View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9007_low_5 (Length: 515)
Name: NF9007_low_5
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9007_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 264 - 500
Target Start/End: Complemental strand, 6089995 - 6089759
Alignment:
| Q |
264 |
aactcttaaccctttgattcttgggtaaaagggtcctgataatctagagtaccaaatttacgttgtattgttttaactgttaaataatttaacatcacaa |
363 |
Q |
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| T |
6089995 |
aactcttaacccttttattcttgggtaaaagggtcctggtaatctagagtaccaaatttacgttgtattgtttcaactgttaaataatttaacatcacaa |
6089896 |
T |
|
| Q |
364 |
aaacaatggaacaggtgtgaacaggagcggttgtaatagaagtgttttcggaaatgaggttaatcacttaaaacaattggtttttgatctagaatgtgag |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6089895 |
aaacaatggaacaggtgtgaacaggagcggttgtaatagaagtgtttttggaaatgaggttaatcacttaaaacaattggtttttgatctagaatgtgag |
6089796 |
T |
|
| Q |
464 |
gaaaatgatattacaaaacaacttcaacgattaaagt |
500 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
6089795 |
gaaaattatattacaaaacaacttcaacgattaaagt |
6089759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 6090235 - 6089995
Alignment:
| Q |
10 |
cagaacctgtgaatagatcaattcattcaatacaagttcaaggtaaataaaaagcagtttttaccagtactcctttccagattagatgtgttaattgatt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6090235 |
cagaagctgtgaatagatcaattcattcaatacaagttcaaggtaaatgaaaagcagtttttaccggtactcctttccagattagatgtgttaattgatt |
6090136 |
T |
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| Q |
110 |
atgatttatctc--------------------ttgtcacgatttaattattgaaataatcaactttgagatgataaaattatcaaaaaaggaaaacagtt |
189 |
Q |
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| T |
6090135 |
atgatttatctcttgttacttgttttactaaattgtcacgatttaattattgaaataatcaactttgagatgataaaattatcaaaaaaggaaaacagtt |
6090036 |
T |
|
| Q |
190 |
ttctttacac-----atatacaagattatgttttaaagtta |
225 |
Q |
| |
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|||||||||| ||||| | |||||||||||||||||| |
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| T |
6090035 |
ttctttacacatgcaatataaacgattatgttttaaagtta |
6089995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 353 - 490
Target Start/End: Complemental strand, 6107077 - 6106940
Alignment:
| Q |
353 |
taacatcacaaaaacaatggaacaggtgtgaacaggagcggttgtaatagaagtgttttcggaaa-tgaggttaatcacttaaaacaattggtttttgat |
451 |
Q |
| |
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|||||| ||||| | |||||| |||||||| || | |||||| |||| |||||| ||||| |||| |||| ||||||| ||||||||||||||| ||||| |
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| T |
6107077 |
taacatgacaaacataatggatcaggtgtgcacggtagcggtggtaacagaagt-ttttctgaaagtgagattaatcaattaaaacaattggttattgat |
6106979 |
T |
|
| Q |
452 |
ctagaatgtgaggaaaatgatattacaaaacaacttcaa |
490 |
Q |
| |
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| T |
6106978 |
ttaaaatgtgaggaaaaagatattgcaaaacaacttcaa |
6106940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 366 - 486
Target Start/End: Complemental strand, 6181449 - 6181329
Alignment:
| Q |
366 |
acaatggaacaggtgtgaacaggagcggttgtaatagaagtgttttcggaaatgaggttaatcacttaaaacaattggtttttgatctagaatgtgagga |
465 |
Q |
| |
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|||| ||| ||||||||||||| ||||||||||| | |||||||| | | |||| ||||||| ||||||||||||||| ||||| | |||||||| | |
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| T |
6181449 |
acaacggagcaggtgtgaacagtagcggttgtaacataagtgtttatgagagtgagattaatcaattaaaacaattggttattgatttggaatgtgataa |
6181350 |
T |
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| Q |
466 |
aaatgatattacaaaacaact |
486 |
Q |
| |
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||| |||||| |||||||||| |
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| T |
6181349 |
aaacgatattgcaaaacaact |
6181329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 353 - 485
Target Start/End: Complemental strand, 6209030 - 6208898
Alignment:
| Q |
353 |
taacatcacaaaaacaatggaacaggtgtgaacaggagcggttgtaatagaagtgttttcggaaatgaggttaatcacttaaaacaattggtttttgatc |
452 |
Q |
| |
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|||||| ||||| |||||||| ||||||||||| | |||| | |||| |||||||||| | || |||| || |||| |||||||| ||||| ||||| |
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| T |
6209030 |
taacatgacaaacacaatggagcaggtgtgaacggtagcgatggtaacagaagtgtttccaaaagtgagattgatcaaataaaacaaatggttcttgatt |
6208931 |
T |
|
| Q |
453 |
tagaatgtgaggaaaatgatattacaaaacaac |
485 |
Q |
| |
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||||||| |||||||||| |||| |||| |||| |
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|
| T |
6208930 |
tagaatgcgaggaaaatgttattgcaaagcaac |
6208898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 353 - 486
Target Start/End: Complemental strand, 6248283 - 6248150
Alignment:
| Q |
353 |
taacatcacaaaaacaatggaacaggtgtgaacaggagcggttgtaatagaagtgttttcggaaatgaggttaatcacttaaaacaattggtttttgatc |
452 |
Q |
| |
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|||||| ||||| |||| || ||||| ||||||| |||||||| || | |||||||| | | |||| ||||||| ||||||||||||||| ||||| |
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| T |
6248283 |
taacatgacaaacacaactgagcaggtatgaacagtagcggttgcaacataagtgtttatgagagtgagattaatcaattaaaacaattggttattgatt |
6248184 |
T |
|
| Q |
453 |
tagaatgtgaggaaaatgatattacaaaacaact |
486 |
Q |
| |
|
| ||| |||| ||||| |||||| |||||||||| |
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| T |
6248183 |
tggaacgtgatgaaaacgatattgcaaaacaact |
6248150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 426 - 491
Target Start/End: Complemental strand, 6095215 - 6095150
Alignment:
| Q |
426 |
atcacttaaaacaattggtttttgatctagaatgtgaggaaaatgatattacaaaacaacttcaac |
491 |
Q |
| |
|
|||||||||||||| | ||| || ||||||||||||||||| ||||| ||||| ||||||| |||| |
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| T |
6095215 |
atcacttaaaacaactagttcttaatctagaatgtgaggaacatgatgttacagaacaactgcaac |
6095150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 486
Target Start/End: Complemental strand, 6101658 - 6101602
Alignment:
| Q |
430 |
cttaaaacaattggtttttgatctagaatgtgaggaaaatgatattacaaaacaact |
486 |
Q |
| |
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||||||| || |||||||||||||||||| |||| ||||| |||||| ||||||||| |
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| T |
6101658 |
cttaaaagaagtggtttttgatctagaatatgagaaaaattatattataaaacaact |
6101602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 366 - 462
Target Start/End: Complemental strand, 6213772 - 6213676
Alignment:
| Q |
366 |
acaatggaacaggtgtgaacaggagcggttgtaatagaagtgttttcggaaatgaggttaatcacttaaaacaattggtttttgatctagaatgtga |
462 |
Q |
| |
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|||||||| ||||||||||| |||||| |||| |||| ||||| | || |||| |||||| ||||| ||||||||| ||||| |||||||||| |
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| T |
6213772 |
acaatggagcaggtgtgaacgttagcggtggtaacagaaatgtttatgaaagtgagaataatcaattaaaccaattggttattgatttagaatgtga |
6213676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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