View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9009_high_17 (Length: 208)

Name: NF9009_high_17
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9009_high_17
NF9009_high_17
[»] chr2 (17 HSPs)
chr2 (65-185)||(23395921-23396039)
chr2 (16-185)||(6752010-6752177)
chr2 (65-193)||(11226126-11226252)
chr2 (62-168)||(41069655-41069759)
chr2 (30-182)||(31750455-31750603)
chr2 (77-140)||(39729017-39729080)
chr2 (76-165)||(32832589-32832676)
chr2 (62-164)||(19037039-19037128)
chr2 (111-178)||(3496809-3496874)
chr2 (81-140)||(28640141-28640200)
chr2 (81-140)||(40204728-40204787)
chr2 (63-173)||(15141880-15141977)
chr2 (92-140)||(36562752-36562800)
chr2 (81-140)||(13477690-13477749)
chr2 (85-136)||(38529885-38529936)
chr2 (95-140)||(8209324-8209369)
chr2 (81-134)||(33433419-33433472)
[»] chr5 (17 HSPs)
chr5 (29-190)||(34928777-34928936)
chr5 (63-131)||(14151925-14151993)
chr5 (64-136)||(22658862-22658934)
chr5 (81-140)||(19824615-19824674)
chr5 (111-183)||(37515593-37515663)
chr5 (85-140)||(33922867-33922922)
chr5 (81-132)||(14281810-14281862)
chr5 (91-142)||(18623597-18623648)
chr5 (30-134)||(27554873-27554977)
chr5 (81-140)||(33953159-33953218)
chr5 (81-134)||(22029851-22029904)
chr5 (84-140)||(9956638-9956694)
chr5 (81-134)||(3622203-3622256)
chr5 (63-127)||(14139407-14139469)
chr5 (66-99)||(22473597-22473630)
chr5 (83-140)||(42321091-42321148)
chr5 (80-132)||(22653519-22653571)
[»] chr3 (14 HSPs)
chr3 (63-182)||(10688599-10688716)
chr3 (62-134)||(47548873-47548945)
chr3 (30-178)||(4037136-4037271)
chr3 (77-164)||(39485467-39485554)
chr3 (111-185)||(49279477-49279549)
chr3 (62-140)||(50700045-50700121)
chr3 (111-178)||(11233501-11233566)
chr3 (63-140)||(46348375-46348452)
chr3 (65-178)||(39972987-39973087)
chr3 (81-139)||(34305819-34305877)
chr3 (62-102)||(39350775-39350815)
chr3 (111-166)||(39994198-39994251)
chr3 (86-122)||(132151-132187)
chr3 (82-138)||(42466959-42467015)
[»] chr8 (16 HSPs)
chr8 (64-168)||(4834954-4835056)
chr8 (80-140)||(20896187-20896247)
chr8 (77-164)||(35793178-35793263)
chr8 (81-140)||(44132874-44132933)
chr8 (111-183)||(33938623-33938693)
chr8 (81-140)||(1898098-1898157)
chr8 (77-140)||(22786576-22786639)
chr8 (104-168)||(41474302-41474364)
chr8 (82-134)||(33445807-33445858)
chr8 (63-102)||(16499803-16499842)
chr8 (63-102)||(16508728-16508767)
chr8 (98-140)||(12964361-12964403)
chr8 (81-134)||(35910617-35910668)
chr8 (63-140)||(6261081-6261158)
chr8 (81-129)||(10968543-10968591)
chr8 (80-132)||(44077744-44077796)
[»] chr4 (23 HSPs)
chr4 (62-173)||(29544144-29544253)
chr4 (62-168)||(46079322-46079426)
chr4 (63-185)||(52673181-52673301)
chr4 (82-165)||(29724351-29724432)
chr4 (78-185)||(29693184-29693287)
chr4 (77-168)||(53406486-53406575)
chr4 (63-134)||(44015395-44015466)
chr4 (80-140)||(5052119-5052179)
chr4 (81-136)||(19473052-19473107)
chr4 (83-141)||(31455897-31455955)
chr4 (82-140)||(50041816-50041874)
chr4 (82-140)||(50049038-50049096)
chr4 (77-140)||(23332136-23332199)
chr4 (77-140)||(40202245-40202308)
chr4 (81-134)||(52198385-52198438)
chr4 (81-133)||(36498600-36498652)
chr4 (92-131)||(1208706-1208745)
chr4 (63-102)||(9116228-9116267)
chr4 (81-136)||(31203355-31203410)
chr4 (63-140)||(11077844-11077921)
chr4 (91-140)||(30643603-30643652)
chr4 (77-134)||(51853503-51853560)
chr4 (81-134)||(53176876-53176929)
[»] chr1 (26 HSPs)
chr1 (63-168)||(48914968-48915071)
chr1 (63-168)||(48915359-48915462)
chr1 (63-185)||(19456293-19456413)
chr1 (63-168)||(48915160-48915261)
chr1 (64-185)||(26478550-26478669)
chr1 (63-173)||(50539711-50539819)
chr1 (65-140)||(3950280-3950355)
chr1 (63-185)||(27907691-27907800)
chr1 (65-185)||(24671144-24671262)
chr1 (81-180)||(19431391-19431488)
chr1 (111-185)||(27032330-27032402)
chr1 (32-185)||(48843364-48843504)
chr1 (81-134)||(44448499-44448552)
chr1 (87-166)||(5398029-5398106)
chr1 (82-138)||(49177428-49177483)
chr1 (111-181)||(51748544-51748612)
chr1 (92-142)||(15106237-15106287)
chr1 (87-140)||(46325597-46325650)
chr1 (81-128)||(4213841-4213888)
chr1 (81-140)||(11872189-11872248)
chr1 (77-140)||(17923857-17923920)
chr1 (87-134)||(46325450-46325497)
chr1 (112-142)||(46284444-46284474)
chr1 (65-102)||(27032295-27032332)
chr1 (80-129)||(34430053-34430102)
chr1 (87-136)||(49315741-49315790)
[»] chr7 (17 HSPs)
chr7 (67-185)||(32279281-32279395)
chr7 (62-168)||(2628418-2628522)
chr7 (30-178)||(46425278-46425413)
chr7 (64-182)||(9488753-9488870)
chr7 (63-179)||(18867921-18868024)
chr7 (111-178)||(16876747-16876812)
chr7 (111-178)||(23185933-23185998)
chr7 (30-160)||(34328118-34328235)
chr7 (64-140)||(40591046-40591122)
chr7 (76-134)||(37685186-37685244)
chr7 (80-134)||(685000-685054)
chr7 (78-131)||(11369053-11369106)
chr7 (81-126)||(33957482-33957527)
chr7 (81-166)||(42971644-42971727)
chr7 (81-136)||(19495145-19495200)
chr7 (91-134)||(43368497-43368540)
chr7 (81-134)||(32204779-32204832)
[»] chr6 (17 HSPs)
chr6 (30-178)||(9928256-9928391)
chr6 (62-178)||(22469694-22469797)
chr6 (69-182)||(9549359-9549472)
chr6 (81-134)||(457686-457739)
chr6 (81-140)||(8585733-8585792)
chr6 (81-140)||(24226089-24226148)
chr6 (81-132)||(26847179-26847230)
chr6 (65-140)||(28963575-28963650)
chr6 (111-178)||(7506627-7506692)
chr6 (81-140)||(512774-512833)
chr6 (81-138)||(167183-167240)
chr6 (81-134)||(6793531-6793584)
chr6 (81-138)||(28729980-28730037)
chr6 (76-140)||(3037370-3037434)
chr6 (83-140)||(6139349-6139406)
chr6 (65-102)||(29393747-29393784)
chr6 (62-102)||(31743916-31743956)
[»] scaffold0085 (1 HSPs)
scaffold0085 (81-134)||(31608-31661)
[»] scaffold0176 (2 HSPs)
scaffold0176 (111-185)||(15079-15151)
scaffold0176 (62-102)||(15149-15189)


Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 23396039 - 23395921
Alignment:
Q  65 ttggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagata 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||  | |||||||||||||||||||||    
T  23396039 ttggtgacataggttcattttagatgagagagaatgataaatgaatgattaaaataaattatttagatgatagag--aatgagttgttaagagagagata 23395942  T
Q  165 gacataaagataccaatgaca 185  Q
    |||| |||  |||||||||||    
T  23395941 gacacaaatgtaccaatgaca 23395921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 16 - 185
Target Start/End: Original strand, 6752010 - 6752177
Alignment:
Q  16 agatagaatccactgggaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggatta 115  Q
    ||||||| | ||| ||||||||||| ||||||||||       ||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||    
T  6752010 agatagattacacagggaaatacttgggtgccatagttttttggtaccattgatgacataagttcattttagatgagagagaatgataaatgaatgatta 6752109  T
Q  116 aaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagataccaatgaca 185  Q
    ||||||||||||||||||  ||||| | | ||||||||||||||||||||||| | || || ||||||||    
T  6752110 aaataaattatttagatg--agagaaagtaagttgttaagagagagatagacacagaggtatcaatgaca 6752177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 11226252 - 11226126
Alignment:
Q  65 ttggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagata 164  Q
    |||||||||||||||||||||| ||||||||||||||  |||||| |||||||||||||||||||||||  ||||| | |||||||||||||||||||||    
