View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9008_low_14 (Length: 411)
Name: NF9008_low_14
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_14 |
 | |
|
| [»] scaffold0640 (2 HSPs) |
| | |
|
| [»] scaffold2156 (2 HSPs) |
| | |
|
| [»] scaffold0648 (1 HSPs) |
| | |
|
| [»] scaffold0274 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 34)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 337
Target Start/End: Original strand, 18143803 - 18144124
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagtatggataatcttgattggatttctccactttcttccttaaa |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18143803 |
acatcacacattcctctaaacttgtctaccttgacttatcctacagctttgttactggtatggataatcttgattggctttctccactttcttccttaaa |
18143902 |
T |
|
| Q |
116 |
atatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtgaatgt |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| || ||| |
|
|
| T |
18143903 |
atatctcaacctcagtggaattgatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcactattagaattacagttgagttcttgt |
18144002 |
T |
|
| Q |
216 |
aacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttatatac |
315 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| || ||| |
|
|
| T |
18144003 |
aacctgaacaacttaatgatcaacccatatatcaagtatttgaatttgtcgtcaattgtaactcttgatctttctttaaacaacttcacctctcatttac |
18144102 |
T |
|
| Q |
316 |
ctgatgggtttttcaatctcac |
337 |
Q |
| |
|
||||| ||||||| |||||||| |
|
|
| T |
18144103 |
ctgataggttttttaatctcac |
18144124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 19350964 - 19351332
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagtatggataatcttgattggatttctccactttcttccttaaa |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |||| |||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
19350964 |
acatcacacattcctctaaacttgtctaccttgacttatcctacagcttagttaatgatatgaataatcttgattggctttctccactttcttccataaa |
19351063 |
T |
|
| Q |
116 |
atatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtgaatgt |
215 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
19351064 |
atatctcaacctcggtggaattgatcttcataaggaaaccaattggcttcaaatagtgaattcacttccttcactgttaaaattacagttgggtgaatgt |
19351163 |
T |
|
| Q |
216 |
aacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttatatac |
315 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||||||||||||| |||||||||||||||||| | |||| || |||| || | || ||| |
|
|
| T |
19351164 |
aacctgaacaacttc---------ccatctgttgagtatttgaatttgtcttcacttgtaactcttgatctttttcgaaataacttcaactttaatttac |
19351254 |
T |
|
| Q |
316 |
ctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatatatggtgagatacctt |
393 |
Q |
| |
|
| ||||||||||| ||||||||| ||||| |||| | |||| ||||| ||| ||||||||||||||| ||||||||| |
|
|
| T |
19351255 |
cagatgggttttttaatctcaccaaagatctcacttatcttcacctttcacaaagtaatatatatggtaagatacctt |
19351332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 393
Target Start/End: Original strand, 18164720 - 18165094
Alignment:
| Q |
19 |
tcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagtatggataatcttgattggatttctccactttcttccttaaaata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||| || ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
18164720 |
tcacacattcatctaaacttgtctaccttgacttatccaacagcttaattactagtatggataatcttgattggctttctccactttcttccttgaaata |
18164819 |
T |
|
| Q |
119 |
tctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtgaatgtaac |
218 |
Q |
| |
|
||||||||| ||| ||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||| | |||||||||||||| || | || ||| |
|
|
| T |
18164820 |
tctcaaccttagttttattgatcttcataaggaaaccaattggattcaagcagtgagtacacttccttcactattagaattacagttgagtaattgcaac |
18164919 |
T |
|
| Q |
219 |
ctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttatatacctg |
318 |
Q |
| |
|
|||||||||||||| || | ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| | ||| || |
|
|
| T |
18164920 |
ctgaacaacttcataattggaacatcttttaagtatgtgaatttgtcttcaattgtaactcttgatctttcttacaactatttcacctctcacttacttg |
18165019 |
T |
|
| Q |
319 |
atgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatatatggtgagatacctt |
393 |
Q |
| |
|
|||| ||||| ||||||||| ||||||||| | |||| |||| || || |||||| ||||||||||||||| |
|
|
| T |
18165020 |
atggattttttaatctcaccaaagatatcaactttcttagcctttcagggaacaatataaatggtgagatacctt |
18165094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 18115594 - 18115903
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18115594 |
atggataatcttggttggctttctccacattcttccttgaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttcaaatagtga |
18115693 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || | |||||||||||||||||| |||||| || |||||||||||||||||| | |||| |
|
|
| T |
18115694 |
atacacttccttcactattagaattacagttgagtcattgtaacctgaacaacttc---------ccatctgttgagtatttgaatttgtctttacttgt |
18115784 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaat |
374 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| || |||||||||||||||| ||||| ||| ||||| |||| | |||||||||| ||| ||||||| |
|
|
| T |
18115785 |
aactcttgatctttctttaaacaacttcacctctcatttacctgatgggttttttaatcttaccaaagatctcacttatcttgacctttcacagagtaat |
18115884 |
T |
|
| Q |
375 |
atatatggtgagatacctt |
393 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
18115885 |
atatatggtgagatacctt |
18115903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 19461161 - 19461470
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
||||||||||||| |||| ||||||||| ||||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19461161 |
atggataatcttggttggctttctccacattcttccttgaaatatctcgaccttagtggaattcatcttcataaggaaaccaattggcttcaaatagtga |
