View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9007_low_16 (Length: 397)
Name: NF9007_low_16
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9007_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 387
Target Start/End: Complemental strand, 30545436 - 30545068
Alignment:
| Q |
18 |
taaactgacaataaaatcatctgaaaacaatttcgtcagcaacgtgcacagtcccatctgtcgaaaggccgcatcatagcccttttcctcacttatcaag |
117 |
Q |
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| T |
30545436 |
taaactgacaataaaatcatctgaaaacaatttcgtcagcaacgtgcacagtcccatctgtcgaaaggccgcatcatagcccttttcctcacttatcaag |
30545337 |
T |
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| Q |
118 |
ccccataagagttgagatgtgaaaatagagaaaaacatgagacagacaaaattgagaggatccatttccacaaggatccaagctcatgtgtcttatttcc |
217 |
Q |
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| T |
30545336 |
ccccataagagttgagatgtgaaaatagagaaaa-catgagacagacaaaattgagaggatccatttccacaaggatccaagctcatgtgtcttatttcc |
30545238 |
T |
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| Q |
218 |
ttcaagagaaaggtctttcaaagtcttaagcaacataacattttctcatgattcaacactccaaaacaagtatnnnnnnntaacaataggcagcattcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30545237 |
ttcaagagaaaggtctttcaaagtcttaagcaacataacattttctcaagattcaacactccaaaacaagtataaaaaaataacaataggcagcattcta |
30545138 |
T |
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| Q |
318 |
ctaatacgatcttatcaacatgttgaacacttgtaatttgatagataccttaaataaaccattctctctg |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30545137 |
ctaatacgatcttatcaacatgttgaacacttgtaatttgatagataccttaaataaaccattctctctg |
30545068 |
T |
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