T  11226252 ttggtgacataggttcattttaaatgagagagaatgacgaatgaatgattaaaataaattatttagatg--agagagaatgagttgttaagagagagata 11226155  T
Q  165 gacataaagataccaatgacaaccaagtg 193  Q
    |||| |||| |||||||| || |||||||    
T  11226154 gacacaaaggtaccaatggcacccaagtg 11226126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 41069655 - 41069759
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagag 161  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||  ||||| | ||| ||||||||||| ||    
T  41069655 ccattggtgacataggttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatg--agagagaatgaattgttaagagacag 41069752  T
Q  162 atagaca 168  Q
    |||||||    
T  41069753 atagaca 41069759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 30 - 182
Target Start/End: Complemental strand, 31750603 - 31750455
Alignment:
Q  30 gggaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattattta 129  Q
    ||||||||||| ||||||||||       || ||||||||||||||  |||||||||||| | |||||||||| |||||| ||||||||||||  |||||    
T  31750603 gggaaatacttaggtgccatagtttgttggtgccattggtgacatatattcattttagatcacagagaatgatgaatgaatgattaaaataaa--attta 31750506  T
Q  130 gatgaaagagatactgagttgttaagagagagatagacataaagataccaatg 182  Q
    ||||  ||||| | ||| ||||||||||||||||||||| |||| || |||||    
T  31750505 gatg--agagaaaatgaattgttaagagagagatagacacaaaggtatcaatg 31750455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 39729080 - 39729017
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||    
T  39729080 gttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatgagagaga 39729017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 165
Target Start/End: Original strand, 32832589 - 32832676
Alignment:
Q  76 ggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagatag 165  Q
    ||||||||||||||||||||||||| |  ||||| |||||||||||||||||||||||  ||||| | ||| | ||||||||||||||||    
T  32832589 ggttcattttagatgagagagaatgttggatgaatgattaaaataaattatttagatg--agagagaatgaatggttaagagagagatag 32832676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 19037039 - 19037128
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagag 161  Q
    |||||||||||||||||||||||||||||| |||||||           |||||||||||||||||||||||  ||||| | ||||||||||||||||||    
T  19037039 ccattggtgacataggttcattttagatgaaagagaat-----------gattaaaataaattatttagatg--agagagaatgagttgttaagagagag 19037125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 3496809 - 3496874
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagatacc 178  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||||||||||| |||| ||||    
T  3496809 gattaaaataaattatttagatgagagagaa--tgagttgttaagagagagatagacacaaagttacc 3496874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 28640141 - 28640200
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| |||||||    
T  28640141 attttagatgaaagagaatgatagatgaatgattaaaataaattattttgataaaagaga 28640200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 40204728 - 40204787
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||| |||||||||||||||| |||||  ||||||||||||||||||| |||||||||    
T  40204728 attttacatgagagagaatgatagatgaattattaaaataaattatttaggtgaaagaga 40204787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 173
Target Start/End: Complemental strand, 15141977 - 15141880
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    ||||||||||||||||||||||||||||| |||||||           |||||||||||||||||||||||  ||||| | | ||||||||| |||||||    
T  15141977 cattggtgacataggttcattttagatgaaagagaat-----------gattaaaataaattatttagatg--agagagaataagttgttaaaagagaga 15141891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Original strand, 36562752 - 36562800
Alignment:
Q  92 gagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||| |||||| || ||||||||||||||||||||| |||||    
T  36562752 gagagaatgatgaatgaatgagtaaaataaattatttagatgagagaga 36562800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 13477690 - 13477749
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||| ||| |||||||||||| |||||| ||||||||||| ||||||| |||| |||||    
T  13477690 attttggataagagagaatgatgaatgaatgattaaaataatttatttaaatgagagaga 13477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 38529885 - 38529936
Alignment:
Q  85 tagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaa 136  Q
    ||||||||||| ||| ||  ||||| ||||||||||||||||||||||||||    
T  38529885 tagatgagagataataatttatgaatgattaaaataaattatttagatgaaa 38529936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 8209369 - 8209324
Alignment:
Q  95 agaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||| |||||||| |||||||||||||||||| ||||| |||||    
T  8209369 agaatggtaaatgaatgattaaaataaattattttgatgagagaga 8209324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 33433419 - 33433472
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||| ||| ||||||||  || |||||| ||||||||||||||||||||||||    
T  33433419 atttttgataagagagaaaaatgaatgaatgattaaaataaattatttagatga 33433472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 34928936 - 34928777
Alignment:
Q  29 tgggaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattattt 128  Q
    |||||||||||| ||||||||||       ||  ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34928936 tgggaaatacttgggtgccatagttttttagtgtcattgatgacatatgttcattttagatgagagagaatgataaatgaatgattaaaataaattattt 34928837  T
Q  129 agatgaaagagatactgagttgttaagagagagatagacataaagataccaatgacaaccaa 190  Q
    |||||||||||| | | |||||||||||  |||||||| | |||| ||||||||||| ||||    
T  34928836 agatgaaagagagaataagttgttaaga--gagatagatacaaaggtaccaatgacatccaa 34928777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 14151925 - 14151993
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttaga 131  Q
    ||||| ||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||    
T  14151925 cattgatgacataggttcattttagatgagagataataatgaatgaatgattaaaataaattatttaga 14151993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 22658934 - 22658862
Alignment:
Q  64 attggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaa 136  Q
    |||||| ||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||| ||||||    
T  22658934 attggtaacataagttcattttagatgaaagagaatgatgaatgaatgattaaaataaattatttaaatgaaa 22658862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 19824674 - 19824615
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||||| |||||    
T  19824674 attttagatgagagagaatgttagatgaatgattaaaataaattatttagatgagagaga 19824615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 37515593 - 37515663
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagataccaatga 183  Q
    |||||||||||||||||||||||| |||  || ||||||||||||||||||||||||| |||| |||| ||||    
T  37515593 gattaaaataaattatttagatgataga--taatgagttgttaagagagagatagacacaaagttacctatga 37515663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 140
Target Start/End: Original strand, 33922867 - 33922922
Alignment:
Q  85 tagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||    
T  33922867 tagatgagagagaatgataaatgaatgattaaaataaataatgtagatgagagaga 33922922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 14281810 - 14281862
Alignment:
Q  81 attttagatgagagagaatgataaatgaa-ggattaaaataaattatttagat 132  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||||||||    
