View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9008_low_17 (Length: 350)

Name: NF9008_low_17
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9008_low_17
NF9008_low_17
[»] chr5 (11 HSPs)
chr5 (8-260)||(2017973-2018225)
chr5 (259-334)||(2017271-2017346)
chr5 (180-252)||(32389626-32389698)
chr5 (267-331)||(25655821-25655885)
chr5 (180-235)||(18175227-18175282)
chr5 (180-255)||(39147730-39147805)
chr5 (193-254)||(18147719-18147780)
chr5 (195-244)||(28758425-28758474)
chr5 (215-255)||(3198330-3198370)
chr5 (215-255)||(17861979-17862019)
chr5 (215-255)||(40445983-40446023)
[»] chr7 (26 HSPs)
chr7 (180-255)||(30806118-30806193)
chr7 (180-255)||(3392470-3392545)
chr7 (180-255)||(10244881-10244956)
chr7 (188-255)||(41854000-41854067)
chr7 (180-249)||(12935749-12935818)
chr7 (215-255)||(30872025-30872065)
chr7 (188-260)||(32984217-32984289)
chr7 (188-255)||(12640589-12640656)
chr7 (188-255)||(15106691-15106758)
chr7 (180-255)||(45284811-45284886)
chr7 (211-257)||(4611240-4611286)
chr7 (213-255)||(8227349-8227391)
chr7 (213-255)||(21597680-21597722)
chr7 (216-266)||(31170226-31170276)
chr7 (211-245)||(40518912-40518946)
chr7 (215-260)||(29461842-29461887)
chr7 (220-253)||(45329141-45329174)
chr7 (215-255)||(1285090-1285130)
chr7 (215-255)||(3948054-3948094)
chr7 (215-255)||(9819570-9819610)
chr7 (215-255)||(10721495-10721535)
chr7 (183-255)||(23274809-23274881)
chr7 (188-244)||(31769512-31769568)
chr7 (180-256)||(37411729-37411805)
chr7 (215-255)||(47607931-47607971)
chr7 (215-255)||(48527190-48527230)
[»] chr2 (19 HSPs)
chr2 (177-260)||(30392821-30392904)
chr2 (183-257)||(23919472-23919546)
chr2 (188-255)||(14663987-14664054)
chr2 (188-255)||(15233416-15233483)
chr2 (216-255)||(15625345-15625384)
chr2 (180-255)||(23405199-23405274)
chr2 (192-255)||(28202297-28202360)
chr2 (215-256)||(6141219-6141260)
chr2 (192-249)||(9375104-9375161)
chr2 (215-256)||(12413492-12413533)
chr2 (215-256)||(12425552-12425593)
chr2 (215-256)||(29734690-29734731)
chr2 (192-245)||(33424323-33424376)
chr2 (215-255)||(3197100-3197140)
chr2 (213-253)||(3904204-3904244)
chr2 (188-244)||(19612729-19612785)
chr2 (215-255)||(25186263-25186303)
chr2 (215-255)||(27244657-27244697)
chr2 (215-255)||(39761438-39761478)
[»] chr1 (18 HSPs)
chr1 (182-260)||(31401239-31401317)
chr1 (193-245)||(4865827-4865879)
chr1 (193-255)||(10292936-10292998)
chr1 (180-245)||(11333677-11333742)
chr1 (180-245)||(11491698-11491763)
chr1 (188-260)||(15775737-15775809)
chr1 (180-235)||(3229706-3229761)
chr1 (188-255)||(6702579-6702646)
chr1 (188-255)||(14519323-14519390)
chr1 (180-255)||(36666568-36666643)
chr1 (213-255)||(41573288-41573330)
chr1 (211-244)||(17517027-17517060)
chr1 (209-250)||(48145125-48145166)
chr1 (215-255)||(9116893-9116933)
chr1 (215-255)||(15595728-15595768)
chr1 (215-255)||(24874141-24874181)
chr1 (215-255)||(44641527-44641567)
chr1 (211-255)||(48607772-48607816)
[»] chr4 (20 HSPs)
chr4 (180-245)||(49056788-49056853)
chr4 (188-260)||(9661548-9661620)
chr4 (196-256)||(21442637-21442697)
chr4 (180-255)||(27091464-27091539)
chr4 (188-258)||(46582634-46582704)
chr4 (211-256)||(35851724-35851769)
chr4 (180-255)||(37310030-37310105)
chr4 (180-255)||(40051625-40051700)
chr4 (192-255)||(50376653-50376716)
chr4 (188-255)||(53572327-53572394)
chr4 (188-245)||(1458018-1458075)
chr4 (180-245)||(22433363-22433428)
chr4 (180-245)||(30057235-30057300)
chr4 (180-245)||(32339337-32339402)
chr4 (180-244)||(38433322-38433386)
chr4 (180-245)||(41137912-41137977)
chr4 (182-255)||(52699192-52699265)
chr4 (195-255)||(4234292-4234352)
chr4 (200-244)||(10042430-10042474)
chr4 (215-255)||(33933766-33933806)
[»] chr8 (13 HSPs)
chr8 (200-260)||(20872470-20872530)
chr8 (180-254)||(12770372-12770446)
chr8 (193-258)||(23435238-23435303)
chr8 (186-250)||(12510433-12510497)
chr8 (188-255)||(42880951-42881018)
chr8 (180-254)||(11231424-11231498)
chr8 (215-256)||(24696027-24696068)
chr8 (183-255)||(2294094-2294166)
chr8 (215-255)||(7553679-7553719)
chr8 (180-256)||(13105093-13105169)
chr8 (195-255)||(17499097-17499157)
chr8 (180-260)||(32191868-32191948)
chr8 (188-260)||(34472295-34472367)
[»] chr6 (14 HSPs)
chr6 (180-255)||(2488878-2488953)
chr6 (216-260)||(28957104-28957148)
chr6 (200-252)||(30527768-30527820)
chr6 (213-252)||(10999153-10999192)
chr6 (193-256)||(24623316-24623379)
chr6 (188-255)||(30938391-30938458)
chr6 (213-256)||(33608336-33608379)
chr6 (213-255)||(16453356-16453398)
chr6 (215-256)||(2692214-2692255)
chr6 (213-258)||(14945532-14945577)
chr6 (188-245)||(27218897-27218954)
chr6 (215-259)||(7771286-7771330)
chr6 (216-256)||(8330699-8330739)
chr6 (215-255)||(29069483-29069523)
[»] chr3 (16 HSPs)
chr3 (180-255)||(52309102-52309177)
chr3 (213-255)||(31085008-31085050)
chr3 (180-258)||(53432729-53432807)
chr3 (215-255)||(12976623-12976663)
chr3 (180-255)||(4227736-4227811)
chr3 (213-255)||(7827508-7827550)
chr3 (213-255)||(7829896-7829938)
chr3 (211-245)||(35718579-35718613)
chr3 (180-254)||(49443415-49443489)
chr3 (209-258)||(48251572-48251621)
chr3 (212-244)||(11995145-11995177)
chr3 (188-256)||(32776213-32776281)
chr3 (201-245)||(36763442-36763486)
chr3 (215-255)||(37921019-37921059)
chr3 (188-260)||(47098730-47098802)
chr3 (216-256)||(48209233-48209273)
[»] scaffold0330 (1 HSPs)
scaffold0330 (180-245)||(6781-6846)
[»] scaffold0445 (1 HSPs)
scaffold0445 (188-255)||(4014-4081)
[»] scaffold0519 (1 HSPs)
scaffold0519 (180-254)||(2954-3028)
[»] scaffold0012 (1 HSPs)
scaffold0012 (188-254)||(122550-122616)
[»] scaffold0031 (1 HSPs)
scaffold0031 (211-260)||(50024-50073)
[»] scaffold0370 (2 HSPs)
scaffold0370 (209-257)||(10504-10552)
scaffold0370 (209-257)||(15794-15842)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 2018225 - 2017973
