View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9007_low_6 (Length: 491)

Name: NF9007_low_6
Description: NF9007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9007_low_6
NF9007_low_6
[»] chr6 (4 HSPs)
chr6 (69-467)||(22542325-22542724)
chr6 (77-305)||(24357727-24357955)
chr6 (307-363)||(24357977-24358033)
chr6 (428-472)||(24358067-24358111)
[»] chr7 (10 HSPs)
chr7 (74-473)||(33290732-33291130)
chr7 (74-472)||(6009984-6010400)
chr7 (75-349)||(19313139-19313416)
chr7 (74-298)||(11620928-11621152)
chr7 (69-178)||(34544491-34544601)
chr7 (204-312)||(11230919-11231027)
chr7 (181-277)||(17492253-17492348)
chr7 (181-277)||(17560866-17560961)
chr7 (384-445)||(20911198-20911259)
chr7 (411-472)||(34544687-34544748)
[»] scaffold0427 (1 HSPs)
scaffold0427 (69-472)||(9931-10353)
[»] chr5 (6 HSPs)
chr5 (295-433)||(19079306-19079444)
chr5 (316-433)||(19079062-19079179)
chr5 (318-418)||(22951207-22951307)
chr5 (252-300)||(19079459-19079507)
chr5 (181-231)||(22806946-22806996)
chr5 (428-472)||(19074485-19074529)
[»] chr2 (1 HSPs)
chr2 (110-305)||(28578902-28579097)
[»] chr3 (4 HSPs)
chr3 (180-306)||(16018063-16018189)
chr3 (317-462)||(16017887-16018031)
chr3 (317-448)||(14263120-14263251)
chr3 (254-314)||(19801384-19801444)
[»] chr4 (5 HSPs)
chr4 (181-310)||(19033157-19033285)
chr4 (69-226)||(20882054-20882211)
chr4 (316-399)||(20882308-20882390)
chr4 (254-314)||(16672469-16672529)
chr4 (238-314)||(12459649-12459725)
[»] chr1 (2 HSPs)
chr1 (295-399)||(25235039-25235144)
chr1 (239-312)||(3256259-3256332)
[»] chr8 (3 HSPs)
chr8 (273-338)||(15662021-15662086)
chr8 (401-472)||(15549989-15550060)
chr8 (398-472)||(15661896-15661970)
[»] scaffold0111 (1 HSPs)
scaffold0111 (317-382)||(23806-23871)


Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 69 - 467
Target Start/End: Original strand, 22542325 - 22542724
Alignment:
Q  69 tcattaaacatcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgt 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  22542325 tcattaaacatcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtccgtctatttttcttccaagttcgt 22542424  T
Q  169 ctatttttcaccttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaag 268  Q
    ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22542425 ctatttttcatgttcaaacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaacatattaccatgagtataaagtcatttgtaag 22542524  T
Q  269 ctaacaagttatatttcatcatttcaccaaagttcgtttattttcatatttttaccaaaaaccaagttacatgctcttatag-ttctttatcaaacctac 367  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  22542525 ctaacaagtcatatttcatcatttcaccaaagttcgtctattttcatatttttaccaaaaatcaagttacatgctcttatagtttctttatcaaacctac 22542624  T
Q  368 atgcttcatctaagttcatcattacagtagacaagtcataacatcatcattccacttaagaaaaatcatcattcaattattacaagttcatgttcatttt 467  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  22542625 atgcttcatctaagttcatcattacagtagacaagtcataacatcatcattccacttaagaaaaatcatcattcgattattacaagttcatgttcatttt 22542724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 77 - 305
Target Start/End: Original strand, 24357727 - 24357955
Alignment:
Q  77 catcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgtctattttt 176  Q
    |||||||||| || |||| | ||||||||||||||| |||||| |||||| ||  |||| | |||||  |||||||||||||  ||||| ||||||||||    
T  24357727 catcatctaatcagtagccagcaatcatttacaagtaaacttagcataaaccaatatttattaaagtccgtctatttttctttaaagttagtctattttt 24357826  T
