View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_10 (Length: 527)
Name: NF9009_low_10
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 382
Target Start/End: Original strand, 38366726 - 38367097
Alignment:
| Q |
11 |
aagcagagaaacggtgtcaattagtaatttggtaaggcgtggtttttctggagaatctttggccacattttggccaccttcatcagcaggggttacatgc |
110 |
Q |
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| T |
38366726 |
aagcagagaaacggtgtcaattagtaatttggtaaggcgtggtttttctggagaatctgtggccacattttggccaccttcatcagcaggggttacatgc |
38366825 |
T |
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| Q |
111 |
tggaattggagaattaccaagatgctaaaaacaagaaaaagtttattttccatgctaatgctaattnnnnnnnctaattgttcaaggttagagagatgag |
210 |
Q |
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| T |
38366826 |
tggaattggagaattaccaagatgccaaaaagaagaaaaagtttattttccatgctaatgctaattaaaaaaactaattgttcaaggttagagagatgag |
38366925 |
T |
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| Q |
211 |
aaacttatgctaagttatatggcttgtttggtacttggaagttagcacaacctctccttttaacacgttctactacgtggtgggactttcatcttgcatg |
310 |
Q |
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| T |
38366926 |
aaacttatgctaaggtatatggcttgtttggtacttggaagttagcacaacctttccttttaacacgttctactacgtggtgggactttcatcttgcatg |
38367025 |
T |
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| Q |
311 |
tcggcgatccatatatttgaatatttcaaacactaaggtaagctaaaattatttgtcccaaaatatagagaa |
382 |
Q |
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| T |
38367026 |
tgggctatccatatatttgaatatttcaaacactaaggtaagctaaaattatttgtcccaaaatatagagaa |
38367097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 411 - 527
Target Start/End: Original strand, 38367134 - 38367250
Alignment:
| Q |
411 |
ctgcatgatttaaaatgtcaaaattctagtaaaactttgtttggagaatggtagagattgtctcccaactaggagcttgcaacaagaaaggtatcgtgtt |
510 |
Q |
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| T |
38367134 |
ctgcatgatttaaaatgtcaaaattctagtaaaactttgtttggagaatggtagagattgtctcccaactaggagcttgcaacaagaaaggtatcgtgtt |
38367233 |
T |
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| Q |
511 |
cttaaaattgtacttat |
527 |
Q |
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| T |
38367234 |
cttaaaattgtacttat |
38367250 |
T |
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