19461260 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || | |||||||||||||| ||| |||||| || |||||||||||||||||| | |||| |
|
|
| T |
19461261 |
atacacttccttcactattagaattacagttgagtcattgtaacctgaacaatttc---------ccatctgttgagtatttgaatttgtctttacttgt |
19461351 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaat |
374 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || |||||||||||||||| ||||||||| ||||| |||| | |||||||||| ||| ||||||| |
|
|
| T |
19461352 |
aactcttgatctttctttaaacaatttcacctctcatttacctgatgggttttttaatctcaccaaagatctcacttatcttgacctttcacagagtaat |
19461451 |
T |
|
| Q |
375 |
atatatggtgagatacctt |
393 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
19461452 |
atatacggtgagatacctt |
19461470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 19413759 - 19414122
Alignment:
| Q |
18 |
atcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagtatggataatcttgattggatttctccactttcttccttaaaat |
117 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | |||||||| ||||| ||| |||||||||||| || |||| |
|
|
| T |
19413759 |
atcacacattcatctaaacttgtttaccttgacttatcctacagcttagacactatca---ataatcttcattggctttatccactttcttcgttgaaat |
19413855 |
T |
|
| Q |
118 |
atctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtgaatgtaa |
217 |
Q |
| |
|
|||||| ||| ||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| | || | ||||| |
|
|
| T |
19413856 |
atctcacccttagttggattgatcttcataaggaaaccaattggcctcaaatagtgaatacacttccttcactattagaattacagatgagtcattgtaa |
19413955 |
T |
|
| Q |
218 |
cctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttatatacct |
317 |
Q |
| |
|
||| || |||||| |||||| || || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
19413956 |
cctaaataacttc---------ccatctgttgagcatttgaatttgtcttcaattgtaactcttgatctttcttacaacaacttcacctctcatatacct |
19414046 |
T |
|
| Q |
318 |
gatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatatatggtgagatacctt |
393 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||| |||||||||||| || || |||||| ||||||||||||||| |
|
|
| T |
19414047 |
gatgggttttttaatctcaccaaagatctcacctctcttgacctttcatatagcaatatacatggtgagatacctt |
19414122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 75 - 393
Target Start/End: Complemental strand, 17728060 - 17727743
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||| || ||| |
|
|
| T |
17728060 |
atggatagtcttcattggctttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaacaaattggcttcaagtattga |
17727961 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| || ||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
17727960 |
atacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgt |
17727861 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcac-tgagtaa |
373 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| | | |||| ||| ||||| ||||||||| ||||| |||| | | |||||||| ||| ||| || |
|
|
| T |
17727860 |
aactctttatctttcaaacaacgatttcacctctca-cttcctggtggattttttaatctcaccaaagatctcacctatgttgacctt-cacgagagcaa |
17727763 |
T |
|
| Q |
374 |
tatatatggtgagatacctt |
393 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
17727762 |
tatacatggtgagatacctt |
17727743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 75 - 393
Target Start/End: Complemental strand, 19029289 - 19028972
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||||| || ||| |
|
|
| T |
19029289 |
atggatagtcttcattggctttctccactttcttccttacaatatctcaacctcaatggaattgatcttcataaggaaacaaattggcttcaagtattga |
19029190 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||| || ||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19029189 |
atacacttccttcactgttagaattacagttgagtgggtgcaacctaaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgt |
19029090 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcac-tgagtaa |
373 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||| | | |||| ||| ||||| ||||||||| ||||| |||| | | |||||||| ||| ||| || |
|
|
| T |
19029089 |
aactctttatctttcaaacaacgatttcacctctca-cttcctggtggattttttaatctcaccaaagatctcacctatgttgacctt-cacgagagcaa |
19028992 |
T |
|
| Q |
374 |
tatatatggtgagatacctt |
393 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
19028991 |
tatacatggtgagatacctt |
19028972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 17949447 - 17949766
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttca-taaggaaaccaattggcttcaaatagtg |
173 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||| |||||||| |||||| ||||| ||||| |
|
|
| T |
17949447 |
atggataatcttcattggctttctccactttcttccttaaattatctcaacctcggtggaattgatcttcaataaggaaaataattggtttcaagtagtg |
17949546 |
T |
|
| Q |
174 |
aatacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattg |
273 |
Q |
| |
|
||| ||||| ||||| | ||||||||| |||| | | ||||||||||| |||||| |||| | | ||||| | |||||||||||| |||||| ||| |
|
|
| T |
17949547 |
aattcactttcttcactattagaattaaagttgtttcactgtaacctgaataacttcttgattggaacgtctatcaggtatttgaatttatcttcacttg |
17949646 |
T |
|
| Q |
274 |
taactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaa |
373 |
Q |
| |
|
|||||||| ||||| || |||||| |||||||| || |||| |||||||||||||||||||| |||||||||| ||||||||||||||||| | ||| |
|
|
| T |
17949647 |
taactctttatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaaagatatcacctctcttgaccttgcactaaataa |
17949746 |
T |
|
| Q |
374 |
tatatatggtgagatacctt |
393 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17949747 |
tatatatggtgagatacctt |
17949766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 75 - 348
Target Start/End: Original strand, 19380522 - 19380786
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
19380522 |