Q  177 caccttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaacaag 276  Q
    ||  |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| | | || |||||||||||||||||||||||||    
T  24357827 cattttcacataattcatcatatctcatgcattttaatcatcaattcaatcattatccaacatattatcctaagcataaagtcatttgtaagctaacaag 24357926  T
Q  277 ttatatttcatcatttcaccaaagttcgt 305  Q
    | ||||||||||||||||||||| |||||    
T  24357927 tcatatttcatcatttcaccaaatttcgt 24357955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 24357977 - 24358033
Alignment:
Q  307 tattttcatatttttaccaaaaaccaagttacatgctcttatagttctttatcaaac 363  Q
    |||||||| ||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  24357977 tattttcacatttttatcaaaaattaagttacatgctcttatagttctttatcaaac 24358033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 472
Target Start/End: Original strand, 24358067 - 24358111
Alignment:
Q  428 aaaaatcatcattcaattattacaagttcatgttcatttttcatt 472  Q
    |||||||||||||| |||||| ||| ||||||||||||| |||||    
T  24358067 aaaaatcatcattcgattatttcaaattcatgttcatttctcatt 24358111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 74 - 473
Target Start/End: Complemental strand, 33291130 - 33290732
Alignment:
Q  74 aaacatcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgtctatt 173  Q
    ||||||||| |||||||||| |||||||| |||||||||||||||  | | |  |||||||||||||||   |||||||||||| | |||||||||||||    
T  33291130 aaacatcatataaacaatagataacaatcttttacaagttaacttggcttgagccatcatttgtcaaaggccgtctatttttctccaaagttcgtctatt 33291031  T
Q  174 tttcaccttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaac 273  Q
    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||||||| || ||||||||    
T  33291030 tttcat-ttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaacatattatcatgagcacaaagtcatctgcaagctaac 33290932  T
Q  274 aagttatatttcatcatttcaccaaagttcgtttattttcatatttttaccaaaaaccaagttacatgctcttatagttctttatcaaacctacatgctt 373  Q
    || | | | |||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  33290931 aaatcacaattcaacatttcaccaaagttcgtctattttcacatttttaccaaaaaccaagttacatgctcttatagttctttatcaaatctacatgttt 33290832  T
Q  374 catctaagttcatcattacagtagacaagtcataacatcatcattccacttaagaaaaatcatcattcaattattacaagttcatgttcatttttcattt 473  Q
    |||| ||||||||| |||||||||||||||| ||||||||||||| || ||||||||||   |||||| |||||| |||||||||| |||||| ||||||    
T  33290831 catcgaagttcatcgttacagtagacaagtcgtaacatcatcatttcatttaagaaaaaatgtcattcgattatttcaagttcatgctcatttctcattt 33290732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 74 - 472
Target Start/End: Complemental strand, 6010400 - 6009984
Alignment:
Q  74 aaacatcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgtctatt 173  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||| || ||| ||||||||||||||||   ||||||||||||  |||||||||||||    
T  6010400 aaacatcatctaaacagtagccaacaatcaattacaagttaacttagcacaaaccatcatttgtcaaagtccatctatttttctttaaagttcgtctatt 6010301  T
Q  174 tttcaccttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaac 273  Q
    |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||  |||||| |||| |||||||| ||||||||    
T  6010300 tttcattttcacacaattcatcatatctcgtgcatattaatcatcaattcaatcataatccaacatattgtcatgagcataacgtcatttgcaagctaac 6010201  T
Q  274 aagttatatttcatcatttca--------------------ccaaagttcgtttattttcatatttttaccaaaaaccaagttacatgctcttatagttc 353  Q
    |||| ||||||||||||||||                    ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||    
