View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9009_low_1 (Length: 1075)

Name: NF9009_low_1
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9009_low_1
NF9009_low_1
[»] chr8 (6 HSPs)
chr8 (414-1067)||(27801523-27802178)
chr8 (22-374)||(27802219-27802574)
chr8 (19-344)||(27809617-27809946)
chr8 (171-371)||(27798697-27798898)
chr8 (22-248)||(27798911-27799131)
chr8 (431-530)||(27798547-27798645)
[»] chr2 (1 HSPs)
chr2 (815-963)||(21247762-21247911)
[»] chr6 (2 HSPs)
chr6 (780-937)||(7813220-7813378)
chr6 (911-1046)||(17204490-17204623)
[»] scaffold1559 (1 HSPs)
scaffold1559 (1016-1056)||(61-101)
[»] chr5 (1 HSPs)
chr5 (1016-1058)||(19284886-19284928)
[»] scaffold1017 (1 HSPs)
scaffold1017 (1000-1061)||(1675-1736)
[»] chr3 (3 HSPs)
chr3 (742-799)||(12089794-12089851)
chr3 (698-774)||(21100935-21101011)
chr3 (1022-1060)||(25288250-25288288)
[»] scaffold0443 (1 HSPs)
scaffold0443 (1016-1056)||(10295-10335)
[»] scaffold0118 (1 HSPs)
scaffold0118 (1005-1049)||(12093-12137)
[»] chr4 (2 HSPs)
chr4 (1016-1060)||(12351307-12351351)
chr4 (1017-1067)||(15870861-15870911)
[»] chr7 (1 HSPs)
chr7 (969-1067)||(18321282-18321379)


Alignment Details
Target: chr8 (Bit Score: 529; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 414 - 1067
Target Start/End: Complemental strand, 27802178 - 27801523
Alignment:
414 acataagccaacgtatctatttaactaaacaagaggtctaaacaggtgtgcccccaaactcataaccaaattaacaatcatccaataaaataaatgtgtt 513  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
27802178 acataagccaacatatctatttaactaaacaagaagtctaaccaggtgtgcccccaaacccataaccaaattaacaatcatccaataaaataaatgtgtt 27802079  T
514 aaacactaattatgagggtgcaggattgtgctctttaagggcacgaccatgcacccccaaaacaaca--aaacataaatcatggtagcaacatacgcact 611  Q
    ||||||||||||||||||||||  ||||||||||||  |||||||| | ||||||||||||||||||  ||||||||||||||||||||||||||||| |    
27802078 aaacactaattatgagggtgcacaattgtgctctttgggggcacgatcgtgcacccccaaaacaacacaaaacataaatcatggtagcaacatacgcatt 27801979  T
612 ggttatgctcctatatgacacaatcgtgcgttttctacaggggacctctccggactctgttttcgacccaaaactcaccaaattcatccctaaacatcac 711  Q
    | | |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
27801978 gatcatgctcctatatcacacgatcgtgcgttttctacaggggacctctccggactctgttttcgacccaaaactcaccaaattcatccctaaaaatcac 27801879  T
712 tctaaggttatcctaccaattggacattaatttcctcttaatctatccaattacacactcttttcatagttaaattcgcaattcaatttccctagttttg 811  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
27801878 tctaaggttaccctaccgattggacattaatttcctcttaacctatccaattagacactattttcattgttaaattcgcaattcaatttccctagttttg 27801779  T
812 gtttctcacttttaaactcttaagaataacaacaaccataatcatcaccaattcaactctaatttctcaccatggttctcatcataacaacgccataatt 911  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||    
27801778 gtttctcacttttaaactcttaagaataacaacaaccataatcatcattaattcaactctaatttctcaccatggttctcatcataacaacaccataatt 27801679  T
912 atagaattgaaaacaaccgttcaattgggaaaagaaatactctaagatgaaagtttccccacccttacctcaaattctccggagaaatacaacttttggt 1011  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
27801678 atagaattgaaaacaaccgttcaattgggaaaagaaatactctaagatgaaagttttcccacccttacctcaaattctccggagaaatacaacttttggt 27801579  T
1012 ttagttctccttagctagggtttgtctcctttcctctcctcttctctctgcttctc 1067  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| || |||||    
27801578 ttagttctccatagctagggtttgtctcctttcctctcctcttctctttggttctc 27801523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 22 - 374
Target Start/End: Complemental strand, 27802574 - 27802219
Alignment:
