View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9007_low_17 (Length: 269)

Name: NF9007_low_17
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9007_low_17
NF9007_low_17
[»] chr2 (3 HSPs)
chr2 (123-237)||(3205831-3205945)
chr2 (236-269)||(9293610-9293643)
chr2 (237-269)||(35160756-35160788)
[»] chr6 (7 HSPs)
chr6 (235-269)||(28675145-28675179)
chr6 (236-269)||(6127273-6127306)
chr6 (236-269)||(18365607-18365640)
chr6 (236-269)||(18370871-18370904)
chr6 (236-269)||(23291118-23291151)
chr6 (237-269)||(33695361-33695393)
chr6 (237-269)||(33696695-33696727)
[»] scaffold0096 (1 HSPs)
scaffold0096 (236-269)||(41009-41042)
[»] chr8 (3 HSPs)
chr8 (236-269)||(1645999-1646032)
chr8 (236-269)||(15187558-15187591)
chr8 (236-269)||(32064743-32064776)
[»] chr7 (3 HSPs)
chr7 (236-269)||(15329271-15329304)
chr7 (236-269)||(45637710-45637743)
chr7 (237-269)||(15577884-15577916)
[»] chr5 (4 HSPs)
chr5 (236-269)||(2477634-2477667)
chr5 (236-269)||(6043545-6043578)
chr5 (237-269)||(3362777-3362809)
chr5 (237-269)||(38899760-38899792)
[»] chr4 (4 HSPs)
chr4 (236-269)||(10442823-10442856)
chr4 (237-269)||(4751445-4751477)
chr4 (237-269)||(31078853-31078885)
chr4 (237-269)||(33530722-33530754)
[»] chr3 (7 HSPs)
chr3 (236-269)||(2754715-2754748)
chr3 (236-269)||(3574561-3574594)
chr3 (236-269)||(11347266-11347299)
chr3 (236-269)||(47402630-47402663)
chr3 (228-269)||(48160895-48160936)
chr3 (236-268)||(33113791-33113823)
chr3 (237-269)||(42297352-42297384)
[»] chr1 (2 HSPs)
chr1 (236-269)||(18404440-18404473)
chr1 (236-268)||(25463674-25463706)


Alignment Details
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 3205945 - 3205831
Alignment:
Q  123 tgttcctttttcttttgcaagtgatttaacttgctgccctcctagatctggttatttggttcaattaaattattaatttgttgtgatagtgtttttgtgt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3205945 tgttcctttttcttttgcaagtgatttaacttgctgccctcctagatctggttatttggttcaattaaattattaatttgttgtgatagtgtttttgtgt 3205846  T
Q  223 taagctttcaaacaa 237  Q
    |||||||||||||||    
T  3205845 taagctttcaaacaa 3205831  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 9293643 - 9293610
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  9293643 aagagcaatgctatatatcaagaaagattttatc 9293610  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 35160756 - 35160788
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  35160756 agagcaatgctatatatcaagaaagattttatc 35160788  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 28675145 - 28675179
Alignment:
Q  235 caagagcaattctatatatcaagaaagattttatc 269  Q
    |||||||||| ||||||||||||||||||||||||    
T  28675145 caagagcaatgctatatatcaagaaagattttatc 28675179  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 6127273 - 6127306
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  6127273 aagagcaatgctatatatcaagaaagattttatc 6127306  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 18365640 - 18365607
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  18365640 aagagcaatgctatatatcaagaaagattttatc 18365607  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 18370904 - 18370871
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  18370904 aagagcaatgctatatatcaagaaagattttatc 18370871  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 23291151 - 23291118
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  23291151 aagagcaatgctatatatcaagaaagattttatc 23291118  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 33695393 - 33695361
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  33695393 agagcaatgctatatatcaagaaagattttatc 33695361  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 33696695 - 33696727
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  33696695 agagcaatgctatatatcaagaaagattttatc 33696727  T

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Target: scaffold0096 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 41009 - 41042
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  41009 aagagcaatgctatatatcaagaaagattttatc 41042  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 1646032 - 1645999
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  1646032 aagagcaatgctatatatcaagaaagattttatc 1645999  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 15187558 - 15187591
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  15187558 aagagcaatgctatatatcaagaaagattttatc 15187591  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 32064743 - 32064776
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  32064743 aagagcaatgctatatatcaagaaagattttatc 32064776  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 15329271 - 15329304
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  15329271 aagagcaatgctatatatcaagaaagattttatc 15329304  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 45637710 - 45637743
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  45637710 aagagcaatgctatatatcaagaaagattttatc 45637743  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 15577916 - 15577884
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  15577916 agagcaatgctatatatcaagaaagattttatc 15577884  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 2477634 - 2477667
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  2477634 aagagcaatgctatatatcaagaaagattttatc 2477667  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 6043578 - 6043545
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  6043578 aagagcaatgctatatatcaagaaagattttatc 6043545  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 3362777 - 3362809
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  3362777 agagcaatgctatatatcaagaaagattttatc 3362809  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 38899792 - 38899760
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  38899792 agagcaatgctatatatcaagaaagattttatc 38899760  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 10442856 - 10442823
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  10442856 aagagcaatgctatatatcaagaaagattttatc 10442823  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 4751445 - 4751477
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  4751445 agagcaatgctatatatcaagaaagattttatc 4751477  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 31078885 - 31078853
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  31078885 agagcaatgctatatatcaagaaagattttatc 31078853  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 33530754 - 33530722
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  33530754 agagcaatgctatatatcaagaaagattttatc 33530722  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 2754715 - 2754748
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  2754715 aagagcaatgctatatatcaagaaagattttatc 2754748  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 3574594 - 3574561
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  3574594 aagagcaatgctatatatcaagaaagattttatc 3574561  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 11347266 - 11347299
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  11347266 aagagcaatgctatatatcaagaaagattttatc 11347299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 47402663 - 47402630
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  47402663 aagagcaatgctatatatcaagaaagattttatc 47402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 48160895 - 48160936
Alignment:
Q  228 tttcaaacaagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||| | ||||||| ||||||||||||||||||||||||    
T  48160895 tttcaaaaatgagcaatgctatatatcaagaaagattttatc 48160936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 33113791 - 33113823
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttat 268  Q
    ||||||||| |||||||||||||||||||||||    
T  33113791 aagagcaatgctatatatcaagaaagattttat 33113823  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 42297352 - 42297384
Alignment:
Q  237 agagcaattctatatatcaagaaagattttatc 269  Q
    |||||||| ||||||||||||||||||||||||    
T  42297352 agagcaatgctatatatcaagaaagattttatc 42297384  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 18404440 - 18404473
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttatc 269  Q
    ||||||||| ||||||||||||||||||||||||    
T  18404440 aagagcaatgctatatatcaagaaagattttatc 18404473  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 25463674 - 25463706
Alignment:
Q  236 aagagcaattctatatatcaagaaagattttat 268  Q
    ||||||||| |||||||||||||||||||||||    
T  25463674 aagagcaatgctatatatcaagaaagattttat 25463706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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