View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9009_low_11 (Length: 526)

Name: NF9009_low_11
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9009_low_11
NF9009_low_11
[»] chr3 (21 HSPs)
chr3 (194-508)||(38250817-38251130)
chr3 (12-146)||(48626778-48626912)
chr3 (12-145)||(43905603-43905736)
chr3 (12-135)||(1649601-1649724)
chr3 (80-145)||(28132484-28132549)
chr3 (12-142)||(46904923-46905053)
chr3 (13-144)||(25598833-25598965)
chr3 (12-144)||(7767247-7767379)
chr3 (12-145)||(51147118-51147252)
chr3 (13-120)||(21596516-21596623)
chr3 (80-145)||(6715688-6715753)
chr3 (80-145)||(13401707-13401772)
chr3 (80-144)||(52654873-52654937)
chr3 (12-146)||(27303366-27303502)
chr3 (34-144)||(40151883-40151991)
chr3 (95-144)||(21784531-21784580)
chr3 (80-140)||(46791451-46791509)
chr3 (80-136)||(27729529-27729585)
chr3 (77-144)||(2669706-2669773)
chr3 (94-141)||(20762317-20762364)
chr3 (97-142)||(51939307-51939352)
[»] chr2 (21 HSPs)
chr2 (12-145)||(17117395-17117528)
chr2 (12-144)||(18172694-18172825)
chr2 (12-145)||(18915799-18915936)
chr2 (12-143)||(21746983-21747114)
chr2 (12-141)||(15457682-15457812)
chr2 (20-143)||(38985461-38985584)
chr2 (12-145)||(13997494-13997627)
chr2 (80-148)||(41096286-41096354)
chr2 (20-148)||(2063994-2064122)
chr2 (97-146)||(1226016-1226065)
chr2 (80-145)||(26151497-26151562)
chr2 (20-144)||(39081585-39081708)
chr2 (80-146)||(4856242-4856308)
chr2 (12-134)||(36059666-36059788)
chr2 (80-145)||(19367174-19367239)
chr2 (80-131)||(6530911-6530962)
chr2 (80-145)||(12269675-12269740)
chr2 (80-145)||(13020671-13020736)
chr2 (80-145)||(45619225-45619290)
chr2 (80-132)||(7993881-7993933)
chr2 (82-146)||(13001888-13001952)
[»] chr5 (27 HSPs)
chr5 (11-146)||(3349478-3349613)
chr5 (12-146)||(17513685-17513819)
chr5 (12-145)||(43511799-43511935)
chr5 (12-139)||(42291636-42291762)
chr5 (12-142)||(10591028-10591156)
chr5 (18-145)||(5829568-5829698)
chr5 (12-145)||(29156371-29156503)
chr5 (18-137)||(20976172-20976288)
chr5 (18-144)||(7390152-7390278)
chr5 (95-144)||(13424129-13424178)
chr5 (13-142)||(12661489-12661619)
chr5 (12-66)||(4177381-4177435)
chr5 (12-66)||(17326026-17326080)
chr5 (80-145)||(13474880-13474945)
chr5 (80-145)||(37047032-37047097)
chr5 (97-142)||(41612989-41613034)
chr5 (12-144)||(931550-931682)
chr5 (111-145)||(23069474-23069508)
chr5 (12-135)||(33281855-33281977)
chr5 (96-145)||(19099063-19099112)
chr5 (20-65)||(23069413-23069458)
chr5 (13-66)||(27351531-27351584)
chr5 (95-131)||(13656475-13656511)
chr5 (18-66)||(16061085-16061133)
chr5 (79-143)||(16515754-16515817)
chr5 (83-131)||(26377539-26377587)
chr5 (80-148)||(36718375-36718443)
[»] chr6 (16 HSPs)
chr6 (12-145)||(29308217-29308350)
chr6 (12-139)||(1690473-1690600)
chr6 (12-140)||(1092796-1092924)
chr6 (18-146)||(31861172-31861302)
chr6 (12-146)||(11088752-11088884)
chr6 (80-145)||(2618602-2618667)
chr6 (80-137)||(6361012-6361069)
chr6 (12-142)||(30915115-30915244)
chr6 (12-134)||(350598-350719)
chr6 (80-142)||(29401388-29401450)
chr6 (80-137)||(22503993-22504050)
chr6 (101-145)||(31258321-31258365)
chr6 (20-133)||(3748329-3748443)
chr6 (80-139)||(29149640-29149698)
chr6 (12-65)||(6294435-6294490)
chr6 (77-145)||(11575167-11575235)
[»] chr8 (18 HSPs)
chr8 (12-140)||(34523709-34523836)
chr8 (12-141)||(12531740-12531871)
chr8 (12-145)||(39697695-39697821)
chr8 (80-141)||(3574849-3574910)
chr8 (80-145)||(13585555-13585620)
chr8 (80-138)||(44664360-44664418)
chr8 (80-145)||(3445782-3445847)
chr8 (98-145)||(18420355-18420402)
chr8 (12-66)||(35875080-35875134)
chr8 (74-139)||(23567033-23567097)
chr8 (80-144)||(7858334-7858398)
chr8 (96-140)||(42951549-42951593)
chr8 (12-51)||(36514999-36515038)
chr8 (99-133)||(3471867-3471901)
chr8 (12-66)||(42076290-42076344)
chr8 (94-131)||(18112387-18112424)
chr8 (80-145)||(27074723-27074788)
chr8 (12-65)||(33452940-33452993)
[»] chr7 (22 HSPs)
chr7 (12-144)||(1366190-1366322)
chr7 (31-146)||(26282281-26282398)
chr7 (12-145)||(25610247-25610378)