T  14281810 attttagatgagagagaatgatagatgaatgtattaaaataaattatttagat 14281862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 18623597 - 18623648
Alignment:
Q  91 agagagaatgataaatgaaggattaaaataaattatttagatgaaagagata 142  Q
    ||||||||||||| ||||| |||||||||||||||||||||| | |||||||    
T  18623597 agagagaatgatagatgaatgattaaaataaattatttagataagagagata 18623648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 27554873 - 27554977
Alignment:
Q  30 gggaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattattta 129  Q
    ||||||||||||||||||||||        | |||||| ||| ||| ||| ||||||||||||||| |||||| ||| ||  ||||||||| ||||||||    
T  27554873 gggaaatactttggtgccatagttttttactgccattgatgatataagtttattttagatgagagaaaatgatgaataaataattaaaatagattattta 27554972  T
Q  130 gatga 134  Q
    |||||    
T  27554973 gatga 27554977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 33953218 - 33953159
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||||||||||| |  |||||  ||||||||||||||||||||||| |||||    
T  33953218 attttagatgagagagaatggtggatgaataattaaaataaattatttagatgagagaga 33953159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 22029851 - 22029904
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||||||||||||||| |  ||||| |||||||||||||||||| |||||    
T  22029851 attttagatgagagagaatgttggatgaatgattaaaataaattatttggatga 22029904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 9956694 - 9956638
Alignment:
Q  84 ttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||  |||||||||||  |||||||||||||||||| ||||| |||||    
T  9956694 ttagatgagagaagatgataaatgagtgattaaaataaattattttgatgagagaga 9956638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 3622203 - 3622256
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||||||| |||||||||| | ||  |||||||||||||||||| |||||    
T  3622203 attttagatgagtgagaatgatatacgagtgattaaaataaattattttgatga 3622256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 127
Target Start/End: Complemental strand, 14139469 - 14139407
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatt 127  Q
    ||||| ||| ||||||| |||||||||||||||  || |||||| || |||||||||||||||||    
T  14139469 cattgatgatataggtttattttagatgagaga--ataataaataaatgattaaaataaattatt 14139407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 99
Target Start/End: Complemental strand, 22473630 - 22473597
Alignment:
Q  66 tggtgacataggttcattttagatgagagagaat 99  Q
    |||||||||| |||||||||||||||||||||||    
T  22473630 tggtgacatatgttcattttagatgagagagaat 22473597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 42321148 - 42321091
Alignment:
Q  83 tttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||| ||||||||||||| || ||||| | |||||||| ||||||||||||| |||||    
T  42321148 tttatatgagagagaatgttagatgaatgtttaaaatatattatttagatgagagaga 42321091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 22653571 - 22653519
Alignment:
Q  80 cattttagatgagagagaatgataaatgaaggattaaaataaattatttagat 132  Q
    |||||||||||||| ||||| ||  ||||| |||||||||| |||||||||||    
T  22653571 cattttagatgagaaagaataatggatgaatgattaaaatagattatttagat 22653519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 6e-36; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 63 - 182
Target Start/End: Complemental strand, 10688716 - 10688599
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    ||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||  ||||| | |||||||||||||||||||    
T  10688716 cattgatgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttagatg--agagagaatgagttgttaagagagaga 10688619  T
Q  163 tagacataaagataccaatg 182  Q
    |||||| |||| ||||||||    
T  10688618 tagacacaaaggtaccaatg 10688599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 47548945 - 47548873
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||| |||||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||||||    
T  47548945 ccattggtaacataggttcattttagatgagagagaatgttgaatggatgattaaaataaattatttagatga 47548873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 4037271 - 4037136
Alignment:
Q  30 gggaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattattta 129  Q
    ||||||||||| ||||||||||       || |||||||||||||||||||||||||||||| ||||||||||           ||||||||||||||||    
T  4037271 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat-----------taaaataaattattta 4037183  T
Q  130 gatgaaagagatactgagttgttaagagagagatagacataaagatacc 178  Q
    ||||| |||||   ||||||||||||||||||||||||| |||| ||||    
T  4037182 gatgagagagaa--tgagttgttaagagagagatagacacaaagttacc 4037136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 39485467 - 39485554
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagata 164  Q
    |||||||||||||||||||||| | |  ||||| |||||||||||||||||||||||| ||||| | ||| | ||| |||||||||||    
T  39485467 gttcattttagatgagagagaaggttggatgaatgattaaaataaattatttagatgagagagagaatgaatggtttagagagagata 39485554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 49279549 - 49279477
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagataccaatgaca 185  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||||||||||| |||| |||| ||||||    
T  49279549 gattaaaataaattatttagatgagagagaa--tgagttgttaagagagagatagacacaaagttacctatgaca 49279477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 50700121 - 50700045
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||||| |||||||||||||||  ||||||||| ||| || ||||||||||||||||||||| || |||||    
T  50700121 ccattggtgacataagttcattttagatga--gagaatgatgaataaatgattaaaataaattatttagacgagagaga 50700045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 11233566 - 11233501
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagatacc 178  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||||||||||| |||| ||||    
T  11233566 gattaaaataaattatttagatgagagagaa--tgagttgttaagagagagatagacacaaagttacc 11233501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 46348375 - 46348452
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||| ||| || ||||||||||||||||||||||||||| ||||||  ||||| ||||| |||||| |||| |||||    
T  46348375 cattgatgatattggttcattttagatgagagagaatgatgaatgaattattaagataaactatttaaatgagagaga 46348452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 178
Target Start/End: Complemental strand, 39973087 - 39972987
Alignment:
Q  65 ttggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagata 164  Q
    ||||||| ||||||||||||||||||| |||||||           |||||||||||||||||| ||||  ||||| | |||||||||||||||||||||    
T  39973087 ttggtgatataggttcattttagatgaaagagaat-----------gattaaaataaattattttgatg--agagagaatgagttgttaagagagagata 39973001  T
Q  165 gacataaagatacc 178  Q
    |||| |||| ||||    
T  39973000 gacacaaagttacc 39972987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 34305877 - 34305819
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagag 139  Q
    ||||||||||||||||||||||| ||||  |||||||||| ||||||| ||||| ||||    
T  34305877 attttagatgagagagaatgatagatgagtgattaaaatatattattttgatgagagag 34305819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 39350775 - 39350815
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgat 102  Q
