View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9008_low_22 (Length: 265)
Name: NF9008_low_22
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_22 |
 | |
|
| [»] scaffold2156 (2 HSPs) |
| | |
|
| [»] scaffold0640 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 37)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 16676791 - 16676535
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||| ||||||| |||||||| ||| | ||||||| ||||||||||||||| ||||| |||||| ||||||||||| ||| | |||||||||||||| |
|
|
| T |
16676791 |
caaggttagatgcatgtgtgaggttttgttgaatggatggaattcttattaggtcaaattcattccagctcaaatccaagtaaattagaaactcaagttc |
16676692 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaaaactt------gctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatg |
194 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16676691 |
tagaatacaaagattcatctcaccttttaagactttgattggctcatcatcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatg |
16676592 |
T |
|
| Q |
195 |
ttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16676591 |
ttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgat |
16676535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 19461105 - 19460863
Alignment:
| Q |
6 |
ttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaa |
105 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
19461105 |
ttagatgaatgtgtgatgttgtgttgaatggatggaaatcttatcacatcaaattcattcagactcaaatccaagtaactgagaaactcaagttctagaa |
19461006 |
T |
|
| Q |
106 |
tacaaagattcatctcacctttcaaaacttgctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatgttgtcgcattg |
205 |
Q |
| |
|
|||||||||||||||||||||| |||| | |||||| |||||||||| | || |||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
19461005 |
tacaaagattcatctcaccttttaaaaatggctcattgtcaaaattagattttccattgagatcaagttttgtaactcttccagtaatgttgtcacagtg |
19460906 |
T |
|
| Q |
206 |
gactccttcccatacacaacagtctttttcagttgaccatgtt |
248 |
Q |
| |
|
|||||||||||| ||||||| ||| |||| |||||||||||| |
|
|
| T |
19460905 |
gactccttcccaagcacaacaatctatttcggttgaccatgtt |
19460863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 18164740 - 18164490
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||| ||||||||| |||||||| ||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
18164740 |
caagtttagatgaatgtgtgaagttgtgttgaattgatgtaattcttatcacatcaaaatcattaagactcaaatccaagtgactgagaaactcaagttc |
18164641 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaaa------acttgctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatg |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
18164640 |
tagaatacaaagattcatctcacctttcaaatatctgattggctcatcttcaaaattagg------tttgagatcaatttttgtaactcttccggtaatg |
18164547 |
T |
|
| Q |
195 |
ttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||| |
|
|
| T |
18164546 |
ttgtcgcagtggactccttcccatacacaacaatctttttcggttgaccacgttgat |
18164490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 19333575 - 19333325
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||||||| |||| || ||||| ||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
19333575 |
caagtttagatgaatgtgtgatgttgtgtggaatggatggaattattatcacgtcaaatacattcagactcaaatccaagtaactgagaaactcaagttc |
19333476 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaaaact-tg-----ctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatg |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || ||||||||||||| ||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
19333475 |
tagaatacaaagattcatctcacctttcaaaaatctgattgactcatcttcaaaacgagg------tttgagatcaagttctgtaactcttccggtaatg |
19333382 |
T |
|
| Q |
195 |
ttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
19333381 |
ttgtcgcagcggactccttcccatacgcaacaatctttttcagttgaccacgttgat |
19333325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 18115538 - 18115300
Alignment:
| Q |
6 |
ttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctga-ctcaaatccaaataactgagaaactcaagttcaaga |
104 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| |||||| |||||| |||||||| ||||| ||| ||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
18115538 |
ttagatgaatgtgtgaggttgtgttgaatggatggaaatcttatcacatcaaaatcatt-tgagctcaaatccaagtaactgagaaactcaagttctaga |
18115440 |
T |
|
| Q |
105 |
atacaaagattcatctcacctttcaaaacttgctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatgttgtcgcatt |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |||||||||| | || |||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
18115439 |