chr7 (12-144)||(40001462-40001594)
chr7 (12-143)||(36438104-36438234)
chr7 (77-145)||(44875909-44875977)
chr7 (12-145)||(29730839-29730970)
chr7 (12-145)||(29741977-29742108)
chr7 (80-145)||(33910314-33910379)
chr7 (12-140)||(40840999-40841127)
chr7 (12-135)||(773640-773766)
chr7 (12-135)||(32956948-32957072)
chr7 (12-66)||(26633544-26633598)
chr7 (12-133)||(42312191-42312313)
chr7 (80-139)||(4100210-4100269)
chr7 (12-65)||(3799593-3799646)
chr7 (13-66)||(28589974-28590027)
chr7 (13-66)||(30739307-30739360)
chr7 (13-66)||(44002762-44002815)
chr7 (80-145)||(44893777-44893842)
chr7 (80-145)||(42160872-42160937)
chr7 (80-144)||(6379835-6379899)
[»] chr4 (16 HSPs)
chr4 (12-141)||(55134390-55134519)
chr4 (18-145)||(34982412-34982539)
chr4 (13-140)||(21791305-21791430)
chr4 (80-144)||(41038501-41038565)
chr4 (97-145)||(51066061-51066109)
chr4 (97-147)||(53011981-53012031)
chr4 (29-66)||(9925295-9925332)
chr4 (80-141)||(29221377-29221438)
chr4 (80-144)||(11681492-11681556)
chr4 (80-144)||(11689771-11689835)
chr4 (13-140)||(32130544-32130673)
chr4 (12-66)||(24449280-24449334)
chr4 (80-136)||(27632648-27632704)
chr4 (80-131)||(23256847-23256897)
chr4 (79-145)||(9607258-9607324)
chr4 (80-145)||(19661630-19661695)
[»] chr1 (25 HSPs)
chr1 (12-143)||(12971587-12971718)
chr1 (80-145)||(51109848-51109913)
chr1 (20-145)||(25930791-25930918)
chr1 (12-145)||(26486125-26486258)
chr1 (79-145)||(42740354-42740419)
chr1 (12-66)||(50371315-50371369)
chr1 (80-145)||(20905035-20905100)
chr1 (12-145)||(37873506-37873639)
chr1 (99-145)||(6150991-6151037)
chr1 (80-145)||(18127688-18127753)
chr1 (80-141)||(28885424-28885485)
chr1 (80-141)||(48722119-48722180)
chr1 (80-144)||(259-323)
chr1 (101-145)||(20470884-20470928)
chr1 (13-65)||(39080451-39080503)
chr1 (12-51)||(13120710-13120749)
chr1 (12-59)||(15441469-15441516)
chr1 (13-146)||(30004656-30004790)
chr1 (11-65)||(9777595-9777649)
chr1 (12-66)||(27703363-27703417)
chr1 (80-145)||(17487028-17487093)
chr1 (17-66)||(24556988-24557037)
chr1 (80-145)||(29207842-29207907)
chr1 (77-145)||(24183764-24183832)
chr1 (98-138)||(30899932-30899972)
[»] scaffold0034 (1 HSPs)
scaffold0034 (12-135)||(99097-99222)
[»] scaffold0181 (1 HSPs)
scaffold0181 (80-131)||(16897-16948)
[»] scaffold0564 (1 HSPs)
scaffold0564 (80-145)||(1311-1376)
[»] scaffold0035 (1 HSPs)
scaffold0035 (13-66)||(22633-22688)


Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 194 - 508
Target Start/End: Complemental strand, 38251130 - 38250817
Alignment:
Q  194 ctgaagtggccttccttgtgacagaagtaacaacttttcttggtagttgttttgctcttttgtttgttcttgccattgcgacccttcttatctgattttc 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38251130 ctgaagtggccttccttgtgacagaagtaacaacttttcttggtagttgttttgctcttttgtttgttcttgccattgcgacccttcttatctgattttc 38251031  T
Q  294 ctttgacatatagacccttaacatttccacttatctttgtttgatgctccaacctccgtcttcaattagtgtagtcttttcttcatgtacagtttgttcg 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38251030 ctttgacatatagacccttaacatttccacttatctttgtttgatgctccaacctccgtcttcaattagtgtaatcttttcttcatgtacagtttgttcg 38250931  T
Q  394 tcaaagattttgtcgtgtgcaagatttctagtttttagccatacctctgattcactttcaaggcatcttccaaaccttgatgaacaagacgcgccttttt 493  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38250930 tcaaaga-tttgtcgtgtgcaagatttctagtttttagccatacctctgatgcactttcaaggcatcttccaaaccttgatgaacaagaagcgccttttt 38250832  T
Q  494 ctcgaccctttatag 508  Q
    |||||||||||||||    
T  38250831 ctcgaccctttatag 38250817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 48626912 - 48626778
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||||||||||||||||| ||||||| |||||| ||| ||||||       |||| ||||||||||||||  | |||||||||||||||    
T  48626912 gtttcatgtttagaagctcttctgattctaatttttttataaagtttaactacacaaaaaaattgcgtttttattttattgaaggcctattttaaataga 48626813  T
Q  112 gagccgagcctcctatttcatagggacggccctgt 146  Q
    || |||||||||||||||||||||||||| |||||    