T  6010200 aagtcatatttcatcatttcatcaaagtttgtctataatttccaaagttcatctattttcatatttttagcaaaaaccaagttacatgctcttatagttc 6010101  T
Q  354 tttatcaaacctacatgcttcatctaagttcatcattacagtagacaagtcataacatcatcattccacttaagaaaaatcatcattcaattattacaag 453  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||  ||||||| ||| |||||||| ||||| ||||||  |||||| ||||    
T  6010100 tttatcaaacctacatgcttcatctaagttca-cattactgtagacaagtcactacatcattatttcacttaag-aaaattatcatttgattatttcaag 6010003  T
Q  454 ttcatgttcatttttcatt 472  Q
    ||||||||||||| |||||    
T  6010002 ttcatgttcatttctcatt 6009984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 75 - 349
Target Start/End: Original strand, 19313139 - 19313416
Alignment:
Q  75 aacatcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgtctattt 174  Q
    |||||||| |||||| |||||||||||| ||||||| |||| |||  ||||| ||||||||||||||||   ||||||||||||| ||||||||||||||    
T  19313139 aacatcatataaacagtagctaacaatcttttacaacttaatttagaataaaccatcatttgtcaaagtccatctatttttcttcaaagttcgtctattt 19313238  T
Q  175 ttcac--cttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaa 272  Q
    ||     ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||| ||| || ||||||||||||  |||||||    
T  19313239 tttttttcttcacacaattcatcatatctcatgcatcttaatcctcaattcaatcataatccaacatattatcataagcataaagtcatttacaagctaa 19313338  T
Q  273 caagttatatttcatcatttcaccaaagttcgtttattttcatattttt-accaaaaaccaagttacatgctcttata 349  Q
    ||||| |||||||| |||||||||||||||||| |||||||| |||||| | |||||||||||||| ||||| |||||    
T  19313339 caagtcatatttcaacatttcaccaaagttcgtctattttcacatttttcatcaaaaaccaagttatatgcttttata 19313416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 74 - 298
Target Start/End: Complemental strand, 11621152 - 11620928
Alignment:
Q  74 aaacatcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgtctatt 173  Q
    ||||||||||||||| ||||  ||||||| |||||||||||||||| || ||| |||||||||||||||| | | ||||||||| | ||||| |||||||    
T  11621152 aaacatcatctaaacgatagtcaacaatcttttacaagttaacttagcacaaaccatcatttgtcaaagtctatttatttttctccaaagttggtctatt 11621053  T
Q  174 tttcaccttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaac 273  Q
    |||||  ||||||||||||| |||| |||| |||||||||||||||||||||||||||| ||| |||||| ||| || ||||| || ||||||| |||||    
T  11621052 tttcattttcacacaattcaacatacctcacgcatattaatcatcaattcaatcataattcaacatattatcataagcataaaatcgtttgtaatctaac 11620953  T
Q  274 aagttatatttcatcatttcaccaa 298  Q
    |||| ||||||||||||||||||||    
T  11620952 aagtcatatttcatcatttcaccaa 11620928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 178
Target Start/End: Original strand, 34544491 - 34544601
Alignment:
Q  69 tcattaaacatcatctaaacaatagctaacaatcatttacaa-gttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcg 167  Q
    |||| ||||||||| |||  |||||| |||||||||||| || ||||||||| || ||| |||||||| |||||||  |||||||||||||| ||||| |    
T  34544491 tcatcaaacatcatataagaaatagccaacaatcatttataaagttaacttagcacaaaccatcatttatcaaagtccgtctatttttcttcaaagtttg 34544590  T
Q  168 tctatttttca 178  Q
    || ||||||||    
T  34544591 tccatttttca 34544601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 312
Target Start/End: Complemental strand, 11231027 - 11230919
Alignment:
Q  204 tgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaacaagttatatttcatcatttcaccaaagttc 303  Q
    ||||||| |||||  |||| |||||| || ||  |||||| |||||| ||||| ||||||| |||||| || |  ||| |||||||||||||||||||||    
