View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9008_low_4 (Length: 604)
Name: NF9008_low_4
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 19 - 588
Target Start/End: Original strand, 38223026 - 38223596
Alignment:
| Q |
19 |
cacagattacagaattatcgattgcgtagatctccatgtatgatacatagatagaaaaatatatcttacaataacagtgtgaagtccagctacttttccg |
118 |
Q |
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| T |
38223026 |
cacagattacagaattatcgattgcgtagatctccatgtatgatacatagatagaaaaatatatcttacaataacagtgtgaagtccagctacttttccg |
38223125 |
T |
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| Q |
119 |
cttgcaacatttctaacactgtcatcaaagaaaatctacagaagatataagagaactgtcatgcattgattccaagagtttcaaacctaggggtnnnnnn |
218 |
Q |
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| T |
38223126 |
cttgcaacatttctaacactgtcatcaaagaaaatctacagaagatataagagaactgtcatgcattgattccaagagtttcaaacctaggggtaaaaaa |
38223225 |
T |
|
| Q |
219 |
ncctatagaaataaccacataaaagaagtaatctctccatgtcactttttagg-aagtaatcaatcttactgttttctttgggtccacgttcgcaattct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38223226 |
acctatagaaataaccacataaaagaagtaatctctccatgtcactttttaggtaagtaatcaatcttactgttttctttgggtccacgttcacaattct |
38223325 |
T |
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| Q |
318 |
aatagcagcctcaaaggcttccacagatggtttacagaggattcgttggtaggagttgatagggttaagcgtttcgaagcatataatgccctcaaagcaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38223326 |
aatagcagcctcaaaggcttccacagatggtttacagaggattcgttggtaggagttgatagggttaagcgtttcgaagcatataatgccctcaaagcaa |
38223425 |
T |
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| Q |
418 |
tcttccaagccaagcctgctgagaacttcaatcgcatgtgtgtgatctgcgttggtgaatatctgcaaagagtattgagtattatggatgctctttaatg |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38223426 |
tcttccaagccaagcctgctgagaacttcaatcgcatgtgtgtgatctgcgttggtgaatatctgcaaagaatattgagtattatggatgctctttaatg |
38223525 |
T |
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| Q |
518 |
aacaaactggtatagaagattgaacctttttccacgtacgattttacgctgaggcatggaaagcagaaggt |
588 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38223526 |
aacaaactggtatagaagattgaacctttttccacatacgattttacgctgaggcatggaaagcagaaggt |
38223596 |
T |
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