atacaaagattcatctcacctttcaaaaatggctcattgtcaaaattagattttccagtgagatcaagttttgtaactcttccggtaatgttctcacagt |
18115340 |
T |
|
| Q |
205 |
ggactccttcccatacacaacagtctttttcagttgacca |
244 |
Q |
| |
|
||||||||||||| ||||||| ||| |||| |||||||| |
|
|
| T |
18115339 |
ggactccttcccaagcacaacaatctatttcggttgacca |
18115300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 19413780 - 19413522
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||| |||||||||||| || |||| | ||| || ||||||||||| |||||||||||||||||||| |
|
|
| T |
19413780 |
caagtttagatgaatgtgtgatattgtgtttaatagttggaattcttatctcaccaaaataattgtggctcaaatccaagtaactgagaaactcaagttc |
19413681 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaa---------aacttgctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggta |
191 |
Q |
| |
|
|||||||||||||||||||| |||||||| | | |||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
19413680 |
tagaatacaaagattcatctcccctttcaacaaataatcgattatctcatcttcaaaattagg------tttgagatcaatttttgtaactcttccggta |
19413587 |
T |
|
| Q |
192 |
atgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatgtcca |
256 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||| |||||||| |||||||| |||||| |||| |
|
|
| T |
19413586 |
atgttgtcgcagtggactccttcccaaccacaacaatctttttcggttgaccacgttgatatcca |
19413522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 18108025 - 18107784
Alignment:
| Q |
6 |
ttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaa |
105 |
Q |
| |
|
||||||||||||||||| |||| ||||||| ||||||||||||| |||||||| |||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18108025 |
ttagatgaatgtgtgatattgtgttgaatggatggaattcttatgacatcaaaatcattccagctcaaatctaaataactgagaaactcaaggtcaagaa |
18107926 |
T |
|
| Q |
106 |
tacaaagattcatctcacctttcaaaactt------gctcatcttc--aaaattaggctgccctttgagatcaagttttgtaactcttccggtaatgttg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||| ||| |||| || | ||| ||||||||| || ||||||||||||| |||||||| |
|
|
| T |
18107925 |
tacaaagattcatctcacctttcaaaactttaacggacgcatattcaaaaaaataag-tgc----tgagatcaatttctgtaactcttccgataatgttg |
18107831 |
T |
|
| Q |
198 |
tcgcattggactccttcccatacacaacagtctttttcagttgacca |
244 |
Q |
| |
|
|| || |||||| |||||||||||||||| |||||||| |||||||| |
|
|
| T |
18107830 |
tcacagtggacttcttcccatacacaacaatctttttcggttgacca |
18107784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 17941322 - 17941192
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||||||||||| |||||||| | ||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
17941322 |
caagtttagaggaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaatttattatcactcaaatccaaataactgagaaactcaagttc |
17941223 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaaa |
131 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
|
|
| T |
17941222 |
aagaatacaaagattcatctcaccttccaaa |
17941192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 19419573 - 19419327
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| ||||||||||||| |||| ||| | ||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
19419573 |
caaggttagatgaatgtgtgatgttgtgttgaatggatggaattcttatcacattaaatttattatgactcaaatccaagtaactaagaaactcaagttc |
19419474 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaaaac-ttg-----ctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatg |
194 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||| ||| ||||| ||||||| | | ||| ||| || || ||||||||||||||||||| |
|
|
| T |
19419473 |
aaaaatacaaagattcatctcaccttccaaaacattgactgactcatattcaaaaaaa---taagtgttgcgattaatttctgtaactcttccggtaatg |
19419377 |
T |
|
| Q |
195 |
ttgtcgcattggactccttcccatacacaacagtctttttcagttgacca |
244 |
Q |
| |
|
||||| || ||||||||||||||||||||||| |||||||| | |||||| |
|
|
| T |
19419376 |
ttgtcacagtggactccttcccatacacaacaatctttttctgctgacca |
19419327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 18022382 - 18022257
Alignment:
| Q |
5 |
tttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaaga |
104 |
Q |
| |
|
||||||||| ||||||||||||| |||||| ||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18022382 |
tttagatgagtgtgtgatgttgtgttgaatagatggaattcttatcacatcaaattcattatgactcaaatccaaataactaagaaactcaagttcaaga |
18022283 |
T |
|
| Q |
105 |
atacaaagattcatctcacctttcaa |
130 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
18022282 |
atacaaagattcagctcacctttcaa |
18022257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 19399298 - 19399169
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||| ||||||||||||| |||| ||| ||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