T  11231027 tgcatatcaatcactaattaaatcattattcatcatattatcatgagcataaaatcatttgcaagctatcatgccataattcatcatttcaccaaagttc 11230928  T
Q  304 gtttatttt 312  Q
    || ||||||    
T  11230927 gtatatttt 11230919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 277
Target Start/End: Complemental strand, 17492348 - 17492253
Alignment:
Q  181 ttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaacaagt 277  Q
    ||||||||||||| ||||||| || |||||||| ||| ||||||||||||||  |  |||||| |||||  ||||| | ||||| ||||||||||||    
T  17492348 ttcacacaattcaacatatcttatacatattaaacattaattcaatcataatttatcatattatcatgaacataaa-taatttggaagctaacaagt 17492253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 17560866 - 17560961
Alignment:
Q  181 ttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaacaagt 277  Q
    ||||||||||||| ||||||| || |||||||| ||| ||||||||||||||  |  |||||| |||||  ||||| | ||||| ||||||||||||    
T  17560866 ttcacacaattcaacatatcttatacatattaaacattaattcaatcataatttatcatattatcatgaacataaa-taatttggaagctaacaagt 17560961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 445
Target Start/End: Complemental strand, 20911259 - 20911198
Alignment:
Q  384 catcattacagtagacaagtcataacatcatcattccacttaagaaaaatcatcattcaatt 445  Q
    |||||||||| || |||||||| ||||||||||||   |||||||||||||||  |||||||    
T  20911259 catcattacaataaacaagtcaaaacatcatcattgttcttaagaaaaatcatttttcaatt 20911198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 472
Target Start/End: Original strand, 34544687 - 34544748
Alignment:
Q  411 tcatcattccacttaagaaaaatcatcattcaattattacaagttcatgttcatttttcatt 472  Q
    |||||||| || | ||||||||| || |||| |||||| ||||||||||||||||| |||||    
T  34544687 tcatcatttcattcaagaaaaattattattcgattatttcaagttcatgttcatttctcatt 34544748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 69 - 472
Target Start/End: Original strand, 9931 - 10353
Alignment:
Q  69 tcattaaacatcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgt 168  Q
    |||||||| ||||  |||||||||| |||| |||||||||||||||||  | |||||||||||||||  ||||||  |||||||||||| | ||||||||    
T  9931 tcattaaatatcacttaaacaataggtaaccatcatttacaagttaacc-agcataaatcatcatttaacaaagtccgtctatttttctccaaagttcgt 10029  T
Q  169 ctatttttcaccttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaag 268  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||| |||||| | ||||| | ||  |||    
T  10030 ctatttttcactttcacacaattcatcatatctcatgcatattagtcatcaaatcaatcataatccaacatattatcatgagcaaaaagttaatttcaag 10129  T
Q  269 ctaacaagttatatttcatcatttcaccaaagtt--------------------cgtttattttcatatttttaccaaaaaccaagttacatgctcttat 348  Q
    ||||||||| |||||||| |||||||||||||||                    ||| |||||| | ||||||    ||||||||||||||||| |||||    
T  10130 ctaacaagtcatatttcaacatttcaccaaagttcgtctataaattccaaagttcgtctattttgacatttttcatcaaaaccaagttacatgcccttat 10229  T
Q  349 agttctttatcaaacctacatgcttcatctaagttcatcattacagtagacaagtcataacatcatcattccacttaagaaaaatcatcattcaattatt 448  Q
    ||||||| ||||| ||||||||||||| |||||||||||||||||| | || | |||||| ||||||||| |||||||||||||| ||||||| | ||||    
T  10230 agttcttcatcaatcctacatgcttcacctaagttcatcattacagaaaaccaatcataaaatcatcatttcacttaagaaaaattatcattcgaatatt 10329  T
Q  449 acaagttcatgttcatttttcatt 472  Q
     ||||||||||||||||| |||||    
T  10330 tcaagttcatgttcatttctcatt 10353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 295 - 433
Target Start/End: Complemental strand, 19079444 - 19079306
