View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9008_low_21 (Length: 288)
Name: NF9008_low_21
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 35890 - 36168
Alignment:
| Q |
1 |
atatatttatgtcttaactccgcttctactttttagttgttcaatctcacattatgcatgttcacagatatcaaaattgagtatgattcccgtggtttgt |
100 |
Q |
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| T |
35890 |
atatatttatgtcttcactccgcttctactttttagttgttcaatctcacattatgcatgttcacagatatcaaaattgagtatgattcccgtggtttgt |
35989 |
T |
|
| Q |
101 |
gttatggaaaggattcttcacaacaagcacttttcaaggaaagtgaaaatttcagtggtggttgtggttattggtgttggtgtttgtaccgtaactgatg |
200 |
Q |
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| T |
35990 |
gttatggaaaggattcttcacaacaagcacttttcaaggaaagtgaaaatttcagtggtggttgtggttattggtgttggtgtttgtaccgtaactgatg |
36089 |
T |
|
| Q |
201 |
taaaagttaacctcacaggtttcacatgtgcatgtttagcagttttctctacatctttgcaacaaattgtaagtattat |
279 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36090 |
taaaagttaacctcaaaggtttcacatgtgcatgtttagcagttttctctacatctttgcaacaaattgtaagtattat |
36168 |
T |
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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 222
Target Start/End: Complemental strand, 8676696 - 8676538
Alignment:
| Q |
64 |
acagatatcaaaattgagtatgattcccgtggtttgtgttatggaaaggattcttcacaacaagcacttttcaaggaaagtgaaaatttcagtggtggtt |
163 |
Q |
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||||||||||||| | || |||||||| ||||||||||| |||||| |||| ||||||| ||| |||| |||||| |||||||| | || || ||||| |
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| T |
8676696 |
acagatatcaaaactaagcatgattccggtggtttgtgtgatggaatggatccttcacagcaaacactactcaagggaagtgaaagtgtcggtcatggtt |
8676597 |
T |
|
| Q |
164 |
gtggttattggtgttggtgtttgtaccgtaactgatgtaaaagttaacctcacaggttt |
222 |
Q |
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| T |
8676596 |
gtggttattggtgttggtgtttgcaccgtaactgatgtaaatgttaacttcaaaggttt |
8676538 |
T |
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