
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||| ||||||||||||| |||||| ||||||||||    
T  21041052 tcgtgtggcataaccttatcaaatgtgtaaatagcaattctc 21041011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 16984259 - 16984302
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctcaa 65  Q
    |||||||||||| ||||||||||| |||||||||||||||||||    
T  16984259 tcgtgtggcacagccttatcaaatgtgtaaacagcaattctcaa 16984302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 3186161 - 3186202
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  3186161 tcgtgtggcacagccttatcaaatgtgtaaacagcaattctc 3186202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 16983497 - 16983456
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||| ||||||||||| |||||||| ||||||||    
T  16983497 tcgtgtggcacagccttatcaaatgtgtaaacaacaattctc 16983456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 16473777 - 16473817
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattct 62  Q
    |||||||||||||||||||  ||| ||||||||||||||||    
T  16473777 tcgtgtggcacaaccttatgtaatgtgtaaacagcaattct 16473817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 23346756 - 23346715
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  23346756 tcgtgtggcacaaccttatcaaatgtgtaaacaacaattctc 23346715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 23347425 - 23347466
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  23347425 tcgtgtggcacagccttatcaaatgtgtaaacagcaattctc 23347466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 28419383 - 28419342
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  28419383 tcgtgtggcacagccttatcaaatgtgtaaacagcaattctc 28419342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 26422956 - 26422913
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctcaa 65  Q
    |||||| ||||||||||||||||| |||||||| ||||||||||    
T  26422956 tcgtgtagcacaaccttatcaaatatgtaaacaacaattctcaa 26422913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 3501127 - 3501086
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||||| | ||||||||||| |||||||||||||||||    
T  3501127 tcgtgtggcagagccttatcaaatgtgtaaacagcaattctc 3501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 46886485 - 46886527
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctca 64  Q
    |||||| ||||||||||||||||| |||||||| |||||||||    
T  46886485 tcgtgtagcacaaccttatcaaatgtgtaaacaacaattctca 46886527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 22524102 - 22524061
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    ||||||||||||||||||| |||| ||||||| |||||||||    
T  22524102 tcgtgtggcacaaccttatgaaatgtgtaaacggcaattctc 22524061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 49426689 - 49426648
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattctc 63  Q
    |||||||| ||| ||||||||||| |||||||||||||||||    
T  49426689 tcgtgtggtacagccttatcaaatgtgtaaacagcaattctc 49426648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 98020 - 98060
Alignment:
Q  22 tcgtgtggcacaaccttatcaaatttgtaaacagcaattct 62  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  98020 tcgtgtggcacagccttatcaaatgtgtaaacaacaattct 98060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 43686948 - 43686989
Alignment:
Q  24 gtgtggcacaaccttatcaaatttgtaaacagcaattctcaa 65  Q
    |||||||||||||||||||||| ||  |||||||||||||||    
T  43686948 gtgtggcacaaccttatcaaatgtgggaacagcaattctcaa 43686989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University