    ||||||||| |||||||||||||||||||| ||||||||||    
T  39350775 ccattggtgccataggttcattttagatgaaagagaatgat 39350815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 39994251 - 39994198
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagataga 166  Q
    |||||||||||||||||||||||  ||||| | ||||||||||| |||||||||||    
T  39994251 gattaaaataaattatttagatg--agagagaatgagttgttaaaagagagataga 39994198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 132187 - 132151
Alignment:
Q  86 agatgagagagaatgataaatgaaggattaaaataaa 122  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  132187 agatgagagagaatgatgaatgaatgattaaaataaa 132151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 42466959 - 42467015
Alignment:
Q  82 ttttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaaga 138  Q
    ||||| |||| | |||||||| ||||||  |||||||||||||||||||| ||||||    
T  42466959 ttttacatgaaaaagaatgatgaatgaataattaaaataaattatttagacgaaaga 42467015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 4834954 - 4835056
Alignment:
Q  64 attggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagat 163  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||  | ||||||||||||||| ||||    
T  4834954 attggtgacataggttcattttagatgagagagaatgatgaatgaatgattaaaataaattatttaggtgaaagag--aatgagttgttaagagaaagat 4835051  T
Q  164 agaca 168  Q
    |||||    
T  4835052 agaca 4835056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 20896187 - 20896247
Alignment:
Q  80 cattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||    
T  20896187 cattttagatgagagataatgatatatgaatgattaaaataaattatttagatgagagaga 20896247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 35793263 - 35793178
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagata 164  Q
    |||||||| ||||||| || ||||| |||||||  |||||||||||||||||| |||  ||||||| ||||| |||||||||||||||    
T  35793263 gttcatttgagatgagtgacaatgaaaaatgaataattaaaataaattatttaaatg--agagataatgagtagttaagagagagata 35793178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 44132874 - 44132933
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||| |||||    
T  44132874 attttagatgagagataatgatagatgaatgattaaaataaattattttgatgagagaga 44132933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 183
Target Start/End: Original strand, 33938623 - 33938693
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagataccaatga 183  Q
    |||||||||||||||||||||||  ||||| | ||| ||||||||||||||||||||| |||| |||| ||||    
T  33938623 gattaaaataaattatttagatg--agagagaatgaattgttaagagagagatagacacaaagttacctatga 33938693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 1898098 - 1898157
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||||||||||||| || |  |||||||||||||||||| ||| |||||||    
T  1898098 attttagatgagagagaatgatatataactgattaaaataaattattttgataaaagaga 1898157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 22786639 - 22786576
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||||| | |||||||||||| ||  |||||| ||||||||||| ||||||||||    
T  22786639 gttcattttagatgaaaaagaatgataaataaataattaaagtaaattatttaaatgaaagaga 22786576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 168
Target Start/End: Original strand, 41474302 - 41474364
Alignment:
Q  104 aatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagaca 168  Q
    |||||| ||||||||||||||||||| ||  |||||||| | ||||||||||||||| |||||||    
T  41474302 aatgaatgattaaaataaattatttaaat--aagagataataagttgttaagagagaaatagaca 41474364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 33445807 - 33445858
Alignment:
Q  82 ttttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||||||||| |||||||||||| ||| |||| |||||||||||||||||||    
T  33445807 ttttagatgagtgagaatgataaaagaatgatt-aaataaattatttagatga 33445858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 16499803 - 16499842
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgat 102  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  16499803 cattggtgatataggttcattttatatgagagagaatgat 16499842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 16508728 - 16508767
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgat 102  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  16508728 cattggtgatataggttcattttatatgagagagaatgat 16508767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 12964403 - 12964361
Alignment:
Q  98 atgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||| ||||| |||||||||||||||||| |||||||||||    
T  12964403 atgatatatgaatgattaaaataaattattttgatgaaagaga 12964361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 35910668 - 35910617
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||||||||||||||  ||||||||||| ||||||||||||| |||| |||||    
T  35910668 attttagatgagagag--tgataaatgaatgattaaaataaatcattttgatga 35910617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 6261158 - 6261081
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||  || |||||||||||||| |||||  |  |||||  ||| ||||||||||||||||||| |||||    
T  6261158 cattggtgacattagtacattttagatgagaaagaatagttgatgaataattcaaataaattatttagatgagagaga 6261081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 10968543 - 10968591
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattattta 129  Q
    ||||||||||||||| |||  || ||||| |||||||||||||||||||    
T  10968543 attttagatgagagaaaatattagatgaaagattaaaataaattattta 10968591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 44077744 - 44077796
Alignment:
Q  80 cattttagatgagagagaatgataaatgaaggattaaaataaattatttagat 132  Q
    |||||||||||| ||||| |||| ||| ||  |||||||||||||||||||||    
T  44077744 cattttagatgaaagagagtgatgaataaataattaaaataaattatttagat 44077796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 29544144 - 29544253
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagag 161  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||  | ||||||||||| ||||||    
T  29544144 ccattggtgacatatgttcattttagatgagagaaaatgataaatgaatgattaaaataaattatttagatgatagag--aatgagttgttaatagagag 29544241  T
Q  162 atagacataaag 173  Q
    ||||||| ||||    
T  29544242 atagacacaaag 29544253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 46079322 - 46079426
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagag 161  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||  ||||| | ||||||||||||||| ||    
T  46079322 ccattgatgacataggttcattttagatgagagagaatgatcaatgaatgattaaaataaattatttagatg--agagagaatgagttgttaagagacag 46079419  T
Q  162 atagaca 168  Q
    |||||||    
T  46079420 atagaca 46079426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 52673181 - 52673301
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||| ||||| |||||   ||  ||| |||||||||||    
T  52673181 cattggtgacataggttcattttagatgagagagaatgatgaatgaataattaaaataaattattttgatgagagagaatatg--ttggtaagagagaga 52673278  T
Q  163 tagacataaagataccaatgaca 185  Q
    |||||| ||| ||| ||||||||    
T  52673279 tagacacaaaaatatcaatgaca 52673301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 82 - 165
Target Start/End: Original strand, 29724351 - 29724432
Alignment:
Q  82 ttttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagatag 165  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||||||  |||||||| ||||| ||||||||| ||||||    
