View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9008_low_16 (Length: 410)

Name: NF9008_low_16
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9008_low_16
NF9008_low_16
[»] chr7 (7 HSPs)
chr7 (211-406)||(4277279-4277476)
chr7 (211-339)||(25862592-25862720)
chr7 (250-292)||(32025272-32025314)
chr7 (250-296)||(32033791-32033837)
chr7 (255-318)||(38836142-38836205)
chr7 (255-318)||(49094549-49094612)
chr7 (262-318)||(8425057-8425113)
[»] chr6 (2 HSPs)
chr6 (211-410)||(31934682-31934882)
chr6 (250-322)||(10501971-10502043)
[»] chr1 (5 HSPs)
chr1 (211-339)||(18187877-18188006)
chr1 (254-324)||(42080689-42080759)
chr1 (232-324)||(40632826-40632918)
chr1 (250-324)||(9057921-9057995)
chr1 (261-318)||(43403898-43403955)
[»] chr4 (4 HSPs)
chr4 (250-322)||(16595094-16595166)
chr4 (255-318)||(3958949-3959012)
chr4 (255-318)||(2048987-2049050)
chr4 (255-318)||(39735816-39735879)
[»] chr8 (3 HSPs)
chr8 (250-324)||(4922771-4922845)
chr8 (261-318)||(6596525-6596582)
chr8 (255-315)||(19168180-19168240)
[»] chr3 (2 HSPs)
chr3 (10-84)||(18163256-18163326)
chr3 (151-207)||(18163341-18163402)
[»] chr2 (8 HSPs)
chr2 (250-319)||(30426132-30426201)
chr2 (252-319)||(32229983-32230050)
chr2 (261-318)||(21949901-21949958)
chr2 (261-318)||(9446975-9447032)
chr2 (261-318)||(31320256-31320313)
chr2 (261-318)||(40275144-40275201)
chr2 (273-318)||(41411526-41411571)
chr2 (274-318)||(14555908-14555952)
[»] chr5 (3 HSPs)
chr5 (250-296)||(27584694-27584740)
chr5 (261-318)||(31610044-31610101)
chr5 (262-318)||(18979870-18979926)


Alignment Details
Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 211 - 406
Target Start/End: Original strand, 4277279 - 4277476
Alignment:
Q  211 tctagaaaacataagagtcctaatggaaacggttctggcggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatc 310  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||| || |||||||||||||||| ||||||||||||    
T  4277279 tctagaaaacataagagtcctaatggaaacggttgtggtggcatcacaagtagtgagcacatccaaaatcaatccaaaaagggtgtcattaaaagcaatc 4277378  T
Q  311 ccaaatatgtttgagtcttgggatgtttca--ttacctttttaccttttgattagattgcatatgtcttgattgtttcccctccctccttgttggttt 406  Q
    |||||||||||||||| |||||||||||||  |||||||| | |||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  4277379 ccaaatatgtttgagtattgggatgtttcattttacctttctgccttttgattagattgcatatgtcttaattgtttcccctccttccttgttggttt 4277476  T

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Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 211 - 339
Target Start/End: Complemental strand, 25862720 - 25862592
Alignment:
Q  211 tctagaaaacataagagtcctaatggaaacggttctggcggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatc 310  Q
    ||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  25862720 tctagaaaacataagagtcctaatggaaaaggttccggtggcatcacaagtagtgagcacatccaaactcgatccaaaaagggtgtaattaaaagcaatc 25862621  T
Q  311 ccaaatatgtttgagtcttgggatgtttc 339  Q
    | ||||||||||||||| || ||||||||    
T  25862620 ctaaatatgtttgagtcatgagatgtttc 25862592  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 32025272 - 32025314
Alignment:
Q  250 ggcatcacaaatagtgagcacatccaaactcgatccaaaaagg 292  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  32025272 ggcatcacaagtagtgagcacatccaaactcgttccaaaaagg 32025314  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 32033791 - 32033837
Alignment:
Q  250 ggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgt 296  Q
    |||||||||| ||||||||| ||||||||||| ||||||||||||||    
T  32033791 ggcatcacaagtagtgagcatatccaaactcgttccaaaaagggtgt 32033837  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 38836142 - 38836205
Alignment:
Q  255 cacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    ||||| ||||||||| || |||||||| |||||||| |||||  | ||||||||||||||||||    
T  38836142 cacaagtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatcccaaatat 38836205  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 49094612 - 49094549
Alignment:
Q  255 cacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    ||||| |||||||||||| ||||| || |||||||| |||||  | ||||||||||||||||||    
T  49094612 cacaagtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatcccaaatat 49094549  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 8425057 - 8425113
Alignment:
Q  262 agtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    ||||||||||| |||||||| ||||| ||||||||  | ||||||||||| ||||||    
T  8425057 agtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatccaaaatat 8425113  T

