View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9008_low_20 (Length: 306)
Name: NF9008_low_20
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 29946791 - 29947071
Alignment:
| Q |
1 |
atcaattcaattacctgctctgtgttcttaacagtagaaaccttcgccaaaagattcttgggaagcttaacaagtttagcctacaaaacaagtcaaaagt |
100 |
Q |
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| T |
29946791 |
atcaattcaattacctgctgtgtgttcttaacagtagaaaccttcgccaaaagattcttgggaagcttaacaagtttagcctacaaaacaagtcaaaagt |
29946890 |
T |
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| Q |
101 |
caagaccctnnnnnnngtagaaatcaaacaacaacatcaataatcacatatgtagcacaaacacttctgatctttgaagtaccgac------actttaga |
194 |
Q |
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| T |
29946891 |
caagaccct-aaaaaagtagaaatcaaacaacaacatcaataatcacatatgtagcacaaacacttctgatctttttagta-cgacaatctaactttaga |
29946988 |
T |
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| Q |
195 |
ttgaaaccgtgcccggtgtctggcacgtgtcagtgtccaatacaacaaccacacatgtgattactgattacattgaattatgt |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||| |
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| T |
29946989 |
ttgaaaccgtgcccggtgtctggcacgtgtcagtgtccaatacaacaacgacgcatgtgattactgattacattaaattatgt |
29947071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 29947157 - 29947197
Alignment:
| Q |
259 |
tgattacattgaattatgtaattctctttaactaccaccaa |
299 |
Q |
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| T |
29947157 |
tgattacattcaattatgtaattctctttaactactaccaa |
29947197 |
T |
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