T  29724351 ttttagatgatagagaataataaatgaatgattaaaataaattatttagat--aagagataatgagtggttaagagaaagatag 29724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 29693287 - 29693184
Alignment:
Q  78 ttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagatac 177  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||| ||  |||||||| |  |||||||  ||||||||||||| |||  |||    
T  29693287 ttcattttagatgagagagaatgataaataaataattaaaataaattatttaaat--aagagataatatgttgtta--agagagatagacacaaaagtac 29693192  T
Q  178 caatgaca 185  Q
    ||||||||    
T  29693191 caatgaca 29693184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 53406486 - 53406575
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagaca 168  Q
    ||||||||||||||| ||| |||||| ||| ||  |||||||||||||||||||||  |||||| | ||| |||||||||||||||||||||    
T  53406486 gttcattttagatgaaagaaaatgatgaataaataattaaaataaattatttagat--aagagaaaatgaattgttaagagagagatagaca 53406575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 44015395 - 44015466
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||||||||||  ||  ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  44015395 cattggtgacattagtgtattttagatgagaaagaatgatagatgaatgattaaaataaattatttagatga 44015466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 5052179 - 5052119
Alignment:
Q  80 cattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||||| ||||| |||||    
T  5052179 cattttaaatgagagagaatgataaataaatgattaaaataaattattttgatgagagaga 5052119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 19473052 - 19473107
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaa 136  Q
    |||||||| |||||| ||||||| ||||| ||||||||||||||||||||||||||    
T  19473052 attttagaggagagaaaatgatacatgaatgattaaaataaattatttagatgaaa 19473107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 83 - 141
Target Start/End: Original strand, 31455897 - 31455955
Alignment:
Q  83 tttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagat 141  Q
    ||||||||| |||||||||  |||||| |||||||||||||||||||||||| ||||||    
T  31455897 tttagatgaaagagaatgaagaatgaatgattaaaataaattatttagatgagagagat 31455955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 50041816 - 50041874
Alignment:
Q  82 ttttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||| ||||| |||||    
T  50041816 ttttagatgagagataatgatagatgaatgattaaaataaattattttgatgagagaga 50041874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 50049038 - 50049096
Alignment:
Q  82 ttttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||| ||||| |||||    
T  50049038 ttttagatgagagataatgatagatgaatgattaaaataaattattttgatgagagaga 50049096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 23332199 - 23332136
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||||||||||||||| || ||||| ||||||||||  ||||||| |||| |||||    
T  23332199 gttcattttagatgagagagaatgttagatgaatgattaaaatatgttatttaaatgagagaga 23332136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 140
Target Start/End: Original strand, 40202245 - 40202308
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||| ||| | |||| |||||| ||||||  |||||||||||||||||||||||||||||    
T  40202245 gttcatttcagaggtgagataatgatgaatgaattattaaaataaattatttagatgaaagaga 40202308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 52198438 - 52198385
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||||||||||||| ||||||| || || |||||||||||||||||| |||||    
T  52198438 attttagatgagagataatgatagataaatgattaaaataaattattttgatga 52198385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 36498600 - 36498652
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatg 133  Q
    |||||||||||||||| |||||| ||||  |||||||||||||||||| ||||    
T  36498600 attttagatgagagaggatgatagatgagtgattaaaataaattattttgatg 36498652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 1208706 - 1208745
Alignment:
Q  92 gagagaatgataaatgaaggattaaaataaattatttaga 131  Q
    ||||||||||| |||||| |||||||||||||||||||||    
T  1208706 gagagaatgatgaatgaatgattaaaataaattatttaga 1208745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 9116228 - 9116267
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgat 102  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  9116228 cattgatgacataggttcattttagatgaaagagaatgat 9116267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 31203410 - 31203355
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaa 136  Q
    ||||||||||| ||||| ||||||||||   ||||||||||||||||| |||||||    
T  31203410 attttagatgaaagagagtgataaatgatcaattaaaataaattatttcgatgaaa 31203355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 11077844 - 11077921
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||| |||  ||||||||| |||| |||||||||||  ||||| ||||||||  | |||||||||||| |||||    
T  11077844 cattggtggcattagttcattttggatgggagagaatgatctatgaatgattaaaaatagttatttagatgagagaga 11077921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 30643603 - 30643652
Alignment:
Q  91 agagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||| ||||||  ||||| |||||||||||||||||||||||| |||||    
T  30643603 agagataatgatggatgaatgattaaaataaattatttagatgagagaga 30643652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 51853560 - 51853503
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||||  ||||||||||||| | ||||||  |||||||||| ||||||||||||    
T  51853560 gttcattttttatgagagagaatgttgaatgaataattaaaataacttatttagatga 51853503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 53176929 - 53176876
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||||||||| |||  || || |||||| ||||||||||||||||||||||||    
T  53176929 attttagatgacagaagataatgaatgaatgattaaaataaattatttagatga 53176876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 2e-32; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 48914968 - 48915071
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||  ||||| | |||||||||||||||||||    
T  48914968 cattggtgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattattttgatg--agagagaatgagttgttaagagagaga 48915065  T
Q  163 tagaca 168  Q
    ||||||    
T  48915066 tagaca 48915071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 48915359 - 48915462
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||  ||||| | |||||||||||||||||||    
T  48915359 cattggtgacataagttcattttagatgagagagaatgatgaatgaatgattaaaataaattattttgatg--agagagaatgagttgttaagagagaga 48915456  T
Q  163 tagaca 168  Q
    ||||||    
T  48915457 tagaca 48915462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 185
Target Start/End: Original strand, 19456293 - 19456413
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    |||||||||||||| ||||||||||||||||||||||||| |||  | |||||||||||||||||||||||  ||||| | ||| ||||||||| |||||    
T  19456293 cattggtgacatagattcattttagatgagagagaatgatgaatagatgattaaaataaattatttagatg--agagagaatgaattgttaagaaagaga 19456390  T
Q  163 tagacataaagataccaatgaca 185  Q
    |||||| |||| | |||||||||    
T  19456391 tagacacaaaggtgccaatgaca 19456413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 48915160 - 48915261
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||| |||||||||||||||||| ||||  ||||| | |||||||||||||||||||    