atggataatcttgattggctttctccactttcttccttaaaatatctcaacctcgatggaatttatcttcataaggaaaataattggtttcaagtagtga |
19380621 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|||||||||||||| | |||||||||||||| || | |||||||||||||||||| |||||| || |||||||||||||||||||| |||| |
|
|
| T |
19380622 |
atacacttccttcactattagaattacagttgagtcattgtaacctgaacaacttc---------ccatctgttgagtatttgaatttgtcttcacttgt |
19380712 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatca |
348 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||| | |||| |||||||| || |||||||| ||||||||| |
|
|
| T |
19380713 |
aactctccatctttctggaaacaacttcacctctcacttaccagatgggttgtttaatctcacgaaagatatca |
19380786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 18102997 - 18103313
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagt------atggataatcttgattggatttctccactttcttc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||| |||| | ||| |||||||||||||||| |
|
|
| T |
18102997 |
acatcacacattcatctaaacttgtctaccttgacttatcctacaacta---tcctattctgcacatggatagtcttcactggctttctccactttcttc |
18103093 |
T |
|
| Q |
110 |
cttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgt |
209 |
Q |
| |
|
|||||||||||||||||| ||| | ||| ||||||||||||||||||| ||| ||||| |||| | |||||||||||||||||||||||||||||| || |
|
|
| T |
18103094 |
cttaaaatatctcaaccttagttggattgatcttcataaggaaaccaactggtttcaagtagtaagtacacttccttcattgttagaattacagttgagt |
18103193 |
T |
|
| Q |
210 |
gaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctctt |
309 |
Q |
| |
|
| |||||||||||||||||| ||||| || ||||||||||||||| |||||||||||| ||||||||||| | |||||||||||| | | |
|
|
| T |
18103194 |
tattgtaacctgaacaacttc---------ccatcagttgagtatttgaatttgtattcaattgtaacccttgatctttcagaaaacaatttcacttttc |
18103284 |
T |
|
| Q |
310 |
atatacctgatgggtttttcaatctcacc |
338 |
Q |
| |
|
|| ||| |||||||||||| ||||||||| |
|
|
| T |
18103285 |
atttacatgatgggttttttaatctcacc |
18103313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 19399337 - 19399646
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| | | | ||| ||||||||||||||||||| ||| ||||| |||| | |
|
|
| T |
19399337 |
atggataatcttgattggctttctccactttcttccttaaaatatctcaaccttaattggattgatcttcataaggaaaccaactggtttcaagtagtaa |
19399436 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
||||||||| |||||||| ||||||||||| ||| |||||||||||||||||| ||||||| || |||||||||||||||||||| |||| |
|
|
| T |
19399437 |
gtacacttccgtcattgtttgaattacagttgagtgcatgtaacctgaacaactt---------tccatctcttgagtatttgaatttgtcttcacttgt |
19399527 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttg-cactgagtaa |
373 |
Q |
| |
|
||||||||||||||| ||||| ||||||| | ||||||||||||||||||| ||| ||||| ||||| |||| | |||| |||||| || | | || |
|
|
| T |
19399528 |
aactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaaagatctcacctgtctttaccttgacaat-aacaa |
19399626 |
T |
|
| Q |
374 |
tatatatggtgagatacctt |
393 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
19399627 |
tatatatggtgagatacctt |
19399646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 75 - 333
Target Start/End: Original strand, 19392769 - 19393027
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||| || ||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19392769 |
atggatagtcttgattggctttctccactttcttcattgaaatatctcttcctaagtggaattgatcttcataaggaaaccaattggcttcaagcagtga |
19392868 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|| |||| ||||| ||||||||||||| ||| ||||||||||||| | ||||||| ||||| |||||| || |||||||||||||||||||| |||| |
|
|
| T |
19392869 |
gtatactttcttcactgttagaattacaattaagtgaatgtaacctcgaaaacttcaagatcaagccatcttttgagtatttgaatttgtcttcacttgt |
19392968 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatc |
333 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| |||||||||| |||| |
|
|
| T |
19392969 |
aactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaatc |
19393027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 18015723 - 18016032
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
||||||||||| |||||| |||| |||| ||| || || |||||||||||||| ||| | ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18015723 |
atggataatctggattggctttcaccacattcgtcgttgaaatatctcaaccttagttggattgatcttcataaggaaaccaattggcttcaaatagtga |
18015822 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|| ||||||||||| | ||||||||| |||| ||| || ||||||||||||||| |||||| || |||||||||||||| ||||| |||| |
|
|
| T |
18015823 |
attcacttccttcactattagaattagagttgagtgggtgcaacctgaacaacttc---------ccatctgttgagtatttgaatttgccttcacttgt |
18015913 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaat |
374 |
Q |
| |
|
||||||| ||||||| ||||| ||||||||| ||||||||||||||||||| ||||||||| ||||| |||| |||||||||||| || || ||| |
|
|
| T |
18015914 |
aactctttctctttctttcaacaacttcacctctcatatacctgatgggttttttaatctcaccaaagatctcacctctcttgacctttcatatagcaat |
18016013 |
T |
|
| Q |
375 |
atatatggtgagatacctt |
393 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
18016014 |
atacatggtgagatacctt |
18016032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 18022363 - 18022740
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagtatggataatcttgattggatttctccactttcttccttaaa |
115 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||||||||| || | || | || ||||||||||| ||| ||||| ||||||||||||| || |
|
|
| T |
18022363 |
acatcacacactcatctaaatttttctaccttgacttatcctttaatgatggtcttcacatagataatcttgactggctttcttcactttcttccttgaa |
18022462 |
T |
|
| Q |
116 |
atatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtgaatgt |
215 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||||| ||| ||||| || | ||| ||||||||||| | ||| |||||||||| | || ||| |
|
|
| T |
18022463 |