22 tgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaatttgatatttt---gaaatatc 118  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
27802574 tgtatttacgcacatacatgataaatatatccatatgcttgagttaggagataagatctcaagatagctaaatgtgaatttgatatttttttgaaatatc 27802475  T
119 acggtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgtacggtgatggtgatt 218  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || ||||||||    
27802474 acggtgtgactacattaaagtcacacactacattgaagctaacatttaaagtttaaaaaactactatgaaaagggctataaatgtactatggtggtgatt 27802375  T
219 catctagaaaccaaacaaacactaagttaaggcttcatcatatactgcttnnnnnnntacctcatcatacatgaaaatatttcaatatcaataataaccg 318  Q
    |||| ||||| |||||||||| |||||||| |||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||||    
27802374 catcgagaaatcaaacaaacattaagttaacgcttcatcatatactgcttaaaaaaatacctcatcatgcatgaaaatatttcaatatcaataataaccg 27802275  T
319 atgcaacttggactaggacaaggatactagagaagtctaaattatgcaaattaaac 374  Q
    |||||||||||||||||||||||||||||||||||  |||| ||| ||||||||||    
27802274 atgcaacttggactaggacaaggatactagagaagattaaagtatacaaattaaac 27802219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 175; E-Value: 1e-93
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 27809946 - 27809617
Alignment:
19 atctgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaatttgatattttgaaatatc 118  Q
    |||||||||||||||||| ||||| |||||||||||||  |||||||| |||||| |||| ||||||| |||||||||||||||| ||||||||||| ||    
27809946 atctgtatttacgcacatccatgaaaaatatatccatactcctgagttgggagatgagatatcaagattgctaaatgtgaatttggtattttgaaatgtc 27809847  T
119 acggtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgtacggtgatggtgatt 218  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
27809846 acggtgtgaccacattaaagtcacagactagattgaagctaacatttgaagcttaaaaaactgctatgaaaagggctataaatgtacggtgatggtgatt 27809747  T
219 catctagaaaccaaacaaacactaagttaaggcttcatcatatactgctt---nnnnnnntacctcatcatacatgaaaatatttcaatatcaat-aata 314  Q
    ||||  |||| |||||||||||| | ||||  |||||||||||| |||||           || |||| |||||||||||||||||||||||||| ||||    
27809746 catcgtgaaagcaaacaaacactgaattaacacttcatcatatattgcttaacaaaaaaacacttcataatacatgaaaatatttcaatatcaataaata 27809647  T
315 accgatgcaacttggactaggacaaggata 344  Q
    ||  || |||||||||||||||||||||||    
27809646 actaatacaacttggactaggacaaggata 27809617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 171 - 371
Target Start/End: Complemental strand, 27798898 - 27798697
Alignment:
171 ttaaaaaactgctatgaaaagggctataaatgtacggtgatggtgattcatctagaaaccaaacaaacactaagttaaggcttcatcatatactgcttnn 270  Q
    |||||||||||||| |||| | |||||||||||||  ||||| ||||| ||| ||||| |||||||||||||||||||  |||||||||||| |||||      
27798898 ttaaaaaactgctaagaaaggagctataaatgtacaatgatgatgatttatcgagaaatcaaacaaacactaagttaacacttcatcatatattgcttaa 27798799  T
271 nnnnntac--ctcatcatacatgaaaatatttcaatatcaataataaccgatgcaacttggactaggacaaggatactagagaagtctaaattatgcaaa 368  Q
          ||  |||||  ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||    
27798798 aaaaaaacacctcattgtacat-aaaacatttcaatatcaataataaccaatgcaacttggactaggacaaggatcctagagaagtctaaagtatacaaa 27798700  T
369 tta 371  Q
    |||    
27798699 tta 27798697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 27799131 - 27798911
Alignment:
22 tgtatttacgcacatacatgataaatatatccatatgcctgagttaggagataagatctcaagatagctaaatgtgaatttgatattttgaaatatcacg 121  Q
    |||||||| ||| |||||||| ||||||||||||||     | || |||||||||||||||| |||  |||||| |||||||||||||||||||||||||    
