View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9007_low_13 (Length: 411)
Name: NF9007_low_13
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9007_low_13 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 7828156 - 7827749
Alignment:
| Q |
1 |
ctggtaggtctgttaacaccaaaggcattccaacaaaagagttcgagtgagtcacaatcatttagtgcctccattttaaatttc--------agcatcat |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7828156 |
ctggtaggtctgttaacaccaaaggcattccaacaaaagagttcgagtgagtcacaatcatttagtgcctccattttaaatttctcaatttcagcatcat |
7828057 |
T |
|
| Q |
93 |
gataatctaacacagtttcatcccttgttgttattatgatcctactaccagaaccaaaccaatcacgtcctccagccaataagttcaatttttctatgct |
192 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7828056 |
gataatctaacacagtttcatcccttgttgttattatgatcctactaccagaaccaaaccaatcacgtcctccagccaataagttcaatttttctatgct |
7827957 |
T |
|
| Q |
193 |
atcaatatcatccaaaaccagaagaactcttctcttgcaagtctgcgtttgatttcaacacttcctttgaaattacttcccaccattgttccaatatctt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
7827956 |
atcaatatcatccaaaaccagaagaactcttctcttgcaagtctgcgtttgatttcaacacttcatttgaaattacttcccaccattgttccaatatctt |
7827857 |
T |
|
| Q |
293 |
cacccatctgacatagaagtgtcttttggagatcttctaggcctttgatgcctttgtctgatttttctctgacattaagnnnnnnngttgacgattcaaa |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7827856 |
cacccatctgacatagaagtgtcttttggagatcttctaggcctttgatgcctttgtctgatttttctctgacattaagaagaaaagttgacgattcaaa |
7827757 |
T |
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| Q |
393 |
atgatgtc |
400 |
Q |
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|||||||| |
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| T |
7827756 |
atgatgtc |
7827749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 7824658 - 7824555
Alignment:
| Q |
120 |
ttgttattatgatcctactaccagaaccaaaccaatcacgtcctccagccaataagttcaatttttctatgctatcaatatcatccaaaaccagaagaac |
219 |
Q |
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|||||| ||| |||| ||||||||| ||||||| || || |||||||||| ||||| ||||||||| ||| ||||||| |||||||||||||||||| |
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| T |
7824658 |
ttgttaatatcatccagctaccagaagcaaaccagtcgtgttctccagccaacaagttatatttttctacgctgtcaatattatccaaaaccagaagaac |
7824559 |
T |
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| Q |
220 |
tctt |
223 |
Q |
| |
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|||| |
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| T |
7824558 |
tctt |
7824555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 7815166 - 7815063
Alignment:
| Q |
120 |
ttgttattatgatcctactaccagaaccaaaccaatcacgtcctccagccaataagttcaatttttctatgctatcaatatcatccaaaaccagaagaac |
219 |
Q |
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| T |
7815166 |
ttgttaatatcatccagctaccagaagcaaaccagtcgcgttctcaagccaacaagttatatttttctacgctgtcaatattattcaaaaccagaagaac |
7815067 |
T |
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| Q |
220 |
tctt |
223 |
Q |
| |
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|||| |
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| T |
7815066 |
tctt |
7815063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 7838338 - 7838404
Alignment:
| Q |
116 |
cttgttgttattatgatcctactaccagaaccaaaccaatcacgtcctccagccaataagttcaatt |
182 |
Q |
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|||||||||| ||||| || ||||||||||||||||||||| |||||||||| ||| | ||||||| |
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| T |
7838338 |
cttgttgttacaatgattctgctaccagaaccaaaccaatcatgtcctccagctaatgatttcaatt |
7838404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 39620527 - 39620469
Alignment:
| Q |
113 |
tcccttgttgttattatgatcctactaccagaaccaaaccaatcacgtcctccagccaa |
171 |
Q |
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| T |
39620527 |
tcccttgtagttataatgatcctactacctgggccaaaccaatcacttcctcctgccaa |
39620469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 29443132 - 29443177
Alignment:
| Q |
116 |
cttgttgttattatgatcctactaccagaaccaaaccaatcacgtc |
161 |
Q |
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||||||||||| |||||| |||| ||| |||||||||||||||||| |
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| T |
29443132 |
cttgttgttatgatgatcttacttccaaaaccaaaccaatcacgtc |
29443177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 57418 - 57454
Alignment:
| Q |
135 |
tactaccagaaccaaaccaatcacgtcctccagccaa |
171 |
Q |
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| T |
57418 |
tactaccaggaccaaaccaatcaagtcctccagccaa |
57454 |
T |
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