T  48626812 gaaccgagcctcctatttcatagggacggtcctgt 48626778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 43905736 - 43905603
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||||||||| |||||||  ||||||| ||||||||| | ||||       |||| |||||||||||||||||  ||||||||||||||    
T  43905736 gtttcatgtttagaagctcttatgattctatttttttagtaaagcttaacaacacaaaaaaattgcgtttttattttattgggggtctattttaaataga 43905637  T
Q  112 gagccgagcctcctatttcatagggacggccctg 145  Q
    ||| |||||||||||||||||||||||| |||||    
T  43905636 gagtcgagcctcctatttcatagggacgaccctg 43905603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 1649724 - 1649601
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||| |||| | | || ||||||||||| |||||| | |||||       |||  ||||||||||| |||||| ||||||||||||||    
T  1649724 gtttcatgtttagaagttcttataactccgattttttaatgaagcttcggtacacaaacaaattgtgtttttattttactggggaactattttaaataga 1649625  T
Q  112 gagccgagcctcctatttcatagg 135  Q
    ||||||||||||| ||||||||||    
T  1649624 gagccgagcctcccatttcatagg 1649601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 28132549 - 28132484
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  28132549 ttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 28132484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 142
Target Start/End: Original strand, 46904923 - 46905053
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn-ttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||||| ||| |||||| |||||||||||||||| |||||| |||||||        ||| |||||||||||| |||  |||||||||||| |     
T  46904923 gtttcatgtttaaaagttcttcttattctgattttttaatgaagcttcgctacacataaaaaattgaatttttattttactgga-acctattttaaaaat 46905021  T
Q  111 agagccgagcctcctatttcatagggacggcc 142  Q
    ||| ||||||||||||||||||||| ||||||    
T  46905022 agaaccgagcctcctatttcataggaacggcc 46905053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 25598965 - 25598833
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgatttttt--aataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    |||| |||||||||| ||||||||||||||||||||  ||| ||| ||||||||||       || | |||| |||||| |   ||||||||||||| ||    
T  25598965 tttcatgtttagaagttcttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgtttt-attttactaaagacctattttaaaaag 25598867  T
Q  111 agagccgagcctcctatttcatagggacggccct 144  Q
    ||||||||||||||||||| ||||| ||||||||    
T  25598866 agagccgagcctcctattttataggaacggccct 25598833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 7767247 - 7767379
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac-nnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||||| ||| |||||||||||||| |||||||| ||||||||||||||         ||| ||||||| ||| | ||| ||||||||||| |     
T  7767247 gtttcatgtttaaaagttcttctgattctgactttttaatgaagcttagctacacacaaaaaaatgcgtttttatcttacttggg-cctattttaaaaat 7767345  T
Q  111 agagccgagcctcctatttcatagggacggccct 144  Q
    ||| ||||||||||||||||||||| ||||||||    
T  7767346 agaaccgagcctcctatttcataggaacggccct 7767379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 51147118 - 51147252
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn--ttgcatttttattttattggggacctattttaaata 109  Q
    ||||||||||||  || |||||||||| |||||||||||| ||||||| |||| |         || |||||| |||||||||||| | ||||||||| |    
T  51147118 gtttcgtgtttaagagttcttctgattatgattttttaatgaagcttacctacgcaaaaaaaaattacattttaattttattggggtc-tattttaaaaa 51147216  T
Q  110 gagagccgagcctcctatttcatagggacggccctg 145  Q
     ||| ||||||||||||||||||||| |||||||||    
T  51147217 tagaaccgagcctcctatttcataggaacggccctg 51147252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 21596516 - 21596623
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatagag 112  Q
    |||| |||||||||| |||| |||||||||||||||||| ||||||||||| |        || ||||||||||||||| ||| | ||||||||| ||||    
T  21596516 tttcatgtttagaagttcttttgattctgattttttaatgaagcttagctataaaaaaaaattacatttttattttattaggggcatattttaaaaagag 21596615  T
Q  113 agccgagc 120  Q
    | ||||||    
T  21596616 aaccgagc 21596623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 6715688 - 6715753
