View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9008_low_18 (Length: 341)
Name: NF9008_low_18
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 43586579 - 43586897
Alignment:
| Q |
1 |
taacccaaaaaattagtagtactaaccacccctgtagaatctgcttcacccacagttgtttgacatgctaatctccaattctttggtttctatnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43586579 |
taacccaaaaaattagtagtactaaccacccctgtagaatctgcttcacccacagttgtttgacatgctaatctccaattctttggtttctataaaaaaa |
43586678 |
T |
|
| Q |
101 |
ncacaaagatatcacaattgtaatcttccttgccacaaagagttcacatttcaca-tatacttatggtaagagtttttctttctttctttcaataagaca |
199 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43586679 |
-cacaaagatatcacaattgtaatcttccttgccacaaagagttcacatttcacattatacttatggtaagagtttttctttctttctttcaataagaca |
43586777 |
T |
|
| Q |
200 |
attaagttctttnnnnnnnnnnnnnncaagacaattaatcaagttaaaatttagtcatttaccctcttaagtttttctttctctttgtcggtgcgaggac |
299 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43586778 |
attaagttc-ttaaaaaaaaaaaaaaaaagacaattaatcaagttaaaatttagtcatttaccctcttaagtttttctttctctttgtcggtgcaaggac |
43586876 |
T |
|
| Q |
300 |
tcagaagctccttgccttcaa |
320 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43586877 |
tcagaagctccttgccttcaa |
43586897 |
T |
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