T  48915160 cattggtgacataggttcattttagat--gagagaatgatgaatgaatgattaaaataaattattttgatg--agagagaatgagttgttaagagagaga 48915255  T
Q  163 tagaca 168  Q
    ||||||    
T  48915256 tagaca 48915261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 26478669 - 26478550
Alignment:
Q  64 attggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagat 163  Q
    |||||||||| ||||| |||||||||||||||||||||| ||||||  |||||||||||| ||||| |||||  ||||| ||| ||||||| ||| ||||    
T  26478669 attggtgacaaaggttaattttagatgagagagaatgatgaatgaataattaaaataaatcatttaaatgaa--agataatgaattgttaaaagaaagat 26478572  T
Q  164 agacataaagataccaatgaca 185  Q
    ||||| |||| |||||||||||    
T  26478571 agacacaaaggtaccaatgaca 26478550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 50539711 - 50539819
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    ||||||||||||| |||||||||||| |||||| |||||| |||  | ||||||||||||||||||| || ||||||  | |||||||||||||||||||    
T  50539711 cattggtgacataagttcattttagaagagagataatgatgaatagatgattaaaataaattatttaaataaaagag--aatgagttgttaagagagaga 50539808  T
Q  163 tagacataaag 173  Q
    |||||| ||||    
T  50539809 tagacacaaag 50539819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 3950280 - 3950355
Alignment:
Q  65 ttggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||| ||| |||||||||||||||||||||||  ||||| |||||||||||||||||| |||||||||||    
T  3950280 ttggtgacattggtgcattttagatgagagagaatgatcgatgaatgattaaaataaattattttgatgaaagaga 3950355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 63 - 185
Target Start/End: Complemental strand, 27907800 - 27907691
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    ||||||||||||||||||||||||||||| ||||||||||           ||||||||||||||||||||| |||||   |||||||||||||||||||    
T  27907800 cattggtgacataggttcattttagatgaaagagaatgat-----------taaaataaattatttagatgagagagaa--tgagttgttaagagagaga 27907714  T
Q  163 tagacataaagataccaatgaca 185  Q
    |||||| |||| |||| ||||||    
T  27907713 tagacacaaagttacctatgaca 27907691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 24671262 - 24671144
Alignment:
Q  65 ttggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagata 164  Q
    |||||| ||| | |||||||||||||||||||| |||| |||||| ||||||||||||||||||| |||  ||||| | ||||| ||||||||| ||||     
T  24671262 ttggtgccattgattcattttagatgagagagagtgatgaatgaatgattaaaataaattatttaaatg--agagagaatgagtggttaagagaaagatg 24671165  T
Q  165 gacataaagataccaatgaca 185  Q
    || | |||| || ||||||||    
T  24671164 gaaacaaaggtatcaatgaca 24671144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 19431391 - 19431488
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagataccaa 180  Q
    ||||||||||||| ||||||||  ||||| |||||||||||||||||||||||  ||||| | ||| | ||||||||||| ||||||| ||||| |||||    
T  19431391 attttagatgagacagaatgatggatgaatgattaaaataaattatttagatg--agagagaatgattggttaagagagatatagacacaaagaaaccaa 19431488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 111 - 185
Target Start/End: Original strand, 27032330 - 27032402
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagataccaatgaca 185  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||||||||||| |||| |||| ||||||    
T  27032330 gattaaaataaattatttagatgagagagaa--tgagttgttaagagagagatagacacaaagttacccatgaca 27032402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 185
Target Start/End: Complemental strand, 48843504 - 48843364
Alignment:
Q  32 gaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttaga 131  Q
    ||||||||| ||||||||||       || |||||||||||||||||||||||||||||| |||||||           |||||||||||||||||||||    
T  48843504 gaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaat-----------gattaaaataaattatttaga 48843416  T
Q  132 tgaaagagatactgagttgttaagagagagatagacataaagataccaatgaca 185  Q
    ||  ||||| | ||| ||||||||||||||||||| | |||| |||| ||||||    
T  48843415 tg--agagagaatgaattgttaagagagagatagatacaaagttacctatgaca 48843364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 44448499 - 44448552
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||||| |||||||||||| ||||| ||||||||||||||||||| ||||    
T  44448499 attttagatgggagagaatgatatatgaatgattaaaataaattatttaaatga 44448552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 5398029 - 5398106
Alignment:
Q  87 gatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagataga 166  Q
    |||| ||||||||||| ||||||  ||||||||||| ||||||||||  ||||| | ||||| |||||||||||||||||    
T  5398029 gatgggagagaatgatgaatgaattattaaaataaactatttagatg--agagagaatgagtggttaagagagagataga 5398106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 49177483 - 49177428
Alignment:
Q  82 ttttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaaga 138  Q
    |||||||||||||| |||||| | |||| ||||||||||||||||||||||||||||    
T  49177483 ttttagatgagagaaaatgatga-tgaatgattaaaataaattatttagatgaaaga 49177428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 181
Target Start/End: Complemental strand, 51748612 - 51748544
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagataccaat 181  Q
    |||||||||||||||||||||||  ||||| | ||||||||||| ||| ||||||||| |||| |||||||    
T  51748612 gattaaaataaattatttagatg--agagagaatgagttgttaaaagaaagatagacacaaagttaccaat 51748544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 15106287 - 15106237
Alignment:
Q  92 gagagaatgataaatgaaggattaaaataaattatttagatgaaagagata 142  Q
    |||||||||||| ||||| ||||||||||||||||||| |||| |||||||    
T  15106287 gagagaatgatagatgaatgattaaaataaattatttacatgagagagata 15106237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 46325597 - 46325650
Alignment:
Q  87 gatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||||||| ||||| ||||||||||| |||||| ||||| |||||    
T  46325597 gatgagagagaatgatagatgaatgattaaaataagttattttgatgagagaga 46325650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 4213841 - 4213888
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattattt 128  Q
    |||||||||||||||||| |||| ||||  ||||||||||||||||||    
T  4213841 attttagatgagagagaacgatatatgagtgattaaaataaattattt 4213888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 11872189 - 11872248
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||| |||||||||| | |||| ||||| |||||||||||| ||||| |||||    
T  11872189 attttagatgaaagagaatgatgattgaatgattataataaattattttgatgagagaga 11872248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 77 - 140
Target Start/End: Complemental strand, 17923920 - 17923857
Alignment:
Q  77 gttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||  ||||||||||||| |  |||||  ||||||||||||||||||||||| |||||    
T  17923920 gttcattttttatgagagagaatgttggatgaataattaaaataaattatttagatgagagaga 17923857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 46325497 - 46325450
Alignment:
Q  87 gatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||| |||||||| ||||| |||||||||||||||||| |||||    
T  46325497 gatgagagggaatgatagatgaatgattaaaataaattattttgatga 46325450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 142
Target Start/End: Original strand, 46284444 - 46284474
Alignment:
Q  112 attaaaataaattatttagatgaaagagata 142  Q
    |||||||||||||||||||||||||||||||    