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  ||| |||||||||| |||||||||||||||||||||||  ||||||||||||    
T  6715688 ttttattttactaaggatctattttaaaaagagagccgagcctcctatttcacggggacggccctg 6715753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 13401707 - 13401772
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  |||||||||||||| |||||| |||||||||||||| | |||||||||||||    
T  13401707 ttttattttactaaggacctattttaaaaagagagtcgagcctcctattttacagggacggccctg 13401772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 52654937 - 52654873
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    |||||||||| | ||||||||||||||| ||||||  ||||||||||||||| ||| ||||||||    
T  52654937 ttttattttactagggacctattttaaaaagagagttgagcctcctatttcacaggaacggccct 52654873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 27303366 - 27303502
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac---nnnnnnnttgcatttttattttattggggacctattttaaat 108  Q
    ||||| |||||| ||| ||||||||||||||||||||||| ||||||| ||| ||          | |||||||||||||| |  | ||||||||||||     
T  27303366 gtttcatgtttaaaagttcttctgattctgattttttaatgaagcttaactatacaaaaaaaaaatcgcatttttattttact-agaacctattttaaaa 27303464  T
Q  109 agagagccgagcctcctatttcatagggacggccctgt 146  Q
    | ||| |||||||||||||||||| || ||||||||||    
T  27303465 atagaaccgagcctcctatttcattggaacggccctgt 27303502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Complemental strand, 40151991 - 40151883
Alignment:
Q  34 tgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatagagagccgagcctcctatttcata 133  Q
    |||||||||||||||||| ||||||| ||||||       ||  ||||||||||||  |||   |||||||||| |||||| ||||||||||||||||||    
T  40151991 tgattctgattttttaatgaagcttaactacacaaaacaattatatttttatttta--gggagtctattttaaaaagagagtcgagcctcctatttcata 40151894  T
Q  134 gggacggccct 144  Q
    || ||| ||||    
T  40151893 ggaacgaccct 40151883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 21784580 - 21784531
Alignment:
Q  95 gacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    ||||||||||||| |||||| ||| |||||||||||| ||||||||||||    
T  21784580 gacctattttaaaaagagagtcgaacctcctatttcagagggacggccct 21784531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 46791509 - 46791451
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacgg 140  Q
    |||||||||| | ||| |||||||||||  |||||||||||||||||||||| ||||||||    
T  46791509 ttttattttactaggggcctattttaaa--gagagccgagcctcctatttcacagggacgg 46791451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 27729585 - 27729529
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcataggg 136  Q
    |||||||||| | ||||||||||||||| ||| |||||| |||||||||||| ||||    
T  27729585 ttttattttactagggacctattttaaaaagacagccgaacctcctatttcacaggg 27729529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 2669773 - 2669706
Alignment:
Q  77 catttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    ||||||||||||||| |||| |||||||  || ||||||||||||||| | |  ||||||||||||||    
T  2669773 catttttattttattagggatctatttttgattgagagccgagcctccaaatatatagggacggccct 2669706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 20762317 - 20762364
Alignment:
Q  94 ggacctattttaaatagagagccgagcctcctatttcatagggacggc 141  Q
    |||||||||||||| ||| |||||| |||||||||||| |||||||||    
T  20762317 ggacctattttaaaaagaaagccgaacctcctatttcacagggacggc 20762364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 51939352 - 51939307
Alignment:
Q  97 cctattttaaatagagagccgagcctcctatttcatagggacggcc 142  Q
    ||||||||||| |||||| ||||||| |||||||| ||||||||||    
T  51939352 cctattttaaaaagagagtcgagcctactatttcacagggacggcc 51939307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 17117528 - 17117395
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| |||||||||||||||    
T  17117528 gtttcatgtttagaagctcttctgattctgattttttaataaagcttagctacacaaaaaaattgcatttttattttattgggggcctattttaaataga 17117429  T
Q  112 gagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||||||||||||||||||||||||    
