View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9008_low_1 (Length: 623)
Name: NF9008_low_1
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 14 - 607
Target Start/End: Complemental strand, 22776385 - 22775791
Alignment:
| Q |
14 |
ggtgttccattaaccaaggaagcagggtttcaccaggtagttaacacttaacactaacaacaagtcaatttctcaccattaacactcctaaacaatacgt |
113 |
Q |
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| T |
22776385 |
ggtgttccattaaccaaggaagcagggtttcaccaggtagttaacacttaacactaataacaagtcaatttctcatcattaacactcctaaacaatacgt |
22776286 |
T |
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| Q |
114 |
caattgggtagggattttatcagtttcacatgcataaattgagaactctattggtatagtattgttcaagatgtataaagtaaacatttttctaaataaa |
213 |
Q |
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| T |
22776285 |
caattgggtagggattttatcagtttcacatgcataaattgagaactctaatggtatagtattgttcaagatgtataaagtaaacatttttctaaaaaaa |
22776186 |
T |
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| Q |
214 |
aa-ttgctattttttacaatagattattgaacaaatcttgcacaaatccatgttacattttttaatagcattgctcttttagaaatgttggcatagttag |
312 |
Q |
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| T |
22776185 |
aaattgctattttttacaatagattattgaacaaatcttgcacaaatccatgttacattttttaatagcattgctcttttagaaatgttggcatagttag |
22776086 |
T |
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| Q |
313 |
accttgttctttatttttaaaaatggagaaaatgtctggtagtgtactaatatcaattactaggaatgattggtgacttcgattctcaacttaaggaagg |
412 |
Q |
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| T |
22776085 |
accttgttcattatttttaaaaatggagaaaatgtctggtagtgtactaatatcaattactaggaatgattggtgacttcgattctcaacttaaggaagg |
22775986 |
T |
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| Q |
413 |
aattgacatttacccatgtatgtctttcttttctatgcagtatgatgtgtatggggacctattaggccttctaggagcacatcctgttgccccactagtg |
512 |
Q |
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| T |
22775985 |
aattgacatttacccatgtatgtctttcttttctatgcagtatgatgtgtatggggacctattaggccttctaggagcacatcctgttgccccactagtg |
22775886 |
T |
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| Q |
513 |
tcattgcaccaccttgatgtagtgcaaccgatatttccaaagatgaacagagtacaatcactacagcacttactgaaatctgtgaagcaagattc |
607 |
Q |
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| T |
22775885 |
tcattgcaccaccttgatgtagtgcaaccgatatttccaaagatgaacagagtacaatcactacagcacttaatgaaatctgtgaagcaagattc |
22775791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 448 - 552
Target Start/End: Complemental strand, 40944698 - 40944594
Alignment:
| Q |
448 |
tgcagtatgatgtgtatggggacctattaggccttctaggagcacatcctgttgccccactagtgtcattgcaccaccttgatgtagtgcaaccgatatt |
547 |
Q |
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||||||||||||||||||| || ||||||||||||||||| ||||| ||||| || |||||||||||||| || |||||||||||||| ||||| ||||| |
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| T |
40944698 |
tgcagtatgatgtgtatggagatctattaggccttctaggtgcacaccctgtggctccactagtgtcattacatcaccttgatgtagtacaaccaatatt |
40944599 |
T |
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| Q |
548 |
tccaa |
552 |
Q |
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|||| |
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| T |
40944598 |
cccaa |
40944594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 5180739 - 5180782
Alignment:
| Q |
18 |
ttccattaaccaaggaagcagggtttcaccaggtagttaacact |
61 |
Q |
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| T |
5180739 |
ttccattaaccaaggaagcagagtttcacctggtaattaacact |
5180782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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