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Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 211 - 410
Target Start/End: Original strand, 31934682 - 31934882
Alignment:
Q  211 tctagaaaacataagagtcctaatggaaacggttctggcggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatc 310  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||| |||||||||||||||| |||||||||||  ||||||||||||    
T  31934682 tctagaaaacataagagtcctaatgaaaaaggttctggtggcatcacaagtagtgagaacatccaaactcgatctaaaaagggtgtaattaaaagcaatc 31934781  T
Q  311 ccaaatatgtttgagtcttgggatgtttca--ttacctttttaccttttgattagattgcatatgtcttgattgtttcccctccctccttgttggtttgg 408  Q
     ||||||||||||||||| |||||||||||  ||||| |||| ||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  31934782 tcaaatatgtttgagtctcgggatgtttcattttacc-ttttgccttttgattagattgcatttgccttgattgtttcccctccctcctggttggtttgg 31934880  T
Q  409 ga 410  Q
    ||    
T  31934881 ga 31934882  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 10502043 - 10501971
Alignment:
Q  250 ggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatatgttt 322  Q
    |||||||||| |||| |||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||    
T  10502043 ggcatcacaagtagtaagcacatccaaactcgttccaaaaagggtgtaataaaaagcaatcccaaatatgttt 10501971  T

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Target: chr1 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 18187877 - 18188006
Alignment:
Q  211 tctagaaaacataagagtcctaatggaaacggttctggcggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatc 310  Q
    ||||||||||||||||||||||||| ||| ||||| || |||||||||| ||||||||||||||||||||||| |||| |||||||  || |||||||||    
T  18187877 tctagaaaacataagagtcctaatgaaaaaggttccggtggcatcacaagtagtgagcacatccaaactcgattcaaagagggtgtaatttaaagcaatc 18187976  T
Q  311 ccaaatatg-tttgagtcttgggatgtttc 339  Q
    ||||||||| |||||||| || ||||||||    
T  18187977 ccaaatatgttttgagtcatgagatgtttc 18188006  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 42080759 - 42080689
Alignment:
Q  254 tcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatatgtttga 324  Q
    |||||| ||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||||||||||    
T  42080759 tcacaagtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatatgtttga 42080689  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 324
Target Start/End: Original strand, 40632826 - 40632918
Alignment:
Q  232 aatggaaacggttctggcggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatatgtttga 324  Q
    ||||| || |||||||  |||||||||  ||||||||| ||||||||||  || |||||||| ||  | ||||||||||||||||||||||||    
T  40632826 aatggcaaaggttctgatggcatcacaggtagtgagcatatccaaactcattctaaaaagggcgtaatcaaaagcaatcccaaatatgtttga 40632918  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 9057921 - 9057995
Alignment:
Q  250 ggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatatgtttga 324  Q
    ||||| |||| ||||||||||||||||||| |   ||||||||||||  | |||||||||| |||||||||||||    
T  9057921 ggcattacaagtagtgagcacatccaaacttgtctcaaaaagggtgtaatcaaaagcaatctcaaatatgtttga 9057995  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 43403955 - 43403898
Alignment:
Q  261 tagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    |||||| || || |||||||| || |||||||||||| | ||||||||||||||||||    
T  43403955 tagtgaacaaatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatat 43403898  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 16595166 - 16595094
Alignment:
Q  250 ggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatatgttt 322  Q
    |||||||||| ||||||| ||||||||||||| | ||||||||||||  | ||||||||||||||||||||||    
T  16595166 ggcatcacaagtagtgagtacatccaaactcgtttcaaaaagggtgttataaaaagcaatcccaaatatgttt 16595094  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 3959012 - 3958949
Alignment:
Q  255 cacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    |||||||||||||||||| |||||||| || |||||||||||| | ||||||||||||||||||    
T  3959012 cacaaatagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatat 3958949  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 2048987 - 2049050
Alignment:
Q  255 cacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    ||||| ||||||||| || |||||||| ||||||||||||||  | ||||||||||||||||||    
T  2048987 cacaagtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatcccaaatat 2049050  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 39735816 - 39735879
Alignment:
Q  255 cacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    ||||| |||||||||||| |||||||| ||||| ||||||||  | ||||||||||| ||||||    
T  39735816 cacaagtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatccaaaatat 39735879  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 324
Target Start/End: Original strand, 4922771 - 4922845
Alignment:
Q  250 ggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatatgtttga 324  Q
    ||||||| || |||||||||||| |||||||| |||||||||||| || | ||||||| ||||||||||||||||    