atatctcgacctcagtggacttgatcttcataaggaaaccaactggtttcaagtaatcaattcacttccttcactattacaattacagttgagcgattgt |
18022562 |
T |
|
| Q |
216 |
aacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttatatac |
315 |
Q |
| |
|
|| |||| | ||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||| || ||| |
|
|
| T |
18022563 |
aaattgaatagcttcatgatcaacccatctattgagtatttgaatttgtcttcacttgtaactcttgatctttctttcaacaacttcacctctcatttac |
18022662 |
T |
|
| Q |
316 |
ctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatatatggtgagatacctt |
393 |
Q |
| |
|
| |||||||||| ||||||||| ||||||||| | ||||| ||| | ||| |||||| ||||||||||||||| |
|
|
| T |
18022663 |
caaatgggttttttaatctcaccaaagatatcaactatcttgtcctcttagagagcaatatacatggtgagatacctt |
18022740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 16 - 337
Target Start/End: Complemental strand, 14896835 - 14896508
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagt------atggataatcttgattggatttctccactttcttc |
109 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||||| |||| || ||||| | |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
14896835 |
acatcacacattcatctagccttttctaccttgacttatccttcaacgaaggtcctaatctgcacatggataatcttgattggctttctccacattcttc |
14896736 |
T |
|
| Q |
110 |
cttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgt |
209 |
Q |
| |
|
||| |||||||||| ||| ||||||||| ||||||| |||||| |||||||||||||| |||||| ||||||||| ||| | |||||| |||| || | |
|
|
| T |
14896735 |
cttgaaatatctcatccttagtggaattgatcttcacaaggaatccaattggcttcaagtagtgagtacacttccctcactattagaactacaattgact |
14896636 |
T |
|
| Q |
210 |
gaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctctt |
309 |
Q |
| |
|
|| || || ||||||||||||||| ||| ||||| || ||||||||||||||||||||||||||| |||| |||||||| |||||| ||||||||| |
|
|
| T |
14896635 |
gattgcaaactgaacaacttcatgttcaactcatcttttgagtatttgaatttgtcttcaattgtaattcttaatctttctttaaacaacttcacctctc |
14896536 |
T |
|
| Q |
310 |
atatacctgatgggtttttcaatctcac |
337 |
Q |
| |
|
|| | || |||||||||| |||||||| |
|
|
| T |
14896535 |
atttgccaaatgggttttttaatctcac |
14896508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 83 - 393
Target Start/End: Original strand, 18108067 - 18108377
Alignment:
| Q |
83 |
tcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacactt |
182 |
Q |
| |
|
|||| ||||| ||||| ||| ||||||||| |||||||||| ||| ||||| || ||||||||||||||||||| ||| ||||| |||||||| ||||| |
|
|
| T |
18108067 |
tcttcattggctttcttcacattcttccttgaaatatctcagccttggtggagttgatcttcataaggaaaccaactggtttcaagtagtgaattcactt |
18108166 |
T |
|
| Q |
183 |
ccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttg |
282 |
Q |
| |
|
||||| | |||||||||||||| ||| | |||||| || |||||| |||| | ||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
18108167 |
tcttcactattagaattacagttgtttgactataaccttaataacttcttgattggaacatctatcagatatttgaatttgtcttcacttgtaactctta |
18108266 |
T |
|
| Q |
283 |
atctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatatatgg |
382 |
Q |
| |
|
||||| || |||||| |||||||| || |||| |||||||||||||||||||| | |||||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
18108267 |
atcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaatgatatcacctctcttgaccttgcgctgaataatatatatgg |
18108366 |
T |
|
| Q |
383 |
tgagatacctt |
393 |
Q |
| |
|
||||||||||| |
|
|
| T |
18108367 |
tgagatacctt |
18108377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 19375314 - 19375632
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaattt---------atcttcataaggaaaccaattggcttc |
165 |
Q |
| |
|
|||||||||||| | ||| ||||| ||||||||||||| ||||||||||||||| ||||| | | |||||||||||| |||||||||| || |
|
|
| T |
19375314 |
atggataatcttcaatggctttcttcactttcttccttgaaatatctcaacctcggtggagtctttggagttgatcttcataaggtaaccaattggtttg |
19375413 |
T |
|
| Q |
166 |
aaatagtgaatacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtc |
265 |
Q |
| |
|
|| |||||| | ||||||||||| | |||||||||||||| || ||||||||||||||||| ||||||| || ||| |||||||||||| |
|
|
| T |
19375414 |
aagtagtgacttcacttccttcactattagaattacagttgagtcggtgtaacctgaacaactt---------tccatctgttgagtttttgaatttgtc |
19375504 |
T |
|
| Q |
266 |
ttcaattgtaactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgca |
365 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||| | || |||||||||||||||| ||||||||| |||||||||| | |||||||||||| |
|
|
| T |
19375505 |
ttcaattgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggttttttaatctcaccaaagatatcacctatcttgaccttgcg |
19375604 |
T |
|
| Q |
366 |
ctgagtaatatatatggtgagatacctt |
393 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
19375605 |
atgaataatatatatggtgagatacctt |
19375632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 19436437 - 19436729
Alignment:
| Q |
18 |
atcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagt------atggataatcttgattggatttctccactttcttcct |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||| ||||| | ||| |||||||||||||| ||||| | |||||||||| |
|
|
| T |
19436437 |
atcacacattcatctaaacttctctaccttgacttatcgtacaacta---tcctattctgcacatgaataatcttgattggctttcttccctttcttcct |
19436533 |
T |
|
| Q |
112 |
taaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtga |
211 |
Q |
| |
|
|||||||||||||||| | || |||| ||||||||||||||||||| ||| ||||| ||||||| ||||| ||||| | |||||||||||||| ||||| |
|
|
| T |
19436534 |
taaaatatctcaaccttactgaaattgatcttcataaggaaaccaactggtttcaagcagtgaattcactttcttcactattagaattacagttgcgtga |
19436633 |
T |
|
| Q |
212 |
atgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttat |
311 |
Q |
| |
|
||||||| ||||||| ||| |||||| || ||||||| ||||| |||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19436634 |
