View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9007_low_3 (Length: 627)
Name: NF9007_low_3
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9007_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 3e-71; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 377 - 563
Target Start/End: Complemental strand, 5569872 - 5569695
Alignment:
| Q |
377 |
atttggagactcttttt-cagataatggaaacaacaatgatcttccaaccactgcaaaagctaattacaacccgtatggcgtcgactttcaagaaggccc |
475 |
Q |
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| T |
5569872 |
atttggagactcttttttcagataatggaaacaacaacgatcttccaaccactgcaaaagctaattacaacccgtatggcgtc----------aaggccc |
5569783 |
T |
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| Q |
476 |
aaccggaagagttaccaatggggcaacggaaattgacataattggtaacaattataggcaccattacaagctcatttgttaattattg |
563 |
Q |
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| T |
5569782 |
aaccggaagatttaccaatggggcaacggaaattgacataattggtaacaattataggcaccattacaagctcatttgttaattattg |
5569695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 260 - 496
Target Start/End: Complemental strand, 5616174 - 5615932
Alignment:
| Q |
260 |
tagagaaatggcttgtgatattaaaacatggttagttttgcatctttttctattggctgcatgctacatgcaacattatgtccaaggacactca------ |
353 |
Q |
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| T |
5616174 |
tagagaaatggcctgtgagactaaaatatggttagttttgcatcttcttctcttggttgcatgctacatgcaacattatgtccacggacaaacacaaaca |
5616075 |
T |
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| Q |
354 |
tctgaagtgccttgcatttttatatttggagactctttttcagataatggaaacaacaatgatcttccaaccactgcaaaagctaattacaacccgtatg |
453 |
Q |
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| T |
5616074 |
tctcaagtgccttgcatatttatatttggagactccttgtctgacaatggaaacaacaacaatcttcgaaccaatgcaaaatctaattacaatccgtacg |
5615975 |
T |
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| Q |
454 |
gcgtcgactttcaagaaggcccaaccggaagagttaccaatgg |
496 |
Q |
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| T |
5615974 |
gcgtcgactttcaagaaggtccgacgggaagatttaccaatgg |
5615932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 358 - 465
Target Start/End: Complemental strand, 5587124 - 5587017
Alignment:
| Q |
358 |
aagtgccttgcatttttatatttggagactctttttcagataatggaaacaacaatgatcttccaaccactgcaaaagctaattacaacccgtatggcgt |
457 |
Q |
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| T |
5587124 |
aagtgccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaatccctatggaat |
5587025 |
T |
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| Q |
458 |
cgactttc |
465 |
Q |
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| T |
5587024 |
cgactttc |
5587017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 353 - 454
Target Start/End: Complemental strand, 5573598 - 5573497
Alignment:
| Q |
353 |
atctgaagtgccttgcatttttatatttggagactctttttcagataatggaaacaacaatgatcttccaaccactgcaaaagctaattacaacccgtat |
452 |
Q |
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| T |
5573598 |
atctcaagtgccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataaccttcctacctctgcaaaatctaattacaaaccttat |
5573499 |
T |
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| Q |
453 |
gg |
454 |
Q |
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|| |
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| T |
5573498 |
gg |
5573497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 465
Target Start/End: Complemental strand, 7017709 - 7017602
Alignment:
| Q |
358 |
aagtgccttgcatttttatatttggagactctttttcagataatggaaacaacaatgatcttccaaccactgcaaaagctaattacaacccgtatggcgt |
457 |
Q |
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| T |
7017709 |
aagtgccttgtctttttgtttttggtgactctttatctgacagtggaaacaacaatgatcttgttacaactgcaaaagttaattacaaaccatatggcat |
7017610 |
T |
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| Q |
458 |
cgactttc |
465 |
Q |
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||| |||| |
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| T |
7017609 |
cgattttc |
7017602 |
T |
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