27799131 tgtatttatgcatatacatgaaaaatatatccatat-----atttgggagataagatctcaaaataattaaatgagaatttgatattttgaaatatcacg 27799037  T
122 gtgtgactacattaaagtcacacactagattgaagctaacatttaaagtttaaaaaactgctatgaaaagggctataaatgtacggtgatggtgattcat 221  Q
    ||||||| |||||| |   |||   |||||||||| |||||||| ||| ||||||| ||||||  ||| |||  ||||||||||  || | |||||||||    
27799036 gtgtgaccacattagatgtacatcgtagattgaagttaacatttgaagcttaaaaatctgctacaaaaggggtaataaatgtac-atggtagtgattcat 27798938  T
222 ctagaaaccaaacaaacactaagttaa 248  Q
    | |||||||||||||||||||||||||    
27798937 caagaaaccaaacaaacactaagttaa 27798911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 431 - 530
Target Start/End: Complemental strand, 27798645 - 27798547
Alignment:
431 tatttaactaaacaagaggtctaaacaggtgtgcccccaaactcataaccaaattaacaatcatccaataaaataaatgtgttaaacactaattatgagg 530  Q
    ||||||||| |||||||||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
27798645 tatttaacttaacaagaggtctaaccaggtgtgcccc-aaacccacaaccaaattaacaatcatccaataaaataattgtgttaaacactaattatgagg 27798547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 815 - 963
Target Start/End: Original strand, 21247762 - 21247911
Alignment:
815 tctcacttttaaactcttaagaataacaacaaccataatcatcaccaattcaactctaatttctcaccatggttctcatcataacaac-gccataattat 913  Q
    ||||||||||||||||| |||||||||||||||  |||| ||||| |||||| |||||||||||||||||| |||||||||||||| |  | |  |||||    
21247762 tctcacttttaaactctcaagaataacaacaacactaataatcacaaattcatctctaatttctcaccatgattctcatcataacagcatcaacgattat 21247861  T
914 agaattgaaaacaaccgttcaattgggaaaagaaatactctaagatgaaa 963  Q
    | |||||||||||||||||||||| |||| |  ||||  |||||||||||    
21247862 aaaattgaaaacaaccgttcaatttggaataataatatcctaagatgaaa 21247911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 8e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 780 - 937
Target Start/End: Original strand, 7813220 - 7813378
Alignment:
780 gttaaattcgcaattcaatttccctagttttggtttctcacttttaaactcttaagaataacaacaaccataatcatcaccaattcaactctaatttctc 879  Q
    |||||| || |||||  ||| ||||||||||| | ||||||||||||| ||| |||||||||||||||| ||||||||| || |||| || |  ||||||    
7813220 gttaaagtctcaattttattaccctagttttgttctctcacttttaaattctcaagaataacaacaaccctaatcatcatcagttcatctatgctttctc 7813319  T
880 accatggttctcatcataacaacgccata-attatagaattgaaaacaaccgttcaatt 937  Q
    |||||| |||||||||||||||| ||| |  ||| || |||||||||||||||||||||    
7813320 accatgattctcatcataacaacaccaaatgttaaaggattgaaaacaaccgttcaatt 7813378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 911 - 1046
Target Start/End: Original strand, 17204490 - 17204623
Alignment:
911 tatagaattgaaaacaaccgttcaattgggaaaagaaatactctaagatgaaagtttccccacccttacctcaaattctccggagaaatacaacttttgg 1010  Q
    ||||||||||||||||||| ||||||| |||  |  ||||| ||||||| ||| |||||||||||||||||  ||||||||  | |||  |||||||||     
17204490 tatagaattgaaaacaaccattcaattcggattaagaataccctaagataaaattttccccacccttacctggaattctcc--aaaaacgcaacttttgt 17204587  T
1011 tttagttctccttagctagggtttgtctcctttcct 1046  Q
     | | |||||||||||||||||||| ||||||||||    
17204588 ctcacttctccttagctagggtttgcctcctttcct 17204623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1559 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1559
Description:

Target: scaffold1559; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1016 - 1056
Target Start/End: Complemental strand, 101 - 61
Alignment:
1016 ttctccttagctagggtttgtctcctttcctctcctcttct 1056  Q
    |||||||||||||||||||| ||||||||||||||||||||    
101 ttctccttagctagggtttgcctcctttcctctcctcttct 61  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1016 - 1058