T  17117428 gagccgagcctcctatttcatagggacggccctg 17117395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 18172825 - 18172694
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||       |||| |||||||||||||||||||||||||||||||||    
T  18172825 gtttcatgtttagaaactcttctgattctgattttttaataaagcttggctacacaaaaaaattgcgtttttattttattggggacctattttaaataga 18172726  T
Q  112 gagccgagcctcctatttcatagggacggccct 144  Q
    ||||||| ||| |||||||||||||||||||||    
T  18172725 gagccgaacct-ctatttcatagggacggccct 18172694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 18915936 - 18915799
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn----ttgcatttttattttattggggacctattttaaa 107  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||| || |||           |||||||||||||||||||||| |||||||||||    
T  18915936 gtttcatgtttagaagctcttctgattctatttttttaataaagcttaactgcacaaaaaaaaaaattgcatttttattttattggggccctattttaaa 18915837  T
Q  108 tagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||||||||||||||| |||||||||||||||    
T  18915836 tagagagccgagcctcctattttatagggacggccctg 18915799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 21747114 - 21746983
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||| |||||||| |||||||  |||||||||||||||||  |||||       |||  ||||||||||||||| |||||||||||||||||    
T  21747114 gtttcatgtttaaaagctcttttgattctatttttttaataaagcttaattacacaaaaaaattgtgtttttattttattggagacctattttaaataga 21747015  T
Q  112 gagccgagcctcctatttcatagggacggccc 143  Q
    ||||||||||||||||||||||||||||||||    
T  21747014 gagccgagcctcctatttcatagggacggccc 21746983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 15457682 - 15457812
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn-ttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||        |||  ||||||||||||||  ||||||||||||||||    
T  15457682 gtttcatgttcagaagctcttcttattttgattttttaataaagcttagctacacaaaaagaattgtgtttttattttattgaagacctattttaaatag 15457781  T
Q  111 agagccgagcctcctatttcatagggacggc 141  Q
    |||||||||||||||||||||||||||||||    
T  15457782 agagccgagcctcctatttcatagggacggc 15457812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 38985584 - 38985461
Alignment:
Q  20 tttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn-ttgcatttttattttattggggacctattttaaatagagagccga 118  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||        || | ||||||||||||||||| ||||||||||||||||||||||    
T  38985584 tttagaaactcttctgattctgattttttaataaagcttaactacacacaaaaaattacgtttttattttattgggggcctattttaaatagagagccga 38985485  T
Q  119 gcctcctatttcatagggacggccc 143  Q
    |||| ||||||||||||||||||||    
T  38985484 gcct-ctatttcatagggacggccc 38985461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 13997494 - 13997627
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac-nnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    |||| ||||||| ||| ||||||||||||||||||||||| ||||||||||||||        |||| |||| |||||| || || ||||||||||| |     
T  13997494 gttttgtgtttaaaagttcttctgattctgattttttaatgaagcttagctacacaaaaagaattgcgttttgattttactgtgg-cctattttaaaaat 13997592  T
Q  111 agagccgagcctcctatttcatagggacggccctg 145  Q
    ||| ||||||||||||||||||||| |||| ||||    
T  13997593 agaaccgagcctcctatttcataggaacggtcctg 13997627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 41096354 - 41096286
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctgtgt 148  Q
    |||||||||| | |||  |||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  41096354 ttttattttactaggggtctattttaaaaagagagccgagcctcctatttcacagggacggccctgtgt 41096286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 2063994 - 2064122
Alignment:
Q  20 tttagaagctcttctgattctgatttttt-aataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatagagagccga 118  Q
    |||||||| |||||||||||||||||||| ||| ||| ||||||||||       || | |||| |||||| |  |||||||||||||| ||||||  ||    
T  2063994 tttagaaggtcttctgattctgatttttttaatgaagtttagctacacaaagatattacgtttt-attttactacggacctattttaaaaagagagttga 2064092  T
