View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_high_4 (Length: 444)
Name: NF9009_high_4
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Original strand, 39246781 - 39247217
Alignment:
| Q |
1 |
ctaattcaaatcaagtttatcacattcacatggcaaacacacaaataactatatttgcgctgataatcttcaccaccttcttgttcatgacattgcaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39246781 |
ctaattcaaatcaagtttatcacattcacatggcaaacacacaaataactatatttgcgctaataatcttcaccaccttcttgttcatgacattgcaagc |
39246880 |
T |
|
| Q |
101 |
tcgtactctccaacgccaccccttcactagagaaaaaagcaatgttgttagtcatcatgtgcttttttacaaattagtttctgatctatcgaagaatata |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39246881 |
tcgtactctccaaccccaccccttcactagagaaaaaagcaatgttgttagtcatcatgtgctttttcacaaattagtttctgatctatcgaagaatata |
39246980 |
T |
|
| Q |
201 |
cataatattggtgatgttgctgatgccactcacgaggatgcaaatcaacatagattatcaccagggggaccagatcctcatcatcatgcaggtccacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39246981 |
cataatattggtgatgttgctgatgccactcacgaggatgcaaatcaacatagattatcaccagggggaccagatcctcatcatcatgcaggtccacaaa |
39247080 |
T |
|
| Q |
301 |
acaagtagctatatatataactctctcgttatataatagaaatattttccaaaaagttgggtagtcaacttatcagttatcagccaccgttgatttgttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39247081 |
acaagtagctatatatataactctctcgttatataatagaaatattttccaaaaagttgggtagtcaacttatcagttatcagccactgttgatttgttg |
39247180 |
T |
|
| Q |
401 |
gtatgtcttaagaacagaactagtatctctgcttctc |
437 |
Q |
| |
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|||||||||||||||||||||||||||| || ||||| |
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| T |
39247181 |
gtatgtcttaagaacagaactagtatctttgtttctc |
39247217 |
T |
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