19399298 |
caagtttagatgaatgtgtgatattgtgttgaatggatggaattcttatcacatgaaattcattctcactcaaatccaagtaactgagaaactcaagttc |
19399199 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaa |
130 |
Q |
| |
|
|||||||| |||||||||||||||||||| |
|
|
| T |
19399198 |
tagaatacagagattcatctcacctttcaa |
19399169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 19380477 - 19380231
Alignment:
| Q |
7 |
tagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaat |
106 |
Q |
| |
|
||||||||||||| ||||| | ||||||| ||||||||||||| |||||||| | ||| | |||||||||||| ||||| ||||||| |||||||||||| |
|
|
| T |
19380477 |
tagatgaatgtgtaatgttttgttgaatggatggaattcttatcacatcaaaattattttcactcaaatccaagtaactaagaaacttaagttcaagaat |
19380378 |
T |
|
| Q |
107 |
acaaagattcatctcacctttcaaaactt------gctcatcttc--aaaattaggctgccctttgagatcaagttttgtaactcttccggtaatgttgt |
198 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| ||| |||| || | || |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
19380377 |
acaaagattcatctcaccttccaaaactttgactggctcatattcataaaaataag-tg----ttgagatcaatttttgtaactcttctggtaatgttgt |
19380283 |
T |
|
| Q |
199 |
cgcattggactccttcccatacacaacagtctttttcagttgaccatgttga |
250 |
Q |
| |
|
| || ||||| |||| ||| ||||||| || |||||||||||||| ||||| |
|
|
| T |
19380282 |
cacagtggacacctttccaagcacaacaatcattttcagttgaccacgttga |
19380231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 17728110 - 17728327
Alignment:
| Q |
9 |
gatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaatac |
108 |
Q |
| |
|
|||||| |||||||||||| |||||| ||||||||||||| ||||||| | ||| ||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
17728110 |
gatgaacgtgtgatgttgtgatgaatggatggaattcttatggcatcaaatttattgaagctcaaatccaagtaactaagaaactcaagttcaagaatac |
17728209 |
T |
|
| Q |
109 |
aaagattcatctcacctttcaaaac------ttgctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatgttgtcgca |
202 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||| || ||||||| |||||||||||||| |||||||||||| ||||||||||| || |
|
|
| T |
17728210 |
aaagattcatctcaccttccaaaacattgagttgcccatctacataattagg------tttgagatcaagttctgtaactcttccagtaatgttgtcaca |
17728303 |
T |
|
| Q |
203 |
ttggactccttcccatacacaaca |
226 |
Q |
| |
|
||||| |||||||| ||||||| |
|
|
| T |
17728304 |
gtggacaccttcccaagcacaaca |
17728327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 18103020 - 18102895
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| | |||| ||||||||||| ||| |||||||||||||| | |
|
|
| T |
18103020 |
caagtttagatgaatgtgtgatgttgtgttgaatggatggaattcttatcacatcaaaatgattccagctcaaatccaagtaattgagaaactcaagtcc |
18102921 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctt |
126 |
Q |
| |
|
|||||||||||||||||| ||||||| |
|
|
| T |
18102920 |
aagaatacaaagattcatatcacctt |
18102895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 19029339 - 19029556
Alignment:
| Q |
9 |
gatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaatac |
108 |
Q |
| |
|
|||||| |||||||||||| |||||| ||||||||||||| ||||||| | ||| ||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
19029339 |
gatgaacgtgtgatgttgtgatgaatggatggaattcttatggcatcaaatttattgaagctcaaatccaagtaactaagaaactcaagttcaagaatac |
19029438 |
T |
|
| Q |
109 |
aaagattcatctcacctttcaaaac------ttgctcatcttcaaaattaggctgccctttgagatcaagttttgtaactcttccggtaatgttgtcgca |
202 |
Q |
| |
|
|||||||||||||||||| |||||| |||| ||||| || ||||||| |||||||||||||| |||||||||||| ||||||||||| || |
|
|
| T |
19029439 |
aaagattcatctcaccttccaaaacattgagttgcccatctacataattagg------tttgagatcaagttctgtaactcttccagtaatgttgtcaca |
19029532 |
T |
|
| Q |
203 |
ttggactccttcccatacacaaca |
226 |
Q |
| |
|
||||| |||||||| ||||||| |
|
|
| T |
19029533 |
gtggacaccttcccaagcacaaca |
19029556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 19350987 - 19350862
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||| ||||||| |||| |||||||| | ||||| ||||||| |||| |||||||||||||||||||| |
|
|
| T |
19350987 |
caagtttagaggaatgtgtgatgtttttttgaatggatggaatagttatcacatcaaaatgattctcactcaaacccaagtaactgagaaactcaagttc |
19350888 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctt |
126 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
19350887 |
tagaatacaaagattcatctcacctt |
19350862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 19436457 - 19436333
Alignment:
| Q |
2 |
aagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttca |
101 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| ||| ||||||||| |||||||| |||||| |||||||||||| ||||| ||||||||||||| |