Alignment:
Q  8 gacatcatcttttctttcttaatagcccatggtgtttgtggagggttatagaacttaattggtatgaattatgggataagaagtgagattttttagttca 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018225 gacatcatcttttctttcttaatagcccatggtgtttgtggaaggttatagaacttaattggtatgaattatgggataagaagtgagattttttagttca 2018126  T
Q  108 atttcttagttcaaacataaatcgtaggagagtattttatattttttattgggtcagggagacttaaa-taacaagtgggatgtctggggtttgaactcc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||    
T  2018125 atttcttagttcaaacataaatcgtaggagagtattttatattttttattgggtcaaggagacttaaagtaacaagtgggatgtct-gggttagaactcc 2018027  T
Q  207 gtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2018026 gtcttctacatatattatacaatgtccctatcaactgagataaactcacaggaa 2017973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 259 - 334
Target Start/End: Complemental strand, 2017346 - 2017271
Alignment:
Q  259 aaaccagcttatcacattcctagcttctcaaatcttccaaaattttgtgtgccaacttagaattaatcctttctgg 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017346 aaaccagcttatcacattcctagcttctcaaatcttccaaaattttgtgtgccaacttagaattaatcctttctgg 2017271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 252
Target Start/End: Original strand, 32389626 - 32389698
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaact 252  Q
    ||||||| |||||||  ||||||||||| |||||||||||| |||||||| || ||| |||||||| ||||||    
T  32389626 aagtggggtgtctggaatttgaactccgactcctacatataatatgcaatatctctaccaactgagctaaact 32389698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 331
Target Start/End: Complemental strand, 25655885 - 25655821
Alignment:
Q  267 ttatcacattcctagcttctcaaatcttccaaaattttgtgtgccaacttagaattaatcctttc 331  Q
    ||||| |||| ||| |||||||||||||||||| | ||||||||||  |||||||||||| ||||    
T  25655885 ttatctcatttctaacttctcaaatcttccaaattgttgtgtgccagattagaattaatcatttc 25655821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 235
Target Start/End: Complemental strand, 18175282 - 18175227
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccct 235  Q
    ||||||||||||||||||| |||| ||| | |||||||||| ||||||| ||||||    
T  18175282 aagtgggatgtctggggttcgaaccccgacccctacatataatatgcaacgtccct 18175227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 39147805 - 39147730
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| ||| ||||||| |||||||  |||| ||||||| |||||| | | |||| ||||||||||||||||||    
T  39147805 aagtggggtgtttggggttcgaactccagctccaacatataatatgcagtattcctaccaactgagataaactcac 39147730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 18147780 - 18147719
Alignment:
Q  193 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 254  Q
    |||| |||||| |||  |||| ||||||||||||| ||||| ||||||||||| ||||||||    
T  18147780 gggggttgaaccccggatcctgcatatattatgcattgtccttatcaactgagctaaactca 18147719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 244
Target Start/End: Original strand, 28758425 - 28758474
Alignment:
Q  195 ggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 244  Q
    ||||||||| ||| ||||| |||| ||||||||||||||||| |||||||    
T  28758425 ggtttgaaccccgactcctgcataaattatgcaatgtccctaccaactga 28758474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 3198370 - 3198330
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  3198370 catatattatgcaatgtccctaccaactgagctaagctcac 3198330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 17862019 - 17861979
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| |||||||| |||||||| |||||||||    
T  17862019 catatattatgcattgtccctaccaactgagctaaactcac 17861979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 40446023 - 40445983
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  40446023 catatattatgcattgtccttatcaactgagttaaactcac 40445983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 30806193 - 30806118
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||| |||||| |||||||| | ||| |||||| |||||||| |||||| |||||||| |||||||||    
T  30806193 aagtgggatgtccggggttcgaactccgacccctgcatataatatgcaatatccctaccaactgagctaaactcac 30806118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 3392545 - 3392470
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| ||||||||||| |||| ||| | |||||||||| |||||||| ||| ||||||||||| ||| |||||    
T  3392545 aagtggggtgtctggggttcgaaccccgacccctacatataatatgcaatatccatatcaactgagttaagctcac 3392470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 10244881 - 10244956
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| |||| |||||| |||| ||| |||||||||||| |||||||| |||||| |||||||| ||| |||||    
T  10244881 aagtggggtgtccggggttcgaaccccggctcctacatataatatgcaatatccctaccaactgagctaagctcac 10244956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 41854067 - 41854000
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||| ||||||||||||||||| ||| |||| ||||||||||||||||  |||||||| ||| |||||    
T  41854067 tgtccggggtttgaactccgtcccctgcataaattatgcaatgtccctgccaactgagctaagctcac 41854000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 12935818 - 12935749
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataa 249  Q
    |||||||  |||||||||| |||| || || |||||||| ||||||||||||||||  ||||||||||||    
T  12935818 aagtggggcgtctggggttcgaaccccatcccctacataaattatgcaatgtccctgccaactgagataa 12935749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 30872065 - 30872025
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||||||||| || ||||||||||||||||||    
T  30872065 catatattatgcaatgtccataccaactgagataaactcac 30872025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 32984217 - 32984289
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    |||| ||||||||||| ||| |||||  ||||| |||||||| |||||| |||||||| ||| ||||||||||    