atgtaacttgaacaaattc---------ccatctgttgagtatttcaatttatcttcacttgtaactcttgatctttctggaaacaaattcacctcttat |
19436724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 79 - 393
Target Start/End: Original strand, 18146454 - 18146768
Alignment:
| Q |
79 |
ataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatac |
178 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| ||||||||| ||| |||| ||| ||||||| ||||||||||| ||| ||||| |||| ||| | |
|
|
| T |
18146454 |
ataatcttcattggctttctccactttcttccttgaaatatctctcccttagtgagattgatcttcacaaggaaaccaactggtttcaagtagtaaattc |
18146553 |
T |
|
| Q |
179 |
acttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaact |
278 |
Q |
| |
|
|||||||||| | ||| ||||| |||| | | |||||||||||||||||||| || | |||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
18146554 |
acttccttcactattaaaattaaagttgtttaattgtaacctgaacaacttcataattaacacatctattgggtatttgaatttgtcttcacttataact |
18146653 |
T |
|
| Q |
279 |
cttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatat |
378 |
Q |
| |
|
||||||||||| ||||| ||||| |||||| || |||||||||||| ||| ||||| ||| ||||||||| | |||| ||||| ||| ||||||| |
|
|
| T |
18146654 |
cttgatctttcaggaaataatttaacctctcatttacctgatgggtattttaatcttaccaaagatatcaactatcttagccttgaggagagcaatatat |
18146753 |
T |
|
| Q |
379 |
atggtgagatacctt |
393 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18146754 |
atggtgagatacctt |
18146768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 19333638 - 19333947
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
||||||| |||| ||||| ||||| |||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||||| | |||||||||||| |
|
|
| T |
19333638 |
atggatagtcttcattggctttcttcactttcttccttaaaatatctcaaccttagtaacattgatcttcctaaggaaaccaatttgtttcaaatagtga |
19333737 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|| ||||||||||| | |||||||||||||| |||| ||||| ||||||||||| |||| | | ||||||||||||||||||||||||| |
|
|
| T |
19333738 |
attcacttccttcactattagaattacagttgagtgattgtaaattgaacaacttc---------ccatttgatgagtatttgaatttgtcttcaattgt |
19333828 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaat |
374 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||| || ||| |||||||||||| ||||| || ||||| ||| | ||| |||||| | || ||| |
|
|
| T |
19333829 |
aactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaatctttccaaagatctcaagtatctcgacctttcttggaacaat |
19333928 |
T |
|
| Q |
375 |
atatatggtgagatacctt |
393 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
19333929 |
atatatggtgagatacctt |
19333947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 24493863 - 24493511
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctac---aacttagttcctagt---atggataatcttgattggatttctccactttcttc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | | ||| | | || | |||||||||||| ||||| || ||||||||||||| |
|
|
| T |
24493863 |
acatcacacattcatctaaacttgtctaccttgacttatcccccctcagctttggtactcttcacatggataatcttcattggcttcctccactttcttc |
24493764 |
T |
|
| Q |
110 |
cttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgt |
209 |
Q |
| |
|
|| |||||||||||||| |||||||| |||||| | |||||||||||||||||||| |||| ||||||||||||| | |||||||||| | | |
|
|
| T |
24493763 |
gttgaaatatctcaaccttagtggaatcgatcttcgtgaggaaaccaattggcttcaagaagtggctacacttccttcactattagaattacgtatgatt |
24493664 |
T |
|
| Q |
210 |
gaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctctt |
309 |
Q |
| |
|
|| |||||||| |||||||||||||||| ||| | || |||||| ||||||||||||| ||||||||||||||||||||| |||||| |||| |||| |
|
|
| T |
24493663 |
gattgtaacctaaacaacttcatgatcaactcattttttgagtattcgaatttgtcttcacttgtaactcttgatctttctgaaaacaacttcagctctc |
24493564 |
T |
|
| Q |
310 |
atatacctgatgggtttttcaatctcaccgaagatatcacatctcttgacctt |
362 |
Q |
| |
|
| |||| ||| ||||| || |||||| |||||||||| | ||||| |||| |
|
|
| T |
24493563 |
agttaccaaatgcattttttaacctcaccaaagatatcacctatcttggcctt |
24493511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 75 - 338
Target Start/End: Original strand, 17941367 - 17941621
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| |||| ||||||||| ||| ||||| ||| |||||||| ||||||| |||||||||||| ||||| |
|
|
| T |
17941367 |
atggataatcttcattggctttctccattttctaccttgaaatatctccgccttagtggcattgatcttcatgaggaaactaattggcttcaagcagtga |
17941466 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|||||||||||||| | ||||| |||| ||| |||||||||||||||||| |||||| || | |||||||||||||||||| |||| |
|
|
| T |
17941467 |
atacacttccttcactattagagttacgattaaaaagttgtaacctgaacaacttc---------ccatctgttgaatatttgaatttgtcttcacttgt |
17941557 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcacc |
338 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17941558 |
aactctttctctttctagaaacaatttcacctcttatatacctgatgggttttttaatctcacc |
17941621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 72 - 393
Target Start/End: Original strand, 16676836 - 16677157
Alignment:
| Q |
72 |
agtatggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatag |
171 |
Q |
| |
|
||||||||||||||| ||||| ||| | |||||||||||| || |||||| |||| |||||| || ||||||||||||||||||||||| |||| | || |
|
|
| T |
16676836 |
agtatggataatcttcattggctttttatactttcttccttgaagtatctcgaccttagtggacttgatcttcataaggaaaccaattggattcagaaag |
16676935 |
T |
|
| Q |
172 |
tgaatacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaat |
271 |
Q |
| |
|
||||||||||||||||| | |||||||| | ||| || ||||| |||||||||||||| ||| |||||||| ||||||||||| |||||||| |
|
|
| T |
16676936 |
tgaatacacttccttcactattagaattgcggttgagttcttgtaaattgaacaacttcatgctcaactcatctattgggtatttgaattcctcttcaat |
16677035 |
T |
|
| Q |
272 |
tgtaactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagt |
371 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| | | ||| | |||||||| ||||||||| ||||||||| |||||||||| || || | |
|
|
| T |
16677036 |
tgtaactcttgatctttcttacaacaatttaacctttcagttactaaacgggtttttaaatctcaccaaagatatcaagcatcttgacctttcatggaat |
16677135 |
T |
|
| Q |
372 |
aatatatatggtgagatacctt |
393 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
16677136 |
aatatacatggtgagatacctt |
16677157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 75 - 349
Target Start/End: Original strand, 19424236 - 19424510
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||| || | |||| |||| ||||||||| ||||| ||| |||| ||||||| ||||| ||| | |
|
|
| T |
19424236 |
atggataatcttgattggctttcttcactttcttcgttggagaatctttaccttagtggaattgatctttctaaagaaagcaattggattcaaggagtca |
19424335 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
||||||||||||| | ||| ||||||| || |||| || || | |||||||||||||||| ||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
19424336 |
gtacacttccttcactattacaattacaaataagtgattggaaaccaaacaacttcatgatcaacccatcaattgagtatttgaatttgtcttcaattgt |
19424435 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcac |
349 |
Q |
| |
|
||| |||||||||||| ||||||||| ||||| || |||||||||||||||| ||||||||| ||||| |||| |
|
|
| T |
19424436 |
aacacttgatctttctttcaacaatttcgcctctcatttacctgatgggttttttaatctcaccaaagatctcac |
19424510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 226 - 393
Target Start/End: Original strand, 17941725 - 17941892
Alignment:
| Q |
226 |
acttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttatatacctgatgggtt |
325 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
17941725 |
acttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggtt |
17941824 |
T |
|
| Q |
326 |
tttcaatctcaccgaagatatcacatctcttgaccttgcac-tgagtaatatatatggtgagatacctt |
393 |
Q |
| |
|
||| ||||||||| ||||| |||| | |||||||||| ||| ||| |||||| ||||||||||||||| |
|
|
| T |
17941825 |
ttttaatctcaccaaagatctcacttatcttgacctt-cacgagagcaatatacatggtgagatacctt |
17941892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 362
Target Start/End: Original strand, 19436731 - 19436937
Alignment:
| Q |
156 |
aattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatt |
255 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | ||||||||| |||| ||| || | ||||||||||||| |||| | |||||||||| |||||| |
|
|
| T |
19436731 |
aattggcttcaaatagtgaattcacttccttcactattagaattaaagttgagtgggtgcagcctgaacaacttcgtgattaatccatctattcagtatt |
19436830 |
T |
|
| Q |
256 |
tgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctct |
355 |
Q |
| |
|
| |||||||||||| ||||||||||| ||||||| | ||| ||||||||||| | |||| ||||||||||| ||||||||| ||||| |||| ||||| |
|
|
| T |
19436831 |
taaatttgtcttcacttgtaactctttatctttcagataacgatttcacctctcacttaccggatgggttttttaatctcaccaaagatctcacctctct |
19436930 |
T |
|
| Q |
356 |
tgacctt |
362 |
Q |
| |
|
| ||||| |
|
|
| T |
19436931 |
ttacctt |
19436937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 25462670 - 25462988
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
|||||||||||| ||||| |||||||| | ||||||||||||||||||||||||| || |||| |||||||||||||||| |||||||||||| |||| |
|
|
| T |
25462670 |
atggataatcttcattggctttctccattatcttccttaaaatatctcaacctcaatgcaattgatcttcataaggaaactaattggcttcaagcagtgt |
25462769 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
||| ||| ||||| | || || || || || | | ||| | ||||||||||||||| || |||||||| |||||||||||||||||| || | |
|
|
| T |
25462770 |
ctactctttcttcactattcgagttgcacttgcaagcttgtgatttgaacaacttcatgaccaaatcatctattgggtatttgaatttgtcttcgctttt |
25462869 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaat |
374 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| || |||||||||| ||||| |||||| | ||||| ||| | |||||||||| || | | |||| |
|
|
| T |
25462870 |
aactcttgatctttcttacaacaacttcacctctcatttacctgatggtttttttaatctctcaaaagatttcatgtatcttgacctttcatttaataat |
25462969 |
T |
|
| Q |
375 |
atatatggtgagatacctt |
393 |
Q |
| |
|
|| ||||||| ||||||| |
|
|
| T |
25462970 |
gtacatggtgacatacctt |
25462988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 19419550 - 19419684
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagtatggataatcttgattggatttctccactttcttccttaaa |
115 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||||||||| |||||| ||| | || |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19419550 |
acatcacacattcatctaaccttgtgaaacttgacttatccttcaactttcttcaca---tgtataatcttgattggctttctccactttcttccttaaa |
19419646 |
T |
|
| Q |
116 |
atatctcaacctcagtggaatttatcttcataaggaaa |
153 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
19419647 |
atatctcaacctcggtggaattgatcttcataaggaaa |
19419684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 19333552 - 19333592
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcc |
56 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19333552 |
acatcacacattcatctaaacttgtataccttgacttatcc |
19333592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 19392692 - 19392736
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctaca |
60 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19392692 |
acatcacgcattcatctaaacttgcctaccttgacttatcctaca |
19392736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 19461087 - 19461127
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcc |
56 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
19461087 |
acatcacacattcatctaaccttttctaccttgacttatcc |
19461127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 25462605 - 25462645
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcc |
56 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
25462605 |
acatcacacattcatctaaacttgactatcttgacttatcc |