T  46284444 attaaaataaattatttagatgaaagagata 46284474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 27032295 - 27032332
Alignment:
Q  65 ttggtgacataggttcattttagatgagagagaatgat 102  Q
    ||||||||||| |||||||||| |||||||||||||||    
T  27032295 ttggtgacatatgttcattttatatgagagagaatgat 27032332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 34430102 - 34430053
Alignment:
Q  80 cattttagatgagagagaatgataaatgaaggattaaaataaattattta 129  Q
    |||||||||||||| |||| | || ||||| |||||||||||||||||||    
T  34430102 cattttagatgagaaagaaagttagatgaatgattaaaataaattattta 34430053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 49315741 - 49315790
Alignment:
Q  87 gatgagagagaatgataaatgaaggattaaaataaattatttagatgaaa 136  Q
    |||||||||||||| || ||||  |||||||||||||||||| |||||||    
T  49315741 gatgagagagaatggtagatgagtgattaaaataaattattttgatgaaa 49315790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 9e-32; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 32279281 - 32279395
Alignment:
Q  67 ggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagataga 166  Q
    ||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||||||||| |||| ||||    || ||||||||||||||||||||    
T  32279281 ggtgacataggttcattttagatgagagaaaatgatgaatgaataattaaaataaattatttaaatgagagag----tgggttgttaagagagagataga 32279376  T
Q  167 cataaagataccaatgaca 185  Q
    || ||||||||||||||||    
T  32279377 cacaaagataccaatgaca 32279395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 62 - 168
Target Start/End: Original strand, 2628418 - 2628522
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagag 161  Q
    |||||||||||||| |||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||  ||||| | ||||||||||||||||||    
T  2628418 ccattggtgacataagttcattttagatgagagagaatgatgaataaatgattaaaataaactatttagatg--agagagaatgagttgttaagagagag 2628515  T
Q  162 atagaca 168  Q
    |||||||    
T  2628516 atagaca 2628522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 46425278 - 46425413
Alignment:
Q  30 gggaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattattta 129  Q
    ||||||||||| ||||||||||       || |||||||||||||||||||||||||||||| ||||||||||           ||||||||||||||||    
T  46425278 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat-----------taaaataaattattta 46425366  T
Q  130 gatgaaagagatactgagttgttaagagagagatagacataaagatacc 178  Q
    ||||| |||||   ||||||||||||||||||||||||| |||| ||||    
T  46425367 gatgagagagaa--tgagttgttaagagagagatagacacaaagttacc 46425413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 9488753 - 9488870
Alignment:
Q  64 attggtgacataggttcattttagatgagag-agaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    |||| ||||||| |||||||||||||||||| |||||||| |||||| |||||||||||||||||||||   || ||  | |||||||||||||||||||    
T  9488753 attgatgacataagttcattttagatgagaggagaatgatgaatgaatgattaaaataaattatttaga--gaatagggaatgagttgttaagagagaga 9488850  T
Q  163 tagacataaagataccaatg 182  Q
    || ||| |||| || |||||    
T  9488851 tatacacaaaggtatcaatg 9488870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 63 - 179
Target Start/End: Original strand, 18867921 - 18868024
Alignment:
Q  63 cattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagaga 162  Q
    ||||||||||||||||||||||||||||| ||||||||||           ||||||||||||||||||||| |||||   |||||||||||||||||||    
T  18867921 cattggtgacataggttcattttagatgaaagagaatgat-----------taaaataaattatttagatgagagagaa--tgagttgttaagagagaga 18868007  T
Q  163 tagacataaagatacca 179  Q
    |||||| |||| |||||    
T  18868008 tagacacaaagttacca 18868024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 16876747 - 16876812
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagatacc 178  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||||||||||| |||| ||||    
T  16876747 gattaaaataaattatttagatgagagagaa--tgagttgttaagagagagatagacacaaagttacc 16876812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 178
Target Start/End: Original strand, 23185933 - 23185998
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagatacc 178  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||||||||||| |||| ||||    
T  23185933 gattaaaataaattatttagatgagagagaa--tgagttgttaagagagagatagacacaaagttacc 23185998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 34328235 - 34328118
Alignment:
Q  30 gggaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattattta 129  Q
    ||||||||||| ||||||||||       || |||||||||||||||||||||||||||||| |||||||           |||||||||||||||||||    
T  34328235 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaat-----------gattaaaataaattattta 34328147  T
Q  130 gatgaaagagatactgagttgttaagagaga 160  Q
    ||||  ||||| | |||||||||||||||||    
T  34328146 gatg--agagagaatgagttgttaagagaga 34328118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 40591122 - 40591046
Alignment:
Q  64 attggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||||||||||  || |||||||||||| | |||||| || || || ||||||||||||||||||||||||||||||    
T  40591122 attggtgacattagtacattttagatgaaatagaatgttagataaatgattaaaataaattatttagatgaaagaga 40591046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 37685186 - 37685244
Alignment:
Q  76 ggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||||||||||| ||||||||||| |  ||||| ||||||||||||||||||||||||    
T  37685186 ggttcattttagacgagagagaatgttggatgaatgattaaaataaattatttagatga 37685244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 685000 - 685054
Alignment:
Q  80 cattttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||||||||| |||||  || ||||| ||||||||||||||||||||||||    
T  685000 cattttagatgagaaagaatattagatgaaagattaaaataaattatttagatga 685054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 11369053 - 11369106
Alignment:
Q  78 ttcattttagatgagagagaatgataaatgaaggattaaaataaattatttaga 131  Q
    ||||||||||||||||||||||| |  || || |||||||||||||||||||||    
T  11369053 ttcattttagatgagagagaatgttggataaatgattaaaataaattatttaga 11369106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 33957482 - 33957527
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattat 126  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||    
T  33957482 attttagatgagaaagaatgatagatgaatgattaaaataaattat 33957527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 42971644 - 42971727
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagataga 166  Q
    |||||||||||||||||||| |    ||| |||||||||||||||||||||||| ||||| | ||| | |||||||||||||||||    
T  42971644 attttagatgagagagaatgttgggcgaatgattaaaataaattatttagatgagagaga-attga-tggttaagagagagataga 42971727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 19495145 - 19495200
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaa 136  Q
    ||||||||| | | ||||||||||||||| |||||||||| ||| |||||||||||    
T  19495145 attttagataaaaaagaatgataaatgaatgattaaaatatattctttagatgaaa 19495200  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 91 - 134
Target Start/End: Original strand, 43368497 - 43368540
Alignment:
Q  91 agagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||||||||||  ||||| ||||||||||||||||||||||||    
T  43368497 agagagaatgatggatgaatgattaaaataaattatttagatga 43368540  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 32204832 - 32204779