T  32984217 tgtccggggtttgaaccccgactcctgtatataatatgcaatatccctaccaactgagctaagctcacaggaa 32984289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 12640589 - 12640656
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  12640589 tgtctggggttcgaaccccggctcctgcatataatatgcaatatccctaccaactgagctaagctcac 12640656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 15106691 - 15106758
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  15106691 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagttaagctcac 15106758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 45284811 - 45284886
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| ||||| |||||||||||||||||||| ||| |||||    
T  45284811 aagtggggtgtccggggttcgaaccccgacccctgcataaattattcaatgtccctatcaactgagctaagctcac 45284886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 4611286 - 4611240
Alignment:
Q  211 cctacatatattatgcaatgtccctatcaactgagataaactcacag 257  Q
    |||||||| ||||||||||||||||| |||||||| ||| |||||||    
T  4611286 cctacataaattatgcaatgtccctaccaactgagctaagctcacag 4611240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 8227391 - 8227349
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  8227391 tacatatattatgcattgtccttatcaactgagctaaactcac 8227349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 21597722 - 21597680
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||||| ||||| ||||||||||||||| |||||    
T  21597722 tacatatattatgcattgtccatatcaactgagataagctcac 21597680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 31170226 - 31170276
Alignment:
Q  216 atatattatgcaatgtccctatcaactgagataaactcacaggaaaccagc 266  Q
    |||||||||||||| || |||||||||||| ||||||||||| | ||||||    
T  31170226 atatattatgcaatatctctatcaactgagctaaactcacagaataccagc 31170276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 40518912 - 40518946
Alignment:
Q  211 cctacatatattatgcaatgtccctatcaactgag 245  Q
    |||||||||||||||||||||||||| ||||||||    
T  40518912 cctacatatattatgcaatgtccctaccaactgag 40518946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 29461842 - 29461887
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    ||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  29461842 catatattatgcattgtccctaccaactgagttaaactcacgggaa 29461887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 45329174 - 45329141
Alignment:
Q  220 attatgcaatgtccctatcaactgagataaactc 253  Q
    ||||||||||||||||| ||||||||||||||||    
T  45329174 attatgcaatgtccctaccaactgagataaactc 45329141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 1285090 - 1285130
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||| ||||||||||||| |||||||||    
T  1285090 catatattatgcattgttcctatcaactgagttaaactcac 1285130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 3948094 - 3948054
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| |||| |||||||||||| |||||||||    
T  3948094 catatattatgcattgtctctatcaactgagttaaactcac 3948054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 9819570 - 9819610
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||| |||| ||||||||||||||||||    
T  9819570 catatattatgcattgttcctaccaactgagataaactcac 9819610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 10721495 - 10721535
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||| |||| ||||||||||||||||||    
T  10721495 catatattatgcattgttcctaccaactgagataaactcac 10721535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 23274809 - 23274881
Alignment:
Q  183 tgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||| ||||| || ||| |||||    
T  23274809 tggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaacttagctaagctcac 23274881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 31769512 - 31769568
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 244  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||    
T  31769512 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactga 31769568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 37411729 - 37411805
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||| |||| || |||  ||||||| | ||| |||| ||||||||||||||||| ||| |||| ||||||||||    
T  37411729 aagtggggtgtccggagttcaaactccgacccctgcataaattatgcaatgtccctaccaattgagctaaactcaca 37411805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 47607931 - 47607971
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||| |||||||||| |||||||| |||||||||    
T  47607931 catatattatgtaatgtccctaccaactgagctaaactcac 47607971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 48527230 - 48527190
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  48527230 catatattatgcattgtccttatcaactgagataagctcac 48527190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 30392821 - 30392904
Alignment:
Q  177 aacaagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    |||||||||  ||||||||||| |||| ||| |||||||||||| |||||||| |||||| |||||||| ||| |||| |||||    
T  30392821 aacaagtggagtgtctggggttcgaaccccgactcctacatataatatgcaatatccctaccaactgagctaagctcaaaggaa 30392904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 23919472 - 23919546
Alignment:
Q  183 tgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacag 257  Q
    |||| |||||||| || |||| ||| | ||| |||||||||||||||||||||| |||||||| ||| |||||||    
T  23919472 tggggtgtctgggattcgaaccccgacccctccatatattatgcaatgtccctaccaactgagctaagctcacag 23919546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 14664054 - 14663987
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||| ||||||||||||| | | ||| |||| ||||||||||||||||| |||||||  |||||||||    
T  14664054 tgtccggggtttgaactctggcccctgcataaattatgcaatgtccctaccaactgaactaaactcac 14663987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 15233483 - 15233416
