View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9008_high_3 (Length: 491)
Name: NF9008_high_3
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 114 - 472
Target Start/End: Complemental strand, 414792 - 414433
Alignment:
| Q |
114 |
tatgaagcaccaatagagacaagtcactgacactaacacgttcacacaaaccggtaataatttnnnnnnntgaatcacacactaacacatgtcagacact |
213 |
Q |
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| T |
414792 |
tatgaagcaccaatagagacaagtcactgacactaacacgttcacacaaaccggtaataatttaaaaaaatgaatcacacactaacacatgtcagacacc |
414693 |
T |
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| Q |
214 |
agacacaacttcgatcagaggtgttagttatacaaattaagaaattaaa-gagaagagttagtaagtaaataaatatgaattaccttaacgaggatatcg |
312 |
Q |
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| T |
414692 |
agacacaacttcgatcagaggtgttagttatacaaattaagaaattaaaagagaagagttagtaagtaattaagtatgaattaccttaacgaggatatcg |
414593 |
T |
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| Q |
313 |
tttttgcgagatttaaactgagaagcaacacgtttaacaagaggatcatcatcagaagcttcaagacgcggaggccaagtttgacgattcttgtaacaga |
412 |
Q |
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| T |
414592 |
tttttgcgagatttaaactgagaagcaacacgtttaacaagaggatcatcatcagaagcttcaagacgcggaggccaagtttgacgattcttgtaacaga |
414493 |
T |
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| Q |
413 |
gaaaaacgtgacgatcgtaagaagctacggttccagcgaggttttctttgtacatctcag |
472 |
Q |
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| T |
414492 |
gaaaaacgtgacgatcgtaagaagctacggttccagcgaggttttctttgtacatctcag |
414433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 414930 - 414875
Alignment:
| Q |
1 |
tcaccttcggagaatccatcctcctcgcgcgcctcacaaactgtaatcatcgtcta |
56 |
Q |
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| T |
414930 |
tcaccttcggagaatccatcctcctcgcgcgcctcacaaactgtaatcatcgtcta |
414875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 361 - 471
Target Start/End: Original strand, 401079 - 401189
Alignment:
| Q |
361 |
tcatcagaagcttcaagacgcggaggccaagtttgacgattcttgtaacagagaaaaacgtgacgatcgtaagaagctacggttccagcgaggttttctt |
460 |
Q |
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| T |
401079 |
tcatcggaggcttcaacacacggaggccaagtttggtggttcttgtaacatagaaagacatgacgatcgtaggattcaactgttccagcaaggttttgct |
401178 |
T |
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| Q |
461 |
tgtacatctca |
471 |
Q |
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| T |
401179 |
tgtacatctca |
401189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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