25462645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 16676771 - 16676809
Alignment:
| Q |
19 |
tcacacattcatctaaacttgtctaccttgacttatcct |
57 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
16676771 |
tcacacatgcatctaaccttgtctaccttgacttatcct |
16676809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 75 - 393
Target Start/End: Original strand, 5023 - 5341
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||| ||||| |||||||||| ||| ||||| ||| |||||| |||||||||||| ||||||||| ||| | |
|
|
| T |
5023 |
atggataatcttcattggctttcttcactttcatccttgaaatatctcatccttagtgggattgatcttcgtaaggaaaccaactggcttcaagcagtaa |
5122 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
||| ||||||||| | ||||||||||| | || | ||||| || |||||||||||||||| ||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
5123 |
gtacccttccttcactattagaattacaactgagttactgtaaactaaacaacttcatgatcaaaccatctattgagtatttcaatttgtcttcacttgt |
5222 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaat |
374 |
Q |
| |
|
||||||| |||||||||||||||| || ||||| || |||| |||||||||| ||||| ||| |||||||||| |||||||||||||| | | |||| |
|
|
| T |
5223 |
aactctttatctttctggaaacaactttacctccaatttaccaaatgggttttttaatctaaccaaagatatcacctctcttgaccttgcgcaaaataat |
5322 |
T |
|
| Q |
375 |
atatatggtgagatacctt |
393 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
5323 |
atatatggcgagatacctt |
5341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 4955 - 4992
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgactta |
53 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4955 |
acatcacacgttcatctaaacttgtctaccttgactta |
4992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 8459040 - 8459383
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagtatggataatcttgattggatttctccactttcttccttaaa |
115 |
Q |
| |
|
||||||||||| ||||||| ||| | |||||||||||||||||| | ||||| || | || |||||||| | ||| |||||||||||||||||||||| |
|
|
| T |
8459040 |
acatcacacatgcatctaaccttttgcaccttgacttatcctacaccgtagttactgctttgaataatcttcaatggctttctccactttcttccttaaa |
8459139 |
T |
|
| Q |
116 |
atatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtgaatgt |
215 |
Q |
| |
|
| |||||||||||| ||||||| |||||||||||||||| |||||||||||| |||| ||||||| |||| | ||||| ||||| ||| || | ||| |
|
|
| T |
8459140 |
aaatctcaacctcaatggaattgatcttcataaggaaactaattggcttcaagcagtggctacactttcttccctattagagttacacttaagtaagtgt |
8459239 |
T |
|
| Q |
216 |
aacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacctcttatatac |
315 |
Q |
| |
|
|| ||||||||||| || | | |||||| || |||||||||||||||||||| |||||||||||||||||||| | ||||| ||||| ||| | ||| |
|
|
| T |
8459240 |
aaactgaacaactttatcaac---ccatctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcacatctcctttac |
8459336 |
T |
|
| Q |
316 |
ctgatgggtttttcaatctcaccgaagatatcacatctcttgacctt |
362 |
Q |
| |
|
|| |||||||||| ||||| ||| |||||||||| | |||||||||| |
|
|
| T |
8459337 |
ctaatgggttttttaatctgaccaaagatatcacctatcttgacctt |
8459383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 75 - 382
Target Start/End: Complemental strand, 307 - 1
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||| |||||||| ||||||| ||| | ||| ||| |||||| |||||||||||| ||||||||| ||| | |
|
|
| T |
307 |
atggataatcttcattggctttcttcactttcatccttaaa-tatctcatccttattgggattgatcttcgtaaggaaaccaactggcttcaagcagtaa |
209 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
||| |||||||| | ||||||||||| | || | ||||| || |||||||||||||||| |||||||||| ||||||| |||||||||||| |||| |
|
|
| T |
208 |
gtacctttccttcactattagaattacaactgagttactgtaaactaaacaacttcatgatcaatccatctattgagtatttcaatttgtcttcacttgt |
109 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaat |
374 |
Q |
| |
|
||||||| |||||||||||||||| || ||||| || |||| |||||||||| ||||| ||| |||||||||| |||||||||||||| | | |||| |
|
|
| T |
108 |
aactctttatctttctggaaacaactttacctccaatttaccaaatgggttttttaatctaaccaaagatatcacctctcttgaccttgcgcaaaataat |
9 |
T |
|
| Q |
375 |
atatatgg |
382 |
Q |
| |
|
|||||||| |
|
|
| T |
8 |
atatatgg |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 375 - 335
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcc |
56 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
375 |
acatcacacgttcatctaaacttgtctaccttgacttatcc |
335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 78 - 393
Target Start/End: Complemental strand, 2710953 - 2710638
Alignment:
| Q |
78 |
gataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaata |
177 |
Q |
| |
|
||||||||| ||||| |||||||||||||||| || ||||||||||||||||| || ||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2710953 |
gataatcttaattggctttctccactttcttctttgaaatatctcaacctcagcggtattgatcttcataaagaaaccaattggcttcaaatagtgaata |
2710854 |
T |
|
| Q |
178 |
cacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaac |
277 |
Q |
| |
|
||||||||||| | |||||| |||| || | ||||| || | |||||||||||||| || |||||| |||||||||||||||||| || |||| |
|
|
| T |
2710853 |
cacttccttcactattagaagtacaattgtctttttgtaaactaagcaacttcatgatcaacccgtctattgcatatttgaatttgtcttcacttataac |
2710754 |
T |
|
| Q |
278 |
tcttgatctttctggaaacaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatata |
377 |
Q |
| |
|
|||||| |||||| | ||||| ||||||||| | |||| |||||||||| ||||||||| || | |||| | |||||||||| || || |||||| |
|
|
| T |
2710753 |
tcttgaactttcttggaacaacttcacctctcctttaccaaatgggttttttaatctcaccaaacacatcaactatcttgacctttcatatagcaatata |
2710654 |
T |
|
| Q |
378 |
tatggtgagatacctt |
393 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
2710653 |
catggtgagatacctt |
2710638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 15531923 - 15532199
Alignment:
| Q |
18 |