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||||||||||| | ||| |||||| |||||||| |||||| ||| |||| ||| |||||    
T  15233483 tgtctggggtttgaactccggcccctgcatataatatgcaatatccctaccaattgagctaagctcac 15233416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 15625345 - 15625384
Alignment:
Q  216 atatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  15625345 atatattatgcaatgtccctatcaattgagctaaactcac 15625384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 23405274 - 23405199
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| ||||  ||||| |||| ||| | ||| |||||||||||||||||||||| |||||||| ||| |||||    
T  23405274 aagtggggtgtccagggttcgaaccccgacccctgcatatattatgcaatgtccctaccaactgagctaagctcac 23405199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 255
Target Start/End: Complemental strand, 28202360 - 28202297
Alignment:
Q  192 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||   | ||||||||||||||| ||||||||||||||||| ||| |||||    
T  28202360 tggggtttgaacttcggaccttacatatattatgcattgtccctatcaactgagctaagctcac 28202297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 6141260 - 6141219
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||||||||| ||||| || |||||||||||||||||||    
T  6141260 catatattatgcattgtccttaccaactgagataaactcaca 6141219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 249
Target Start/End: Original strand, 9375104 - 9375161
Alignment:
Q  192 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataa 249  Q
    ||||||| |||| ||| | ||||||||||||||||||||| |||  ||||||||||||    
T  9375104 tggggttcgaaccccgacccctacatatattatgcaatgttcctgccaactgagataa 9375161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 12413533 - 12413492
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  12413533 catatattatgcattgtccttatcaaccgagataaactcaca 12413492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 12425593 - 12425552
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  12425593 catatattatgcattgtccttatcaaccgagataaactcaca 12425552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 29734731 - 29734690
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||    
T  29734731 catatattatgcattgtccatatcaactgagctaaactcaca 29734690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 33424323 - 33424376
Alignment:
Q  192 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||||||||||||  || | ||||||||||||| |||||||||||| ||||    
T  33424323 tggggtttgaactccgaatcttgcatatattatgcactgtccctatcaattgag 33424376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 3197100 - 3197140
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| |||||||| |||||||| |||||||||    
T  3197100 catatattatgcattgtccctaccaactgagctaaactcac 3197140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 3904244 - 3904204
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactc 253  Q
    ||||||||||||||| |||||||||||||| || |||||||    
T  3904244 tacatatattatgcattgtccctatcaactaagttaaactc 3904204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 19612785 - 19612729
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactga 244  Q
    ||||||||||| |||| ||  |||||||||||| |||||||| |||||| |||||||    
T  19612785 tgtctggggttcgaaccccagctcctacatataatatgcaatatccctaccaactga 19612729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 25186263 - 25186303
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  25186263 catatattatgcattgtccatatcaactgagctaaactcac 25186303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 27244697 - 27244657
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||||||||||||||| ||| |||||    
T  27244697 catatattatgcattgtccctatcaactgagctaagctcac 27244657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 39761478 - 39761438
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  39761478 catatattatgcattgtccttatcaactgagctaaactcac 39761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 31401239 - 31401317
Alignment:
Q  182 gtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    ||||| |||| |||||||||||  || ||||| |||| |||||||||||||||||||||||||| ||| ||||| ||||    
T  31401239 gtggggtgtccggggtttgaacctcggctcctgcataaattatgcaatgtccctatcaactgagctaagctcacgggaa 31401317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 4865827 - 4865879
Alignment:
Q  193 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||||||||    
T  4865827 ggggttcgaactccgacccctacatatattatgcaatgtccctaccaactgag 4865879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 10292998 - 10292936
Alignment:
Q  193 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| ||| ||||| | ||||||||||||||| ||||||||||||||||| ||| |||||    
T  10292998 ggggtttaaaccccgtcccttacatatattatgcattgtccctatcaactgagttaagctcac 10292936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 11333742 - 11333677
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||| ||||||||    
T  11333742 aagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgag 11333677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 11491763 - 11491698
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||| ||||||||    
T  11491763 aagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctaccaactgag 11491698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 15775809 - 15775737
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    ||||||||||| |||||||| ||||| |||||| |||||||| |||||| ||| |||| ||| ||||| ||||    
T  15775809 tgtctggggttcgaactccggctcctgcatataatatgcaatatccctaccaattgagttaagctcacgggaa 15775737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 3229706 - 3229761
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccct 235  Q
    |||||||||||| ||||||||||| ||  | |||||||||||||||||| ||||||    
