View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9008_low_6 (Length: 579)
Name: NF9008_low_6
Description: NF9008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9008_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Original strand, 5067193 - 5067589
Alignment:
| Q |
10 |
tgttggacatagaagaaatgttgctttctgaatttaattgttgagttgaattggaacttttcagtcttagcgcatagcaatgtgtgagttattgtaagaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5067193 |
tgttggacatagaagaaatgttgctttctgaatttaattgttgagttgaattggaacttttcagtcttagcgcatagcaatgtgtgagttattgtaagaa |
5067292 |
T |
|
| Q |
110 |
attaagagatggatttaattgaatcataatctctttttaatcgaatcttgtgttttggatgtataattaaattagttgttttctatttatgtagggatgc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5067293 |
attaagagatggatttaattgaatcataatctctttttaattgaatcttgtgttttggatgtataattaaattagttgttttctatttatgtagggatgc |
5067392 |
T |
|
| Q |
210 |
cacaagatttgtaaatttggcttgtttccgtaatttgttaaag--nnnnnnntgttatttcacgtgaagaaaccccttgggaacaatgtattccggtcaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5067393 |
cacaagatttgtaaatttggcttgtttccataatttgttaaagaaaaaaatatgttatttcacgtgaag-aaccccttgggaacaatgtattccggtcaa |
5067491 |
T |
|
| Q |
308 |
tccatttttattgacttca-tttttctcccaaaaccttaataatattttgctaattaaagcttatttctcattggtaagtttgactttcttagcatca |
404 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
5067492 |
tccatttttattgacttcactttttctcccaaaaccttaatgatattttgctaattaaagcttatttctcattgataagtttgtctttcttagcatca |
5067589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 435 - 567
Target Start/End: Original strand, 5067586 - 5067718
Alignment:
| Q |
435 |
atcaaataatggcccttatgactccattttttaactcactcgccctaattacctagttactcttatacaagatgagatggtagaagtactattagaatat |
534 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5067586 |
atcaaataatggcccttacaattccactttttaactccctcgtcctaattacctagttactcttatacaagatgagatggtagaagtactattagaatat |
5067685 |
T |
|
| Q |
535 |
ggttattatgtgttagtctagtgagtaagaagt |
567 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
5067686 |
ggttattatgtgctagtctagtgagtaagaagt |
5067718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University