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||||||||||  |||||| || || ||||||||||||||||||| ||||    
T  32204832 attttagatgagagaagatgatagataaatgattaaaataaattatttatatga 32204779  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 178
Target Start/End: Complemental strand, 9928391 - 9928256
Alignment:
Q  30 gggaaatactttggtgccatagnnnnnnngtaccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattattta 129  Q
    ||||||||||| ||||||||||       || |||||||||||||||||||||||||||||| ||||||||||           ||||||||||||||||    
T  9928391 gggaaatacttgggtgccatagttttttggtgccattggtgacataggttcattttagatgaaagagaatgat-----------taaaataaattattta 9928303  T
Q  130 gatgaaagagatactgagttgttaagagagagatagacataaagatacc 178  Q
    ||||| |||||   ||||||||||||||||||||||||| |||| ||||    
T  9928302 gatgagagagaa--tgagttgttaagagagagatagacacaaagttacc 9928256  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 178
Target Start/End: Complemental strand, 22469797 - 22469694
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagag 161  Q
    |||||||||||||||||||||||||||||| ||||||||||           ||||||||||||||||||||  ||||| | ||||||||||||| ||||    
T  22469797 ccattggtgacataggttcattttagatgaaagagaatgat-----------taaaataaattatttagatg--agagagaatgagttgttaagaaagag 22469711  T
Q  162 atagacataaagatacc 178  Q
    ||||||| |||| ||||    
T  22469710 atagacacaaagttacc 22469694  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 9549472 - 9549359
Alignment:
Q  69 tgacataggttcattttagatgagagagaatg----ataaatgaaggattaaaataaattatttagatgaaagagatactgagttgttaagagagagata 164  Q
    |||||||||||| |||||||||||||||||||    || |||||| ||||||||||||||||||| ||   ||||| | ||||||||||  |||||||||    
T  9549472 tgacataggttcgttttagatgagagagaatggtgaatgaatgaatgattaaaataaattatttaaat--tagagagaatgagttgtta--agagagata 9549377  T
Q  165 gacataaagataccaatg 182  Q
     ||| |||||||||||||    
T  9549376 aacacaaagataccaatg 9549359  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 457739 - 457686
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    ||||||||||||||||||||||  ||||| ||||||||||||||||||||||||    
T  457739 attttagatgagagagaatgatggatgaatgattaaaataaattatttagatga 457686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 8585792 - 8585733
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||| ||||||||||  ||||| ||||||||||||| ||||||||||||||||    
T  8585792 attttagatgaaagagaatgatggatgaatgattaaaataaatgatttagatgaaagaga 8585733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 24226148 - 24226089
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||| ||||| |||||    
T  24226148 attttagatgagagaaaatgatagatgaatgattaaaataaattattttgatgacagaga 24226089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 26847230 - 26847179
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagat 132  Q
    ||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  26847230 attttagatgagagagaatgatagatgaatgagtaaaataaattatttagat 26847179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 65 - 140
Target Start/End: Original strand, 28963575 - 28963650
Alignment:
Q  65 ttggtgacataggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||  || ||||||||||||||||||||||  |||||| ||||||||||| |||||| ||||| |||||    
T  28963575 ttggtgacattagtgcattttagatgagagagaatgaagaatgaatgattaaaataacttattttgatgagagaga 28963650  T

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Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 178
Target Start/End: Complemental strand, 7506692 - 7506627
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagatacc 178  Q
    |||||||||||||||||||||||  ||||| | ||||||||||||||||||||| | |||||| ||||    
T  7506692 gattaaaataaattatttagatg--agagagaatgagttgttaagagagagataaatataaagttacc 7506627  T

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Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 140
Target Start/End: Complemental strand, 512833 - 512774
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||||||||||||||||| ||| ||||  |||||||||||||||||| ||||| |||||    
T  512833 attttagatgagagagaataatagatgagtgattaaaataaattattttgatgagagaga 512774  T

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Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 167183 - 167240
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaaga 138  Q
    ||||||||||||||| |||| | | |||| ||||||||||||||||||| ||||||||    
T  167183 attttagatgagagataatgttgattgaaagattaaaataaattatttaaatgaaaga 167240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 6793584 - 6793531
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||||||||||||| |||| ||||  |||||||||||||||||| |||||    
T  6793584 attttagatgagagagaacgatagatgagtgattaaaataaattattttgatga 6793531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 28729980 - 28730037
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaaga 138  Q
    ||||||||||||||||||||||| || |  | |||||||||||||||| |||||||||    
T  28729980 attttagatgagagagaatgatagatcagtgcttaaaataaattattttgatgaaaga 28730037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 3037370 - 3037434
Alignment:
Q  76 ggttcattttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    ||||| |||| ||||||||| |||| |  ||||| |||||||||||||| |||||||||||||||    
T  3037370 ggttcttttttgatgagagaaaatgttggatgaatgattaaaataaattttttagatgaaagaga 3037434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 140
Target Start/End: Complemental strand, 6139406 - 6139349
Alignment:
Q  83 tttagatgagagagaatgataaatgaaggattaaaataaattatttagatgaaagaga 140  Q
    |||| ||||||||||||| || |  || |||||||||||||||||||||||| |||||    
T  6139406 tttaaatgagagagaatgttagacaaatgattaaaataaattatttagatgagagaga 6139349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 29393784 - 29393747
Alignment:
Q  65 ttggtgacataggttcattttagatgagagagaatgat 102  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  29393784 ttggtgacattggtacattttagatgagagagaatgat 29393747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 31743956 - 31743916
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgat 102  Q
    |||||||| ||||| ||||||||||||||| ||||||||||    
T  31743956 ccattggtaacataagttcattttagatgaaagagaatgat 31743916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 31661 - 31608
Alignment:
Q  81 attttagatgagagagaatgataaatgaaggattaaaataaattatttagatga 134  Q
    |||||||| |||||||||| ||| ||||| ||||||||||||||||||||||||    
T  31661 attttagacgagagagaataatagatgaatgattaaaataaattatttagatga 31608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 15151 - 15079
Alignment:
Q  111 gattaaaataaattatttagatgaaagagatactgagttgttaagagagagatagacataaagataccaatgaca 185  Q
    |||||||||||||||||| ||||| |||||   ||||||||||||| ||||||||||| |||| |||| ||||||    
T  15151 gattaaaataaattattttgatgagagagaa--tgagttgttaagatagagatagacacaaagttacctatgaca 15079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 15189 - 15149
Alignment:
Q  62 ccattggtgacataggttcattttagatgagagagaatgat 102  Q
    |||||||||||||| ||||||||||||||| ||| ||||||    
T  15189 ccattggtgacatatgttcattttagatgaaagataatgat 15149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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