T  3229706 aagtgggatgtccggggtttgaaccccaacccctacatatattatgcaacgtccct 3229761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 6702646 - 6702579
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  6702646 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcac 6702579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 14519390 - 14519323
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||| | |||| ||| |||||  ||||| |||| ||| |||||||||||||||||||||||||    
T  14519390 tgtctggggctcgaaccccgactcctgaatataatatggaatatccctatcaactgagataaactcac 14519323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 36666568 - 36666643
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| ||||||||||||||||| |||||||| ||| |||||    
T  36666568 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagctcac 36666643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 41573288 - 41573330
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||||| |||||||| |||||||| |||||||||    
T  41573288 tacatatattatgcattgtccctaccaactgagttaaactcac 41573330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 244
Target Start/End: Original strand, 17517027 - 17517060
Alignment:
Q  211 cctacatatattatgcaatgtccctatcaactga 244  Q
    ||||||||||||||| ||||||||||||||||||    
T  17517027 cctacatatattatgtaatgtccctatcaactga 17517060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 48145125 - 48145166
Alignment:
Q  209 ctcctacatatattatgcaatgtccctatcaactgagataaa 250  Q
    ||||||| |||||||| ||||||||||| |||||||||||||    
T  48145125 ctcctacctatattatacaatgtccctaccaactgagataaa 48145166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 9116893 - 9116933
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  9116893 catatattatgcattgtccatatcaactgagttaaactcac 9116933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 15595768 - 15595728
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  15595768 catatattatgcaatgtccctaccaactgagctaagctcac 15595728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 24874181 - 24874141
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||| |||||||||||||||||||||||||| ||| |||||    
T  24874181 cataaattatgcaatgtccctatcaactgagctaagctcac 24874141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 44641567 - 44641527
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||| ||||||||||| |||||||||    
T  44641567 catatattatgcattgtccatatcaactgagctaaactcac 44641527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 48607772 - 48607816
Alignment:
Q  211 cctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||  ||||||| ||||||||||||||| |||||||||    
T  48607772 cctacatataaaatgcaatatccctatcaactgagttaaactcac 48607816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 49056853 - 49056788
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||| |||| |||||| |||||||| ||||| |||||| ||||||||||||||| ||||||||    
T  49056853 aagtggggtgtccggggttcgaactccggctcctgcatataatatgcaatgtccctaccaactgag 49056788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 9661620 - 9661548
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    |||| |||||| |||||||| ||| |||||||| |||||||| ||| || |||||||||||||||||| ||||    
T  9661620 tgtccggggttcgaactccgactcttacatataatatgcaatatccataccaactgagataaactcacgggaa 9661548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 21442637 - 21442697
Alignment:
Q  196 gtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||| |||| ||||| | | ||||||||||||||||||||||||||| ||||||||||    
T  21442637 gtttgaattccgactccttcctctattatgcaatgtccctatcaactgagttaaactcaca 21442697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 27091464 - 27091539
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||| |||||| |||||||| | ||| || | ||||| ||||||||||| |||||||| |||||||||    
T  27091464 aagtgggatgtccggggttcgaactccgacccctgcagaaattatacaatgtccctaccaactgagctaaactcac 27091539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 46582704 - 46582634
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacagg 258  Q
    ||||||||||| ||||  || ||||| |||||| |||||||| |||||| |||||||| ||||||||||||    
T  46582704 tgtctggggttcgaacctcggctcctgcatataatatgcaatatccctaccaactgagctaaactcacagg 46582634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 35851724 - 35851769
Alignment:
Q  211 cctacatatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    |||||||||||||||||||||||||| |||||||| ||| ||||||    
T  35851724 cctacatatattatgcaatgtccctaccaactgagttaagctcaca 35851769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 37310105 - 37310030
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||  ||||||||||| ||  | |||||||||| |||||||| ||| || |||||||| |||||||||    
T  37310105 aagtgggatgtacggggtttgaaccccaacccctacatataatatgcaatatccataccaactgagttaaactcac 37310030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 255
Target Start/End: Complemental strand, 40051700 - 40051625
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| ||||||||||| |||| ||  | |||||||||| |||||||| |||||| |||||||| ||| |||||    
T  40051700 aagtggggtgtctggggttcgaacccctacccctacatataatatgcaatatccctaccaactgagctaagctcac 40051625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 192 - 255
Target Start/End: Original strand, 50376653 - 50376716
Alignment:
Q  192 tggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| |||| || || ||| |||||||||||||||||| ||| |||||||| |||||||||    
T  50376653 tggggttcgaaccccttcccctgcatatattatgcaatgtctctaccaactgagttaaactcac 50376716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 53572327 - 53572394
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||| ||||||||||  ||| ||||| |||||| |||||||| ||||||||||||||| ||| |||||    
T  53572327 tgtccggggtttgaatcccggctcctgcatataatatgcaatatccctatcaactgagttaagctcac 53572394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 1458018 - 1458075