Alignment:
Q  295 ccaaagttcgtttattttcatatttttaccaaaaaccaagttacatgctcttatagttctttatcaaacctacatgcttcatctaagttcatcattacag 394  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  19079444 ccaaagttcgtctattttcacatttttaccgaaaaccaagttacatgttcttatagttcgttatcaaacctacatgcttcatataagttcatcattacag 19079345  T
Q  395 tagacaagtcataacatcatcattccacttaagaaaaat 433  Q
    || ||||||||||||||||||||| || |||||||||||    
T  19079344 tatacaagtcataacatcatcatttcatttaagaaaaat 19079306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 316 - 433
Target Start/End: Complemental strand, 19079179 - 19079062
Alignment:
Q  316 atttttaccaaaaaccaagttacatgctcttatagttctttatcaaacctacatgcttcatctaagttcatcattacagtagacaagtcataacatcatc 415  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  19079179 atttttaccaaaaaccaagttacatgttcttatagttcgttatcaaacctacatgcttcatataagttcatcattacagtatacaagtcataacatcatc 19079080  T
Q  416 attccacttaagaaaaat 433  Q
    ||  || |||||||||||    
T  19079079 atctcatttaagaaaaat 19079062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 418
Target Start/End: Original strand, 22951207 - 22951307
Alignment:
Q  318 ttttaccaaaaaccaagttacatgctcttatagttctttatcaaacctacatgcttcatctaagttcatcattacagtagacaagtcataacatcatcat 417  Q
    |||| ||||||| |||||| ||| |||| |||||  | |||||| |||||||| ||| |||||| |||| ||||||||| |||||||| |||||||||||    
T  22951207 ttttgccaaaaatcaagtttcatactctcatagtcatatatcaaccctacatgtttcctctaagctcattattacagtaaacaagtcaaaacatcatcat 22951306  T
Q  418 t 418  Q
    |    
T  22951307 t 22951307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 19079507 - 19079459
Alignment:
Q  252 ataaagtcatttgtaagctaacaagttatatttcatcatttcaccaaag 300  Q
    ||||| ||||||  |||||||||||| ||||||||||||||||||||||    
T  19079507 ataaaatcattttcaagctaacaagtcatatttcatcatttcaccaaag 19079459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 22806946 - 22806996
Alignment:
Q  181 ttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataa 231  Q
    ||||||||||||||||||| ||| |||||| |||  |||||||||||||||    
T  22806946 ttcacacaattcatcatatttcaagcatataaatactcaattcaatcataa 22806996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 428 - 472
Target Start/End: Complemental strand, 19074529 - 19074485
Alignment:
Q  428 aaaaatcatcattcaattattacaagttcatgttcatttttcatt 472  Q
    |||||||||||||  |||||| ||||||||||||||||| |||||    
T  19074529 aaaaatcatcatttgattatttcaagttcatgttcatttctcatt 19074485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 110 - 305
Target Start/End: Complemental strand, 28579097 - 28578902
Alignment:
Q  110 agttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgtctatttttcaccttcacacaattcatcatatctcatgcata 209  Q
    |||||||||| |||||| |||||||||||||||| |||||||||| |||| |||||||| ||||||||| ||||| |  ||| |||||||||||  ||||    
T  28579097 agttaacttagcataaaccatcatttgtcaaagtttgtctattttccttcaaagttcgtttatttttcatcttcaaatcatttatcatatctcactcata 28578998  T
Q  210 ttaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaacaagttatatttcatcatttcaccaaagttcgt 305  Q
    |||||| |||| ||||||||| ||||| |||||| |||||| ||||||| | ||| |||||||||||| ||||||||||||||| | |||||||||    
T  28578997 ttaatcgtcaactcaatcatattccaacatattatcatgagcataaagttagttgcaagctaacaagtcatatttcatcatttcgcaaaagttcgt 28578902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 180 - 306
Target Start/End: Complemental strand, 16018189 - 16018063
Alignment:
Q  180 cttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaacaagtta 279  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||| ||||||||||||| ||| || ||||| |    
T  16018189 cttcacacaaaccatcatatctcatgcatattaatcctcaattcaatcataatctaacatattatcatgagcataaagtcatttgcaagttaccaagtca 16018090  T
Q  280 tatttcatcatttcaccaaagttcgtt 306  Q
    ||||| | |||||||||||||||||||    
T  16018089 tatttaaacatttcaccaaagttcgtt 16018063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 462
Target Start/End: Complemental strand, 16018031 - 16017887
Alignment:
Q  317 tttttaccaaaaaccaagttacatgctcttatagttctttatcaaacctacatgcttcatctaagttcatcattacagtagacaagtcataacatcatca 416  Q
    |||||||||||||| |||||||||||| ||||||||||||||||| || |||||||| |||||||| ||| ||  ||  |   || ||||||||||||||    
T  16018031 tttttaccaaaaactaagttacatgcttttatagttctttatcaatcccacatgctttatctaagtccattatctcataaagaaattcataacatcatca 16017932  T
Q  417 ttccacttaagaaaaatcatcattcaattattacaagttcatgttc 462  Q
    || ||||||| ||||||||| ||||  ||||| ||| |||| ||||    
T  16017931 tttcacttaa-aaaaatcattattcgtttattccaatttcaagttc 16017887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 448
Target Start/End: Original strand, 14263120 - 14263251
Alignment:
Q  317 tttttaccaaaaaccaagttacatgctcttatagttctttatcaaacctacatgcttcatctaagttcatcattacagtagacaagtcataacatcatca 416  Q
    |||||| |||| | ||||||||||||| ||||||| ||| |||||||||||||  ||||||||||| ||| || ||| ||   || ||||||||||||||    
T  14263120 tttttatcaaatatcaagttacatgcttttatagtccttcatcaaacctacatatttcatctaagtccattatcacaataagaaattcataacatcatca 14263219  T
Q  417 ttccacttaagaaaaatcatcattcaattatt 448  Q
    || ||||| |||||| |||| |||| ||||||    
T  14263220 tttcacttcagaaaagtcattattcgattatt 14263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 19801384 - 19801444
Alignment:
Q  254 aaagtcatttgtaagctaacaagttatatttcatcatttcaccaaagttcgtttattttca 314  Q
    ||||||||||||||| |||||| | ||| |||| |||||  ||||||||||| ||||||||    
T  19801384 aaagtcatttgtaagttaacaaatcataattcaacattttgccaaagttcgtctattttca 19801444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 19033285 - 19033157
Alignment:
Q  181 ttcacacaattcatcatatctcatgcatattaatcatcaattcaatcataatccaatatattaccatgagtataaagtcatttgtaagctaacaagttat 280  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| | | ||||||||  ||||| |||||| || |||||||||| |||||||||||| ||    
T  19033285 ttcacacaattcatcatttctcatgcatattaatcctcaattccaccctaatccaacgtattatcatgagcat-aagtcatttgcaagctaacaagtcat 19033187  T
Q  281 atttcatcatttcaccaaagttcgtttatt 310  Q
    |||||| ||||||| |||||||||| ||||    
T  19033186 atttcaacatttcatcaaagttcgtctatt 19033157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 20882054 - 20882211
Alignment:
Q  69 tcattaaacatcatctaaacaatagctaacaatcatttacaagttaacttatcataaatcatcatttgtcaaagtatgtctatttttcttccaagttcgt 168  Q
    |||| ||||||||||||| || |||| |||||||||||| | ||||||||| || ||  |||||||||| ||||| ||||||||||||| |  ||||| |    
T  20882054 tcataaaacatcatctaagcagtagccaacaatcatttatatgttaacttagcacaagccatcatttgttaaagtctgtctatttttctccatagttcat 20882153  T
Q  169 ctatttttcaccttcacacaattcatcatatctcatgcatattaatcatcaattcaat 226  Q
    || ||||| |  |||||| ||||| |||||||||||||||||| ||||||| ||||||    
T  20882154 ctttttttaattttcacataattcgtcatatctcatgcatatttatcatcagttcaat 20882211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 399
Target Start/End: Original strand, 20882308 - 20882390
Alignment:
Q  316 atttttaccaaaaaccaagttacatgctcttatagttctttatcaaacctacatgcttcatctaagttcatcattacagtagac 399  Q
