View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9008_low_11 (Length: 474)
Name: NF9008_low_11
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 14 - 257
Target Start/End: Complemental strand, 40144170 - 40143939
Alignment:
| Q |
14 |
tttggtgttttggaattacgtccacaaagtgtttaaaaagtcatttattcttgttatggataaatatactttaactgttttggtgccaccttaatgcttt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40144170 |
tttggtgttttggaattacgtccacaaagtgtttaaaa-gtcatttattcttgttatggataaatatactttaactgttttggtgccaccttaatgcttt |
40144072 |
T |
|
| Q |
114 |
ttaccttttcctataatactattattacttacttgttcatatcctttttaactttgtctttttt-acacgtgctaacaacatcactaaactttgctactt |
212 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40144071 |
ttaccttttcctattat------------tacttgttcatatcctttttaactttgtctttttttacacgtgctaacaacatcactaaactttgctactt |
40143984 |
T |
|
| Q |
213 |
ttattaagttatttatcattttcctataacacttttaaagtttca |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40143983 |
ttattaagttatttatcattttcctataacacttttaaagtttca |
40143939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 312 - 455
Target Start/End: Complemental strand, 40143882 - 40143739
Alignment:
| Q |
312 |
gacgagaggtattactcttttataaactcgttttagaccttaactttatttattttgtgagatgagttattttcattcacaatacacataataacgttca |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
40143882 |
gacgagaggtattactcttttataaactcgttttagaccttaactttatttattttgtgagatgagttattctcattcacaatacacataataacattca |
40143783 |
T |
|
| Q |
412 |
gcattaccgaacttcgtacatgtttataaacggtgtgtagtctg |
455 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
40143782 |
gtattaccgaacttcgtacgtgtttataaacggtgtatagtctg |
40143739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University