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    |||| |||||| |||| ||| ||||| |||||| |||||||| |||||||||||||||    
T  1458018 tgtccggggttcgaaccccggctcctgcatataatatgcaatatccctatcaactgag 1458075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 22433363 - 22433428
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    |||||| |||| || |||| |||||| | | ||| ||||||||||||||||| |||||||||||||    
T  22433363 aagtggaatgtttgaggttcgaactctgaccccttcatatattatgcaatgttcctatcaactgag 22433428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 30057300 - 30057235
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||| |||| ||||||||||| ||| | ||| |||||| |||||||| |||||| ||||||||    
T  30057300 aagtggggtgtccggggtttgaaccccgacccctgcatataatatgcaatatccctaccaactgag 30057235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 32339402 - 32339337
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||| |||||||||||||||| ||| | | | |||||| |||||||| |||||| ||||||||    
T  32339402 aagtggggtgtctggggtttgaaccccgacccttgcatataatatgcaatatccctaacaactgag 32339337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 38433386 - 38433322
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatat-attatgcaatgtccctatcaactga 244  Q
    ||||||| ||||||||||| |||||||| ||||||||||| || ||||| ||| ||||||||||||    
T  38433386 aagtggggtgtctggggttcgaactccgactcctacatataataatgcattgt-cctatcaactga 38433322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 41137912 - 41137977
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||| |||||| |||| |||| ||  | ||| |||||||||||||||||||||| ||||||||    
T  41137912 aagtggggtgtctgtggttcgaaccccaacccctgcatatattatgcaatgtccctaccaactgag 41137977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 255
Target Start/End: Complemental strand, 52699265 - 52699192
Alignment:
Q  182 gtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||| |||| |||||||  | |||  ||||| |||||||| | ||||||||||||| |||||||||    
T  52699265 gtgggatgtctgaggttcgaactccaacccctgtatataatatgcaatattcctatcaactgagttaaactcac 52699192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 4234292 - 4234352
Alignment:
Q  195 ggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||| |||| ||| ||||| |||||| |||||||| ||||||||||||||| ||| |||||    
T  4234292 ggttcgaaccccggctcctgcatataatatgcaatatccctatcaactgagctaagctcac 4234352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 200 - 244
Target Start/End: Original strand, 10042430 - 10042474
Alignment:
Q  200 gaactccgtctcctacatatattatgcaatgtccctatcaactga 244  Q
    |||||||| |||||||||||| |||||||| |||||| |||||||    
T  10042430 gaactccgactcctacatataatatgcaatatccctaccaactga 10042474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 33933766 - 33933806
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||||||||||||| |||||||| ||| |||||    
T  33933766 catatattatgcaatgtccctaccaactgagctaagctcac 33933806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 20872470 - 20872530
Alignment:
Q  200 gaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    |||||||| | ||| |||| |||||||||||||||||||||||||| ||| ||||||||||    
T  20872470 gaactccgacccctgcataaattatgcaatgtccctatcaactgagctaagctcacaggaa 20872530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 12770446 - 12770372
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 254  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| |||||||||||||||||||||||||| ||| ||||    
T  12770446 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctatcaactgagctaagctca 12770372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 258
Target Start/End: Original strand, 23435238 - 23435303
Alignment:
Q  193 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacagg 258  Q
    |||||| |||| ||| ||||| |||||| |||||||| ||||||||||||||| ||| ||||||||    
T  23435238 ggggttcgaaccccggctcctgcatataatatgcaatatccctatcaactgagctaagctcacagg 23435303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 12510433 - 12510497
Alignment:
Q  186 gatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaa 250  Q
    |||||||| |||| |||||||| | | ||||||||||||||||||||||||| || |||| ||||    
T  12510433 gatgtctgaggttcgaactccgacccatacatatattatgcaatgtccctattaattgagttaaa 12510497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 42881018 - 42880951
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||| |||||| |||| ||| |||||||||||| |||||||| |||||| |||||||| ||| |||||    
T  42881018 tgtccggggttcgaaccccggctcctacatataatatgcaatatccctaccaactgagttaagctcac 42880951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 11231498 - 11231424
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 254  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| |||||||||||||||| ||||||||| ||| ||||    
T  11231498 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgagctaagctca 11231424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 24696027 - 24696068
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||    
T  24696027 catatattatgcattgtccatatcaactgagataatctcaca 24696068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 2294094 - 2294166
Alignment:
Q  183 tgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||| ||||||||||| |||| ||| | ||| |||||| |||| ||| |||||||||| |||| |||||||||    
T  2294094 tggggtgtctggggttcgaaccccgacccctgcatataatatgtaatatccctatcaattgagctaaactcac 2294166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 7553719 - 7553679
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| |||||||| |||||||| |||||||||    
T  7553719 catatattatgcattgtccctaccaactgagttaaactcac 7553679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 13105169 - 13105093
