View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9008_low_25 (Length: 230)
Name: NF9008_low_25
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 22 - 212
Target Start/End: Original strand, 45455655 - 45455854
Alignment:
| Q |
22 |
taaacaatatggagatgaatatttgca---------cacacagaagaaaaagaaggcaaagtttggagaggattcaagggaagacaaataaaactaataa |
112 |
Q |
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| T |
45455655 |
taaacaatatggagatgaatatttgcagatatgaaacacacagaagaaaaagaaggcaaagtttggagaggattcaagggaagacaaataaaactaataa |
45455754 |
T |
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| Q |
113 |
gaaatatatacatgaaccaagaaaaacaatttctctcagcctaagcatcccaaatttccaactttattttaannnnnnngaaaattaacagtagaattag |
212 |
Q |
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| T |
45455755 |
gaaatatatacatgaaccaagaaaaacaatttctctcagcctaagcatcccaagtttccaactttattttaatttttttgaaaattaacagtagaattag |
45455854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 40165586 - 40165383
Alignment:
| Q |
18 |
agagtaaacaatatggagatgaatatttgca---------cacacagaagaaaaagaaggcaaagtttggagaggattcaagggaagacaaataaaacta |
108 |
Q |
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| T |
40165586 |
agagtaaacaatatggagatgaatatttgcagatatgaaacacacagaagaaaaagaaggcaaagtttagagaggattctaaggaagacaaataaaacta |
40165487 |
T |
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| Q |
109 |
ataagaaatatatacatgaaccaagaaaaacaatttctctcagcctaagcatcccaaatttccaactttattttaannnnnnngaaaattaacagtagaa |
208 |
Q |
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||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
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| T |
40165486 |
ataagtaatatttacatgaaccaagaaaaacagtttctctcagcctaagcatcccaactttccaactttattttaatttttaagaaaaataacagtagaa |
40165387 |
T |
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| Q |
209 |
ttag |
212 |
Q |
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|||| |
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| T |
40165386 |
ttag |
40165383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 7827074 - 7827137
Alignment:
| Q |
48 |
acacacagaagaaaaagaaggcaaagtttggagaggattcaagggaagacaaataaaactaata |
111 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
7827074 |
acacacagaagaaaaagaaggcaaagtttagagaggattcaaaggaagacaaataaaactaata |
7827137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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