Q  119 gcctcctatttcatagggacggccctgtgt 148  Q
    ||||||||||||| ||| ||||||||||||    
T  2064093 gcctcctatttcacaggaacggccctgtgt 2064122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 1226065 - 1226016
Alignment:
Q  97 cctattttaaatagagagccgagcctcctatttcatagggacggccctgt 146  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  1226065 cctattttaaaaagagagtcgagcctcctatttcataggaacggccctgt 1226016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 26151562 - 26151497
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||| ||||||||||| |||||||| ||||||||||||||  ||||||||||||    
T  26151562 ttttattttactaggggcctattttaaaaagagagccaagcctcctatttcacggggacggccctg 26151497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 39081585 - 39081708
Alignment:
Q  20 tttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatagagagccgag 119  Q
    |||| ||| |||| ||||||||||||| |||| ||||||| ||||||       ||   ||||||||||| |||| |||||||||||| | ||| ||||     
T  39081585 tttaaaagttcttatgattctgattttataatgaagcttaactacacaaaaaaattatgtttttattttactggg-acctattttaaaaatagaaccgaa 39081683  T
Q  120 cctcctatttcatagggacggccct 144  Q
    |||||||||||||||| ||||||||    
T  39081684 cctcctatttcataggaacggccct 39081708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 4856242 - 4856308
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctgt 146  Q
    |||||||||| | ||| ||||||||||| |||||| ||||||||||||||||  |||||| ||||||    
T  4856242 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacggggacgaccctgt 4856308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 36059788 - 36059666
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctac-acnnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||||||||| |||| ||| |||||||||||||| ||| |||||||| |        |||| ||||||||||| | || |||||||||||| |     
T  36059788 gtttcatgtttagaagttcttgtgaatctgattttttaatgaagtttagctacaaaaaaaaaattgcgtttttattttact-ggtacctattttaaaaaa 36059690  T
Q  111 agagccgagcctcctatttcatag 134  Q
    |||| |||||||||||||||||||    
T  36059689 agagtcgagcctcctatttcatag 36059666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 19367239 - 19367174
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||  ||||||||||| |||||| | |||||||||||||| |||||||||||||    
T  19367239 ttttattttactaggagcctattttaaaaagagagtcaagcctcctatttcacagggacggccctg 19367174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 6530911 - 6530962
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttca 131  Q
    |||||||||| | ||  ||||||||||| |||||||||||||||||||||||    
T  6530911 ttttattttaataggagcctattttaaaaagagagccgagcctcctatttca 6530962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 12269675 - 12269740
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | || |||||||||||| |||||| |||| || |||||||| |||||||| ||||    
T  12269675 ttttattttaataggaacctattttaaaaagagagtcgagtctactatttcacagggacggtcctg 12269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 13020671 - 13020736
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||| ||||||||||| |||||||||| |||||||||  |  ||||||||||||    
T  13020671 ttttattttactaggggcctattttaaaaagagagccgaacctcctattctacggggacggccctg 13020736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 45619225 - 45619290
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  || ||||||||||| |||||| |||||||| |||||||  ||||||||||||    
T  45619225 ttttattttactaagggcctattttaaaaagagagtcgagcctcgtatttcacggggacggccctg 45619290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 7993881 - 7993933
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcat 132  Q
    |||||||||| | ||  ||||||||||| |||||||||| |||||||||||||    
T  7993881 ttttattttactaggtgcctattttaaaaagagagccgaacctcctatttcat 7993933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 13001888 - 13001952
Alignment:
Q  82 ttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctgt 146  Q
    ||||||||  |||| ||||||||||| |||||| ||| |||| ||||| ||||| ||||||||||    