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||| |||||| |||| |||| ||| | | | ||||||||||||| |||||||| |||||||| ||| ||||||    
T  13105169 aagtggggtgtctgaggttcgaaccccggcccttgcatatattatgcattgtccctaccaactgagttaatctcaca 13105093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 17499097 - 17499157
Alignment:
Q  195 ggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||| ||  ||||| |||| ||||||||||||||||| ||||||||  ||||||||    
T  17499097 ggtttgaacccctgctcctgcataaattatgcaatgtccctaccaactgagtcaaactcac 17499157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 260
Target Start/End: Original strand, 32191868 - 32191948
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    ||||||| ||||||||||| |||||||  | |||||||| | |||||| ||||||||  ||||||  ||||||||| ||||    
T  32191868 aagtggggtgtctggggttcgaactccaacccctacataaaatatgcattgtccctacaaactgaactaaactcacgggaa 32191948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 34472367 - 34472295
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    ||||||||||| |||| ||  ||||| |||||| |||||||| |||||| |||||||| ||| ||||| ||||    
T  34472367 tgtctggggttcgaaccccaactcctgcatataatatgcaatatccctaccaactgagttaagctcacgggaa 34472295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 2488878 - 2488953
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    |||||||||||| |||||| |||||||| | ||| || | ||||| ||||||||||| |||||||| |||||||||    
T  2488878 aagtgggatgtccggggttcgaactccgacccctgcagaaattatacaatgtccctaccaactgagctaaactcac 2488953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 260
Target Start/End: Complemental strand, 28957148 - 28957104
Alignment:
Q  216 atatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||    
T  28957148 atatattatgcaatgtctttatcaactgagttaaactcacaggaa 28957104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 252
Target Start/End: Complemental strand, 30527820 - 30527768
Alignment:
Q  200 gaactccgtctcctacatatattatgcaatgtccctatcaactgagataaact 252  Q
    |||||||  |||||| |||||||||||||| |||||||||| |||||||||||    
T  30527820 gaactccaactcctatatatattatgcaatatccctatcaattgagataaact 30527768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 10999192 - 10999153
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaact 252  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  10999192 tacatatattatgcaatgtccttatcaactgagttaaact 10999153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 24623316 - 24623379
Alignment:
Q  193 ggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||||||| |||   | ||||||||||||||| ||||| ||||||||||| ||||||||||    
T  24623316 ggggtttgaaccccgaaccttacatatattatgcattgtccatatcaactgagctaaactcaca 24623379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 30938458 - 30938391
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||| |||| |||   ||| |||||||||||||||||||||| |||||||| ||| |||||    
T  30938458 tgtctggggttcgaaccccggtccctgcatatattatgcaatgtccctaccaactgagttaagctcac 30938391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 33608379 - 33608336
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    |||||||||||| || ||||| ||||||||||||||||||||||    
T  33608379 tacatatattatacattgtccttatcaactgagataaactcaca 33608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 16453356 - 16453398
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| | |||||||| ||||||||||||||||||    
T  16453356 tacatatattatgtattgtccctaccaactgagataaactcac 16453398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 2692255 - 2692214
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||    
T  2692255 catatattatgcattgtccatatcaactgagataatctcaca 2692214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 14945532 - 14945577
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcacagg 258  Q
    ||||||||||||||| |||| |||||||||||| ||| ||||||||    
T  14945532 tacatatattatgcactgtctctatcaactgagctaagctcacagg 14945577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 27218954 - 27218897
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    |||| |||||| |||  ||| |||||||||||| |||||||| |||||||||||||||    
T  27218954 tgtccggggttcgaatcccggctcctacatataatatgcaatatccctatcaactgag 27218897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 7771330 - 7771286
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcacagga 259  Q
    |||| |||||||||||||||| ||||||||| ||| |||||||||    
T  7771330 cataaattatgcaatgtccctgtcaactgagctaagctcacagga 7771286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 8330739 - 8330699
Alignment:
Q  216 atatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    ||||||||||||||||||||||| |||||  ||||||||||    
T  8330739 atatattatgcaatgtccctatctactgaactaaactcaca 8330699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 29069523 - 29069483
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||||||||||||||| ||| |||||    
T  29069523 catatattatgcattgtccctatcaactgagctaagctcac 29069483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 52309102 - 52309177
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  52309102 aagtggggtgtctggggttcgaaccccgactcctgcatatagtatgcaatatccctaccaactgagttaagctcac 52309177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 31085050 - 31085008
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||||| ||||| |||||||||||||||||||||    
T  31085050 tacatatattatgcactgtccttatcaactgagataaactcac 31085008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 53432729 - 53432807
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacagg 258  Q
    ||||||| |||| |||||| |||| ||| | ||| |||||| |||||||| |||||| |||||||| ||||||||||||    
T  53432729 aagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagttaaactcacagg 53432807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 12976623 - 12976663
