View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9008_low_24 (Length: 260)
Name: NF9008_low_24
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 1696569 - 1696824
Alignment:
| Q |
1 |
atattatattttttggttgggaagttgatgtgagatgccataacattagatagccattactagttcttacatgaccactgatctgcttgaaaaatgag-- |
98 |
Q |
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| T |
1696569 |
atattatatttttaggttgggaagttgatatgagatgccataacattagatagccattactggttcttacatgaccactgatctgcttgaaaaatgagtt |
1696668 |
T |
|
| Q |
99 |
-----nnnnnnnnnnaacacaaacctgcttgaaactgttaatttttggccttataagcattttcttacacaaa--tgcatgatattgatatgcatgctca |
191 |
Q |
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| T |
1696669 |
ttttttattttttttaacacaaacctgcttgaaactgttaatttttggccttataagcattttcttacacaaacctgca------tgatatgcatgctca |
1696762 |
T |
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| Q |
192 |
tcaataagggtattgatgaaatgtacttagtaaatagttgatatgcatgcagaataatctac |
253 |
Q |
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| T |
1696763 |
tcaataagggtattgatgaaatgtacttagtaaatagttgatatgcatgcagaataatctac |
1696824 |
T |
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