|
|
| T |
19436457 |
aagtttagatgaatgtgtgatattgtgttgaatggatgaaattcttatcacatcaaaatcattcacactcaaatccaagtaactaagaaactcaagtttt |
19436358 |
T |
|
| Q |
102 |
agaatacaaagattcatctcacctt |
126 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
19436357 |
agaatacaaagattcatctcacctt |
19436333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 19375267 - 19375141
Alignment:
| Q |
6 |
ttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaa |
105 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | ||||||||||| || ||||| ||||| |||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
19375267 |
ttagatgaatgtgtgaagttgtgttgaatggacggaattcttatcacgtcaaattcattgaaactcaaatccaagtaactgagaaactcaagttctagaa |
19375168 |
T |
|
| Q |
106 |
tacaaagattcatctcacctttcaaaa |
132 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
19375167 |
tataaagattcatctcacctttcaaaa |
19375141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 18015679 - 18015550
Alignment:
| Q |
6 |
ttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaa |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||| ||||| |||||||| ||||| |||||||||||| ||||| ||||| |||||||| | || |
|
|
| T |
18015679 |
ttagaggaatgtgtgatgttgttttgaatggatggaatacttatcacatcaaattcattgaaactcaaatccaagtaactaagaaattcaagttctaaaa |
18015580 |
T |
|
| Q |
106 |
tacaaagattcatctcacctttcaaaactt |
135 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |
|
|
| T |
18015579 |
tacaaaaattcatctcacctttcaaaactt |
18015550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 19392715 - 19392584
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| |||||||||||| || ||||| |||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
19392715 |
caagtttagatgaatgcgtgatgttgcgttgaatggctggaattcttatcacgtcaaaatcattcccgctcaaatccaagtaacttagaaactcaagttg |
19392616 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaaaa |
132 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
|
|
| T |
19392615 |
tagaatacaaagattcatctcaccttccaaaa |
19392584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 14896818 - 14896942
Alignment:
| Q |
7 |
tagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaat |
106 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||| ||||| |||||||| | |||| ||||||||| || |||||||||||||| ||||| ||||| |
|
|
| T |
14896818 |
tagatgaatgtgtgatgttgtgttgagtgactggaatacttatcacatcaaaatgattcatactcaaatctaagtaactgagaaactccagttcgagaat |
14896917 |
T |
|
| Q |
107 |
acaaagattcatctcacctttcaaa |
131 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
14896918 |
acaaagactcatctcacctttcaaa |
14896942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 18143826 - 18143710
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||| ||||||||||||| | |||||| ||||| ||||||||||| ||||| |||||||||||||| |
|
|
| T |
18143826 |
caagtttagaggaatgtgtgatgttgtgttgaatggatggaattcttatcatatcaaaatcattgaatctcaaatccaagtaactaagaaactcaagttc |
18143727 |
T |
|
| Q |
101 |
aagaatacaaagattca |
117 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18143726 |
tagaatacaaagattca |
18143710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 126
Target Start/End: Complemental strand, 18146395 - 18146283
Alignment:
| Q |
14 |
atgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaatacaaaga |
113 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||||| | |||||| | ||| | |||||||||||| ||| | ||||||||||||||||||||||||||| |
|
|
| T |
18146395 |
atgtgtgatattgtgttgaatggatggaattcttatcatatcaaaataattatcactcaaatccaagtaattaagaaactcaagttcaagaatacaaaga |
18146296 |
T |
|
| Q |
114 |
ttcatctcacctt |
126 |
Q |
| |
|
||||||||||||| |
|
|
| T |
18146295 |
ttcatctcacctt |
18146283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 163 - 256
Target Start/End: Complemental strand, 19350846 - 19350753
Alignment:
| Q |
163 |
tgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgatgtcca |
256 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
19350846 |
tgagatcaagttttgtaactcttccagtaatattgtcgcagtggactccgtcccatacacaactatctttttcaattgaccatgttgatatcca |
19350753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 25462628 - 25462503
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | |||||| ||||| | | ||| ||||| | ||| |||||||| |||||||||||||||||||| |
|
|
| T |
25462628 |
caagtttagatgaatgtgtgatgttgtgttgaaaggctggaatacttatgatgttaaattcattatcacttaaatccaagtaactgagaaactcaagttc |
25462529 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctt |
126 |
Q |
| |
|