Target Start/End: Original strand, 19284886 - 19284928
Alignment:
1016 ttctccttagctagggtttgtctcctttcctctcctcttctct 1058  Q
    |||||||||||||||||||||||| ||| ||||||||||||||    
19284886 ttctccttagctagggtttgtctcattttctctcctcttctct 19284928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1017 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1000 - 1061
Target Start/End: Original strand, 1675 - 1736
Alignment:
1000 acaacttttggtttagttctccttagctagggtttgtctcctttcctctcctcttctctctg 1061  Q
    |||||||||| || | |||||||||||||||||||| |||||| |||||| |||| ||||||    
1675 acaacttttgtttcaattctccttagctagggtttgcctccttccctctcttcttttctctg 1736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 742 - 799
Target Start/End: Original strand, 12089794 - 12089851
Alignment:
742 tttcctcttaatctatccaattacacactcttttcatagttaaattcgcaattcaatt 799  Q
    |||||||||||  ||||||||| |||||||||||||| ||||||||  ||||||||||    
12089794 tttcctcttaacttatccaatttcacactcttttcatggttaaattttcaattcaatt 12089851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 698 - 774
Target Start/End: Complemental strand, 21101011 - 21100935
Alignment:
698 tccctaaacatcactctaaggttatcctaccaattggacattaatttcctcttaatctatccaattacacactcttt 774  Q
    ||||||||| ||||| || ||||||||||| | | |||||||||||  ||||||| ||||||||||  |||||||||    
21101011 tccctaaacttcactttagggttatcctactattcggacattaattctctcttaacctatccaattttacactcttt 21100935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1022 - 1060
Target Start/End: Complemental strand, 25288288 - 25288250
Alignment:
1022 ttagctagggtttgtctcctttcctctcctcttctctct 1060  Q
    |||| ||| ||||||||||||||||||||||||||||||    
25288288 ttaggtagagtttgtctcctttcctctcctcttctctct 25288250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1016 - 1056
Target Start/End: Complemental strand, 10335 - 10295
Alignment:
1016 ttctccttagctagggtttgtctcctttcctctcctcttct 1056  Q
    |||||||||| ||||||||| ||||||||||||||||||||    
10335 ttctccttagttagggtttgcctcctttcctctcctcttct 10295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1005 - 1049
Target Start/End: Original strand, 12093 - 12137
Alignment:
1005 ttttggtttagttctccttagctagggtttgtctcctttcctctc 1049  Q
    |||||||| | ||||| ||||||||||||||||||||||||||||    
12093 ttttggttcaattctctttagctagggtttgtctcctttcctctc 12137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 1016 - 1060
Target Start/End: Complemental strand, 12351351 - 12351307
Alignment:
1016 ttctccttagctagggtttgtctcctttcctctcctcttctctct 1060  Q
    |||||||||| ||||||||| ||||||| ||||||||||||||||    
12351351 ttctccttagttagggtttgcctccttttctctcctcttctctct 12351307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 1017 - 1067
Target Start/End: Complemental strand, 15870911 - 15870861
Alignment:
1017 tctccttagctagggtttgtctcctttcctctcctcttctctctgcttctc 1067  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||| |||||    
15870911 tctccttagttagggtttgcctcctttcctctctacttctctctggttctc 15870861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 969 - 1067
Target Start/End: Complemental strand, 18321379 - 18321282
Alignment:
969 cccacccttacctcaaattctccggagaaatacaacttttggtttagttctccttagctagggtttgtctcctttcctctcctcttctctctgcttctc 1067  Q
    |||||||||| | | ||||||||| | ||| ||| |||| |||| | | |||||||||||| ||||| ||||||||||| ||||||| ||||| |||||    
18321379 cccacccttatcgcgaattctccgaa-aaacacagctttaggttcaatactccttagctagagtttgcctcctttcctcccctcttcactctgattctc 18321282  T

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