T  4922771 ggcatcataagtagtgagcacattcaaactcgttccaaaaagggtctcataaaaagcattcccaaatatgtttga 4922845  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 6596525 - 6596582
Alignment:
Q  261 tagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    ||||||||||||||||||||  || |||||||||||  | ||||||||||| ||||||    
T  6596525 tagtgagcacatccaaactcattctaaaaagggtgtaatcaaaagcaatcctaaatat 6596582  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 315
Target Start/End: Original strand, 19168180 - 19168240
Alignment:
Q  255 cacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaa 315  Q
    ||||| || ||||||||| |||||||| || |||||||||||| | ||||||||| |||||    
T  19168180 cacaattattgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaattccaaa 19168240  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 18163256 - 18163326
Alignment:
Q  10 cagaacctgtgttccaaaaggagactagctagatacatctcttcattatcaaaacaatgatacaaggattaatta 84  Q
    |||||| |||||||||||||||||     |||| |||||||||| ||||||||||||||||||||||||||||||    
T  18163256 cagaacttgtgttccaaaaggaga----ttagaaacatctcttccttatcaaaacaatgatacaaggattaatta 18163326  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 18163341 - 18163402
Alignment:
Q  151 atgttgttagagacgttatatcttcacta-----ttaagacattatatgaatcatctctata 207  Q
    |||||||||||||||| |||||||| |||     |||||||| |||||||||||||||||||    
T  18163341 atgttgttagagacgtcatatcttcgctaaaaccttaagacaatatatgaatcatctctata 18163402  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 250 - 319
Target Start/End: Complemental strand, 30426201 - 30426132
Alignment:
Q  250 ggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatatg 319  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||  | |||| |||||| |||||||    
T  30426201 ggcatcacaagtagtgagcacatccaaactcgttccaaaaagggtgtaataaaaaacaatccaaaatatg 30426132  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 319
Target Start/End: Complemental strand, 32230050 - 32229983
Alignment:
Q  252 catcacaaatagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatatg 319  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||  | |||| |||||| |||||||    
T  32230050 catcacaagtagtgagcacatccaaactcgttccaaaaagggtgtaataaaaaacaatccaaaatatg 32229983  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 21949958 - 21949901
Alignment:
Q  261 tagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    |||||||||||| |||||||| || |||||||||||  | ||||||||||||||||||    
T  21949958 tagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatcccaaatat 21949901  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 9446975 - 9447032
Alignment:
Q  261 tagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    |||||||||||  ||||| || ||||||||||||||  | ||||||||||||||||||    
T  9446975 tagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 9447032  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 31320256 - 31320313
Alignment:
Q  261 tagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    |||||||| ||| ||||| || ||||||||||||||  | ||||||||||||||||||    
T  31320256 tagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 31320313  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 40275144 - 40275201
Alignment:
Q  261 tagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    |||||| || || |||||||| || |||||||||||| | ||||||||||||||||||    
T  40275144 tagtgaacaaatacaaactcgttctaaaaagggtgtcatcaaaagcaatcccaaatat 40275201  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 41411571 - 41411526
Alignment:
Q  273 ccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    ||||||||| ||||||||||||||  | ||||||||||||||||||    
T  41411571 ccaaactcgttccaaaaagggtgtaatcaaaagcaatcccaaatat 41411526  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 14555908 - 14555952
Alignment:
Q  274 caaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    |||||||| ||||||||||||||  | ||||||||||||||||||    
T  14555908 caaactcgttccaaaaagggtgtgatcaaaagcaatcccaaatat 14555952  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 250 - 296
Target Start/End: Original strand, 27584694 - 27584740
Alignment:
Q  250 ggcatcacaaatagtgagcacatccaaactcgatccaaaaagggtgt 296  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  27584694 ggcatcacaagtagtgagcacatccaaactcgttccaaaaagggtgt 27584740  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 31610044 - 31610101
Alignment:
Q  261 tagtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    |||||||||||| ||||| || || |||||||||||  | ||||||||||||||||||    
T  31610044 tagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatat 31610101  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 318
Target Start/End: Original strand, 18979870 - 18979926
Alignment:
Q  262 agtgagcacatccaaactcgatccaaaaagggtgtctttaaaagcaatcccaaatat 318  Q
    ||||| ||||| |||||||| || |||||||||||| | |||| |||||||||||||    
T  18979870 agtgatcacatacaaactcgttctaaaaagggtgtcatcaaaaccaatcccaaatat 18979926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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