    ||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||| || |||| ||| || |||||||    
T  20882308 atttttaccaaaa-ccaagttacatgctattatacttctttatcaatcctacatgtttcatttatgttcgtcactatagtagac 20882390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 314
Target Start/End: Complemental strand, 16672529 - 16672469
Alignment:
Q  254 aaagtcatttgtaagctaacaagttatatttcatcatttcaccaaagttcgtttattttca 314  Q
    ||||||||||| ||| || ||| | ||||||||||||||||||||||| ||| ||||||||    
T  16672529 aaagtcatttgcaagttatcaaatcatatttcatcatttcaccaaagtccgtctattttca 16672469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 314
Target Start/End: Original strand, 12459649 - 12459725
Alignment:
Q  238 atattaccatgagtataaagtcatttgtaagctaacaagttatatttcatcatttcaccaaagttcgtttattttca 314  Q
    |||||| ||||| || ||||||||||||||| || ||| | ||| ||| | ||||| ||||||||||| ||||||||    
T  12459649 atattatcatgattacaaagtcatttgtaagttatcaaatcataattccttatttcgccaaagttcgtctattttca 12459725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 25235039 - 25235144
Alignment:
Q  295 ccaaagttcgtttattttcatattttt-accaaaaaccaagttacatgctcttatagttctttatcaaacctacatgcttcatctaagttcatcattaca 393  Q
    ||||||||| | |||||| | |||||| | ||||||||||||||||| |||||||||  ||||||||| |||||||||||||||||||||||| ||||||    
T  25235039 ccaaagttcatctatttttaaatttttcatcaaaaaccaagttacatactcttatagggctttatcaatcctacatgcttcatctaagttcatgattaca 25235138  T
Q  394 gtagac 399  Q
     |||||    
T  25235139 atagac 25235144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 3256259 - 3256332
Alignment:
Q  239 tattaccatgagtataaagtcatttgtaagctaacaagttatatttcatcatttcaccaaagttcgtttatttt 312  Q
    ||||| |||||||||||| ||||||| |||||| || ||  || |||| || ||||||||||||||| ||||||    
T  3256259 tattatcatgagtataaaatcatttgcaagctatcatgtcttaattcaacaattcaccaaagttcgtctatttt 3256332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 15662086 - 15662021
Alignment:
Q  273 caagttatatttcatcatttcaccaaagttcgtttattttcatatttttaccaaaaaccaagttac 338  Q
    |||| ||||||||||||||| | |||||||||| |||||||||||||||  |||||| ||||||||    
T  15662086 caagctatatttcatcatttaatcaaagttcgtctattttcatatttttcacaaaaatcaagttac 15662021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 472
Target Start/End: Complemental strand, 15550060 - 15549989
Alignment:
Q  401 agtcataacatcatcattccacttaagaaaaatcatcattcaattattacaagttcatgttcatttttcatt 472  Q
    ||||| |||||||||||| || ||||||||||||||| |   |||||| ||||||||||||||||| |||||    
T  15550060 agtcagaacatcatcatttcatttaagaaaaatcatcgtcagattatttcaagttcatgttcatttctcatt 15549989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 15661970 - 15661896
Alignment:
Q  398 acaagtcataacatcatcattccacttaagaaaaatcatcattcaattattacaagttcatgttcatttttcatt 472  Q
    |||||||||| |||||||||  || |||||||| |||| ||||| || ||| || |||||||||||||| |||||    
T  15661970 acaagtcatatcatcatcatatcatttaagaaacatcaccattcgatcattccatgttcatgttcatttctcatt 15661896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 382
Target Start/End: Original strand, 23806 - 23871
Alignment:
Q  317 tttttaccaaaaaccaagttacatgctcttatagttctttatcaaacctacatgcttcatctaagt 382  Q
    |||||||||||||||||||| |||||| |||| | | |  | |||||||||||| |||||||||||    
T  23806 tttttaccaaaaaccaagtttcatgctattatggctatgcaccaaacctacatgtttcatctaagt 23871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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