|||| ||| |||||||||||||||| |
|
|
| T |
25462528 |
tagaacacatagattcatctcacctt |
25462503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 168 - 251
Target Start/End: Complemental strand, 18143712 - 18143629
Alignment:
| Q |
168 |
tcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| | ||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
18143712 |
tcaagttttgtaactcttctgctaatgttgtcgcagtagactccttcccatacgcaacaatttttttcagttgaccatgttgat |
18143629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 24493840 - 24493939
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||| | |||||| || || | ||||| ||||| ||||| |||||||||||||| |
|
|
| T |
24493840 |
caagtttagatgaatgtgtgatgttgttttgaatggttggaatacttatcaaatcaaaatcgttatcgctcaagtccaagtaactaagaaactcaagttc |
24493939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 19436313 - 19436229
Alignment:
| Q |
167 |
atcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| ||| ||| ||||||| |||||||| |||||||| |||||| |
|
|
| T |
19436313 |
atcaagttttgtaactcttccggtaatgttgtcacagtggacacctctccaagcacaacaatctttttcggttgaccacgttgat |
19436229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 14896954 - 14897025
Alignment:
| Q |
164 |
gagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttc |
235 |
Q |
| |
|
|||||||||||||||||||||| | ||| |||||||||| |||||||||||||| ||||||| |||||||| |
|
|
| T |
14896954 |
gagatcaagttttgtaactctttcagtagtgttgtcgcagtggactccttcccaagcacaacaatctttttc |
14897025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 24493994 - 24494068
Alignment:
| Q |
176 |
tgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttga |
250 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||| |||| ||||||| |||||| | |||||||||||||| |
|
|
| T |
24493994 |
tgtaactctgccagtaatgttgtcacattggactcctttccatgcacaacaatcttttacggttgaccatgttga |
24494068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 25462486 - 25462413
Alignment:
| Q |
164 |
gagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcag |
237 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || ||| ||||||||| ||||||| |||||||||| |
|
|
| T |
25462486 |
gagatcaagttttgtaactcgtccggtaatgttgtcacagacgacaccttcccatgcacaacaatctttttcag |
25462413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 18146268 - 18146180
Alignment:
| Q |
162 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttga |
250 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||| || ||||||||| ||| |||||||| ||||||||||||||||| ||||| |
|
|
| T |
18146268 |
ttgagatcaagttttgtaactctgtttgtaatattgtcacaaaggactcctttccaaacacaacaatctttttcagttgaccacgttga |
18146180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 19392575 - 19392503
Alignment:
| Q |
162 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtcttttt |
234 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| || ||||| |||||||| ||||||| ||||||| |
|
|
| T |
19392575 |
ttgagatcaagttttgtaactcttcaggtagtgttgtcacaatggacaccttcccaagcacaacaatcttttt |
19392503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 18015517 - 18015426
Alignment:
| Q |
159 |
cctttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttga |
250 |
Q |
| |
|
||||||||||||| || | ||||||| || ||||||||||| || |||||||||||||| |||||| |||||||| || ||||| ||||| |
|
|
| T |
18015517 |
cctttgagatcaatttctataactctaccagtaatgttgtcacagtggactccttcccaagaacaacaatctttttctgtcgaccacgttga |
18015426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 19424083 - 19424042
Alignment:
| Q |
85 |
tgagaaactcaagttcaagaatacaaagattcatctcacctt |
126 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
19424083 |
tgagaaactcaagttcgagaatacaaagattgatctcacctt |
19424042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 18102862 - 18102792
Alignment:
| Q |
180 |
actcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttga |
250 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||| ||||| | ||||||| |||||||| ||||| |
|
|
| T |
18102862 |
actctcccggtaatgttgtcacagtggactccttcccaagcacaaaaatcttttttggttgaccacgttga |
18102792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 19375114 - 19375037
Alignment:
| Q |
159 |
cctttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttca |
236 |
Q |
| |
|
||||||||||||| || ||||||||| | ||||||||||| || | |||||||||||| |||||| ||||||||| |
|
|
| T |
19375114 |
cctttgagatcaatttctgtaactctactagtaatgttgtcacagtagactccttcccaagaacaacaatctttttca |
19375037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 13667296 - 13667430
