View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9007_low_14 (Length: 403)
Name: NF9007_low_14
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9007_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 15 - 385
Target Start/End: Original strand, 41919276 - 41919655
Alignment:
| Q |
15 |
aatactagaaaagaaaatgcaacattgggaaacactaagaaaaattcactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagca |
114 |
Q |
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| T |
41919276 |
aatactagaaaagaaaatgcaacattgggaaacactaagaaaaatccactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagca |
41919375 |
T |
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| Q |
115 |
gtaagagatgcaaatgttaatgaagttgctacagctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggt--------------aaa |
200 |
Q |
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| T |
41919376 |
gtaagagatgcaaatgttaatgaagttgctgcagctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggttagtttgtagttaataa |
41919475 |
T |
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| Q |
201 |
aaatatttagtttttaacttttgacatgttattattgagataattataattagtacgtacgtacattatatatttgtaggttgcattgaagggatttatg |
300 |
Q |
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| T |
41919476 |
taatatata-tatataacttttgacatgttattattgagataattataatta----gtacgtacattatatatttgtaggttgcattgaagggatttatg |
41919570 |
T |
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| Q |
301 |
gttaaccatggaagcatgaatttagaatggttaaaagatataccaccaaatgaagcaaagtaagtataatcatctatgtgactat |
385 |
Q |
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| T |
41919571 |
gttaaccatggaagcatgaatttagaatggttaaaagatataccaccaaatgaagcaaagtaagtataatcatctatgtgactat |
41919655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 23 - 214
Target Start/End: Original strand, 1688804 - 1688995
Alignment:
| Q |
23 |
aaaagaaaatgcaacattgggaaacactaagaaaaattcactctaaaagtgatcaacacattgatcatgcggactctgttgattgggaagcagtaagaga |
122 |
Q |
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| T |
1688804 |
aaaagaaaaggcaaaagtgggaggcactaagaaaaatccacagtagaagtgatcgacacattgaccatgtggattctattgattgggaagcagtaagaaa |
1688903 |
T |
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| Q |
123 |
tgcaaatgttaatgaagttgctacagctattaaaaagcgtggtcaacaaaacataattgcttataaaattcaggtaaaaaatatttagtttt |
214 |
Q |
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| T |
1688904 |
tgccaaagttggtgaagttgctgaagctattaaaatgcgtggtcaacataacattattgctaaaaaaatacaggtacaaaatatatagtttt |
1688995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 1689080 - 1689150
Alignment:
| Q |
305 |
accatggaagcatgaatttagaatggttaaaagatataccaccaaatgaagcaaagtaagtataatcatct |
375 |
Q |
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| T |
1689080 |
accatggaaccacggatttagaatggctgaaatatattccaccaaacgaagcaaagtaagtctaaacatct |
1689150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 1305125 - 1305195
Alignment:
| Q |
97 |
tctgttgattgggaagcagtaagagatgcaaatgttaatgaagttgctacagctattaaaaagcgtggtca |
167 |
Q |
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| T |
1305125 |
tctgttgattgggaaacggtaagaaatgcaaaagctaaagaagtggctaaagctattaaaaaccgtggtca |
1305195 |
T |
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