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| ||||||||||||||||| |||||||||    
T  12976623 catatattatgcattgtccctatcaactgagttaaactcac 12976663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 4227736 - 4227811
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||| |||| || ||| |||| ||| | ||| |||| ||||||||||||||||| |||||||| |||||||||    
T  4227736 aagtggggtgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaactgagctaaactcac 4227811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 7827550 - 7827508
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  7827550 tacatatattatgcattgtccatatcaactgagttaaactcac 7827508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 7829938 - 7829896
Alignment:
Q  213 tacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||    
T  7829938 tacatatattatgcattgtccatatcaactgagttaaactcac 7829896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 35718579 - 35718613
Alignment:
Q  211 cctacatatattatgcaatgtccctatcaactgag 245  Q
    |||||||||||||||||||||||||| ||||||||    
T  35718579 cctacatatattatgcaatgtccctaccaactgag 35718613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 49443415 - 49443489
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 254  Q
    ||||||| |||| |||||| |||||||| | ||| |||| ||||||||||||||||  ||| |||| ||||||||    
T  49443415 aagtggggtgtccggggttcgaactccggcccctgcataaattatgcaatgtccctgccaattgagctaaactca 49443489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 258
Target Start/End: Complemental strand, 48251621 - 48251572
Alignment:
Q  209 ctcctacatatattatgcaatgtccctatcaactgagataaactcacagg 258  Q
    ||||| |||||| |||||||| ||||||||||||||| ||| ||||||||    
T  48251621 ctcctgcatataatatgcaatatccctatcaactgagctaagctcacagg 48251572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 11995177 - 11995145
Alignment:
Q  212 ctacatatattatgcaatgtccctatcaactga 244  Q
    ||||||| |||||||||||||||||||||||||    
T  11995177 ctacataaattatgcaatgtccctatcaactga 11995145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 256
Target Start/End: Complemental strand, 32776281 - 32776213
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    |||| |||||| |||| ||| | ||| |||| ||||||||||||||||| |||||||| ||| ||||||    
T  32776281 tgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctaccaactgagctaagctcaca 32776213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 36763486 - 36763442
Alignment:
Q  201 aactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||| | ||| |||||||||||||||||||||| ||||||||    
T  36763486 aactccggcccctgcatatattatgcaatgtccctaccaactgag 36763442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 37921019 - 37921059
Alignment:
Q  215 catatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||||| | ||||||||||||||| |||||||||    
T  37921019 catatattatgcattatccctatcaactgagctaaactcac 37921059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 47098802 - 47098730
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    ||||||||||| |||| ||| | ||| |||||| |||||||| |||||| |||||||| ||| ||||| ||||    
T  47098802 tgtctggggttcgaaccccggcccctgcatataatatgcaatatccctaccaactgagctaagctcacgggaa 47098730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 48209233 - 48209273
Alignment:
Q  216 atatattatgcaatgtccctatcaactgagataaactcaca 256  Q
    |||||||||| | ||||||||||||||||| ||||||||||    
T  48209233 atatattatgtattgtccctatcaactgagctaaactcaca 48209273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 245
Target Start/End: Complemental strand, 6846 - 6781
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgag 245  Q
    ||||||||||| ||||||| ||||  || |||||||||||| |||||||| |||||| ||||||||    
T  6846 aagtgggatgtttggggttcgaacctcgactcctacatataatatgcaatatccctaccaactgag 6781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 4014 - 4081
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactcac 255  Q
    ||||||||||| |||| ||| ||||| |||||| |||||||| |||||| |||||||| ||| |||||    
T  4014 tgtctggggttcgaaccccgactcctgcatataatatgcaatatccctaccaactgagctaagctcac 4081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 2954 - 3028
Alignment:
Q  180 aagtgggatgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 254  Q
    ||||||| |||| |||||| |||| ||| | ||| |||| |||||||||||||||| ||||||||| ||| ||||    
T  2954 aagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctttcaactgagctaagctca 3028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 122616 - 122550
Alignment:
Q  188 tgtctggggtttgaactccgtctcctacatatattatgcaatgtccctatcaactgagataaactca 254  Q
    ||||||||||| ||||| || | |||||||||||||| |||||| |||| ||||| || ||||||||    
T  122616 tgtctggggttcgaacttcgacccctacatatattatacaatgttcctaccaactaagttaaactca 122550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 50024 - 50073
Alignment:
Q  211 cctacatatattatgcaatgtccctatcaactgagataaactcacaggaa 260  Q
    |||||||||| |||||||| ||||||||||||||| ||| ||||| ||||    
T  50024 cctacatataatatgcaatatccctatcaactgagttaagctcacgggaa 50073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0370
Description:

Target: scaffold0370; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 10504 - 10552
Alignment:
Q  209 ctcctacatatattatgcaatgtccctatcaactgagataaactcacag 257  Q
    |||||||||||||||||| |||||||||  || |||| |||||||||||    
T  10504 ctcctacatatattatgctatgtccctaataattgagctaaactcacag 10552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0370; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 15794 - 15842
Alignment:
Q  209 ctcctacatatattatgcaatgtccctatcaactgagataaactcacag 257  Q
    |||||||||||||||||| |||||||||  || |||| |||||||||||    
T  15794 ctcctacatatattatgctatgtccctaataattgagctaaactcacag 15842  T

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