atcacacattcatctaaacttgtctaccttgacttatcctacaacttagttcctagtatggataatcttgattggatttctccactttcttccttaaaat |
117 |
Q |
| |
|
||||||||||||||||| ||| | |||||||||||||||| || | || | |||||||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
15531923 |
atcacacattcatctaaccttttgtaccttgacttatccttaaatggtggtcttcacatggataatcttgattggctttctccactttcatccttgaaat |
15532022 |
T |
|
| Q |
118 |
atctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagttacgtgaatgtaa |
217 |
Q |
| |
|
|||||||||| | | | ||| ||||||||||||||||||| ||| ||||| || || ||||||||||||| | ||||| ||| ||| |||| ||||| |
|
|
| T |
15532023 |
atctcaaccttaattggattgatcttcataaggaaaccaactggattcaagcagagagtacacttccttcactattagatttaaggttgagtgactgtaa |
15532122 |
T |
|
| Q |
218 |
cctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttca |
303 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| | ||||| |||| |
|
|
| T |
15532123 |
actgaacaacttc---------ccatctatcgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttca |
15532199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 16 - 380
Target Start/End: Complemental strand, 13667319 - 13666955
Alignment:
| Q |
16 |
acatcacacattcatctaaacttgtctaccttgacttatcc---tacaacttagttcctagt------atggataatcttgattggatttctccactttc |
106 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||| || | | || | || ||||||||| ||||| |||||||| |||| |
|
|
| T |
13667319 |
acatcacaaattcatctaaacttgtctaccttgacttatccgcctacaattttgataatattcttcacattgataatcttcattggttttctccattttc |
13667220 |
T |
|
| Q |
107 |
ttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaatacacttccttcattgttagaattacagtta |
206 |
Q |
| |
|
|||||| ||||||||| | | ||| ||| |||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||| ||| |
|
|
| T |
13667219 |
ttccttgaaatatctccggtttaatggcattgatcttcataaggaaactaattggctccaagtagtgaatacacttccttcacaattagaattacggttg |
13667120 |
T |
|
| Q |
207 |
cgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgtaactcttgatctttctggaaacaatttcacct |
306 |
Q |
| |
|
| | |||||||||||||||||| |||||| || ||||||||||||||||||| | ||||||||||||||||||| |||||| ||||||| |
|
|
| T |
13667119 |
agaggttgtaacctgaacaacttc---------ccatctcttgagtatttgaatttgtcttcgctggtaactcttgatctttctgaaaacaacttcacct |
13667029 |
T |
|
| Q |
307 |
cttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatatat |
380 |
Q |
| |
|
|| |||||||| ||| |||||| ||||||||| || || |||| || |||||||| ||| |||||||||||| |
|
|
| T |
13667028 |
ctcatatacctaatgagttttttaatctcaccaaaaatctcaccactgttgacctttcacatagtaatatatat |
13666955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 2509634 - 2509746
Alignment:
| Q |
82 |
atcttgattggatttctccactttcttccttaaaatatctcaacc------tcagtggaatttatcttcataaggaaaccaattggcttcaaatagtgaa |
175 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||| | ||| |||||| |
|
|
| T |
2509634 |
atcttcattggctttctccactttcttccttaaaatatctcaaccttggtttcagtaccattgatcttcataagaaaaccaattgggtacaagtagtgag |
2509733 |
T |
|
| Q |
176 |
tacacttccttca |
188 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2509734 |
tacacttccttca |
2509746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0648 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 392
Target Start/End: Complemental strand, 4263 - 4166
Alignment:
| Q |
295 |
acaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatatatggtgagatacct |
392 |
Q |
| |
|
|||| ||||||||| || |||| |||||||||| ||||||||| |||||||||| |||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
4263 |
acaacttcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacct |
4166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 392
Target Start/End: Complemental strand, 3733 - 3636
Alignment:
| Q |
295 |
acaatttcacctcttatatacctgatgggtttttcaatctcaccgaagatatcacatctcttgaccttgcactgagtaatatatatggtgagatacct |
392 |
Q |
| |
|
|||| ||||||||| || |||| |||||||||| ||||||||| |||||||||| |||||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
3733 |
acaacttcacctctaatttaccaaatgggttttttaatctcaccaaagatatcacctctcttgaccttgcgcaaaataatatatatggtgagatacct |
3636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 328
Target Start/End: Original strand, 16436016 - 16436269
Alignment:
| Q |
75 |
atggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaaatagtga |
174 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||| | ||||||||| ||||||||||| ||| ||||| | |||| |||||||||||||||| | || |
|
|
| T |
16436016 |
atggataatcttgactgggtttctccattttcttgttgaaaatatctaaacctcagtgggattgatcttaacaaggcaaccaattggcttcaagcaatgg |
16436115 |
T |
|
| Q |
175 |
atacacttccttcattgttagaattacagttacgtgaatgtaacctgaacaacttcatgatcagtccatctattaagtatttgaatttgtcttcaattgt |
274 |
Q |
| |
|
|| |||||||| ||||||||||||| || | | ||||| |||| ||||||||||| || ||| ||||| | |||| |||||| ||||| || |
|
|
| T |
16436116 |
ctaagcttccttccctgttagaattacaattgaattattgtaatctgagcaacttcatgaccaacccacctattgaacattttaatttgccttcacttaa |
16436215 |
T |
|
| Q |
275 |
aactcttgatctttctggaaacaatttcacctcttatatacctgatgggttttt |
328 |
Q |
| |
|
|||||||| | |||| ||| || ||||| |||| ||||||||||| |||||| |
|
|
| T |
16436216 |
aactcttgttgcttctcaaaagaacttcacttcttctatacctgatgagttttt |
16436269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 16436795 - 16436704
Alignment:
| Q |
76 |
tggataatcttgattggatttctccactttcttccttaaaatatctcaacctcagtggaatttatcttcataaggaaaccaattggcttcaa |
167 |
Q |
| |
|
||||||||||||| ||| ||||| || |||||| ||||||||||||||| |||||||| ||| ||||| || | |||||||||||||||| |
|
|
| T |
16436795 |
tggataatcttgactgggtttctacattttcttgcttaaaatatctcaatctcagtggtattgatcttagcaaagcaaccaattggcttcaa |
16436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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