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||| |||| |||| |||||||| ||||| ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
13667296 |
caagtttagatgaatttgtgatgttgtgttgaatggatgaaatttttatcacatcaaattcattatgactcaaatccaaatagctgagaaacttaagttc |
13667395 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctttcaaaactt |
135 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
13667396 |
tagaatacaaagattcatcttacctttcaaaactt |
13667430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 13667466 - 13667552
Alignment:
| Q |
165 |
agatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || |||||||||||||| ||||||| |||||| |||||||| |||||| |
|
|
| T |
13667466 |
agattaagttttgtaactcttccggtaatgttgtcacagtggactccttcccaagcacaacaacttttttcggttgaccacgttgat |
13667552 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold2156
Description:
Target: scaffold2156; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 352 - 477
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| || ||||| |||||| || ||||| ||||| | ||||||||||| ||||| | |||||||||||| |
|
|
| T |
352 |
caagtttagatgaacgtgtgatgttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagtaactcaaaaactcaagttc |
451 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctt |
126 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
452 |
tagaatacaaagattcatctcacctt |
477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2156; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 536 - 581
Alignment:
| Q |
206 |
gactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||| |||||| |
|
|
| T |
536 |
gactccttcccatgcacaacaatctttttcggttgaccacgttgat |
581 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 4978 - 4853
Alignment:
| Q |
1 |
caagtttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttc |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| || ||||| |||||| || ||||| ||||| | ||||||||||| ||||| | |||||||||||| |
|
|
| T |
4978 |
caagtttagatgaacgtgtgatgttgtgttgagtgattggaactcttataacgtcaaaatcattgtagctcaaatccaagtaactcaaaaactcaagttc |
4879 |
T |
|
| Q |
101 |
aagaatacaaagattcatctcacctt |
126 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4878 |
tagaatacaaagattcatctcacctt |
4853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 4794 - 4749
Alignment:
| Q |
206 |
gactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||| |||||| |
|
|
| T |
4794 |
gactccttcccatgcacaacaatctttttcggttgaccacgttgat |
4749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 15531939 - 15531816
Alignment:
| Q |
6 |
ttagatgaatgtgtgatgttgtt---ttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaa |
102 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||||||| |||| |||||||| |||||| |||||||||| || ||||| ||||||||||||| | |
|
|
| T |
15531939 |
ttagatgaatgtgtgatattgttattttgaatggatggaatgcttagcacatcaaaatcattccgactcaaatcgaagtaactaagaaactcaagtttta |
15531840 |
T |
|
| Q |
103 |
gaatacaaagattcatctcacctt |
126 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
15531839 |
gaatacaaagattcatctcacctt |
15531816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 15531800 - 15531727
Alignment:
| Q |
163 |
tgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttca |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||| || ||||||||| |||| ||||||| | ||||||| |
|
|
| T |
15531800 |
tgaggtcaagttttgtaactcttccggtcatgttgtcacaatggactcctccccaagcacaacaatttttttca |
15531727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 8458923 - 8458834
Alignment:
| Q |
162 |
ttgagatcaagttttgtaactcttccggtaatgttgtcgcattggactccttcccatacacaacagtctttttcagttgaccatgttgat |
251 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||| || |||||||||| ||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
8458923 |
ttgagatcaagttttgtaactctgccagtaatgctgtcacagtggactcctttccacgcacaacaatctttttcagttgaccacgttgat |
8458834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 8459058 - 8458932
Alignment:
| Q |
6 |
ttagatgaatgtgtgatgttgttttgaatgtatggaattcttattacatcaaactcattctgactcaaatccaaataactgagaaactcaagttcaagaa |
105 |
Q |
| |
|
||||||| |||||||||||||| |||||| ||||||||||||| |||||||| | || ||||||||||| ||||| |||||||||||||| |||| |
|
|
| T |
8459058 |
ttagatgcatgtgtgatgttgtgttgaatcgatggaattcttatcacatcaaatttatgtaagctcaaatccaagtaactcagaaactcaagttctagaa |
8458959 |
T |
|
| Q |
106 |
tacaaagattcatctcacctttcaaaa |
132 |
Q |
| |
|
| ||||||| |||| ||||| ||||| |
|
|
| T |
8458958 |
tggaaagattgatcttaccttccaaaa |
8458932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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