T  13001888 ttattttaccgggggcctattttaaaaagagagtcgatcctcatattttataggaacggccctgt 13001952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 11 - 146
Target Start/End: Complemental strand, 3349613 - 3349478
Alignment:
Q  11 agtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||       |||| ||||||||||||||| ||||||||||||||||    
T  3349613 agtttcatgtttagaaactcttctgattctgattttttaataaagcttagctacacaaaaaaattgcgtttttattttattggagacctattttaaatag 3349514  T
Q  111 agagccgagcctcctatttcatagggacggccctgt 146  Q
    |||||||||||||||||||||||||||||| |||||    
T  3349513 agagccgagcctcctatttcatagggacggtcctgt 3349478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 17513819 - 17513685
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||| ||||||       |||||||||||||||||||||| |||||| ||||||||    
T  17513819 gtttcatgtttagaagctcttctgattctatttttttaataaagcttaactacacaaaataattgcatttttattttattgggggcctattataaataga 17513720  T
Q  112 gagccgagcctcctatttcatagggacggccctgt 146  Q
    ||| ||||||||||||| |||||||||||||||||    
T  17513719 gagtcgagcctcctattacatagggacggccctgt 17513685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 43511799 - 43511935
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn---ttgcatttttattttattggggacctattttaaat 108  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||          |||| ||||||||||||||||| ||||||||||||    
T  43511799 gtttcatgtttagaagctctgctgattctgattttttaataaagcttagctacacaaaaaaaaaattgcgtttttattttattgggggcctattttaaat 43511898  T
Q  109 agagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||||||||||||||||||||| |||||    
T  43511899 agagagccgagcctcctatttcatagggacgaccctg 43511935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 42291762 - 42291636
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||       |||| |||||||||||||||||  ||| ||||||||||    
T  42291762 gtttcatgtttagaagctcttctgattctgatttttttataaagtttaactacacaaaaaaattgcgtttttattttattggggggcta-tttaaataga 42291664  T
Q  112 gagccgagcctcctatttcatagggacg 139  Q
    ||||||||||||||||||||||||||||    
T  42291663 gagccgagcctcctatttcatagggacg 42291636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 10591156 - 10591028
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||       |||| ||||||||| ||||| | | |||||||||||||    
T  10591156 gtttcatgtttagaaactattctgattctgattttttaataaagcttaactacacaaaaaaattgcgtttttattt-attggcgtc-tattttaaataga 10591059  T
Q  112 gagccgagcctcctatttcatagggacggcc 142  Q
    |||||||||||||||||||||||||||||||    
T  10591058 gagccgagcctcctatttcatagggacggcc 10591028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 5829568 - 5829698
Alignment:
Q  18 tgtttagaagctcttctgattctgattttttaataaagcttagctac-acnnnnnnnttgcatttttattttattggggacctattttaaatagagagcc 116  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |        |||||||||||||||||| | | ||||||||||||| ||||||    
T  5829568 tgtttagaagctcttctgattctgattttttaataaagtttagctacaaaaaaaaaattgcatttttattttatttgaggcctattttaaataaagagcc 5829667  T
Q  117 gagcctcc--tatttcatagggacggccctg 145  Q
    ||||||||  ||||||||| |||||||||||    
T  5829668 gagcctcctatatttcataaggacggccctg 5829698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 29156371 - 29156503
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||||||| |||||| |||||||||||||||| ||||||||||       ||| |||||||||||  ||||  |||||||||||||||    
T  29156371 gtttcatgtttagaagctctactgattttgattttttaataaagtttagctacacaaaaaaattgtatttttatttt-gtgggagcctattttaaataga 29156469  T
Q  112 gagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||| |||||||| ||||||||| |||||    
T  29156470 gagccgagcttcctattttatagggacgaccctg 29156503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 20976172 - 20976288
Alignment:
Q  18 tgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatagagagccg 117  Q
    |||||| |||||||||||||| ||||||||||||||||| |||||||||       |||| |||||||   ||||| | |||||||||||||||||||||    
T  20976172 tgtttaaaagctcttctgattatgattttttaataaagcatagctacacaaaaaaattgcgtttttat---attggtggcctattttaaatagagagccg 20976268  T
Q  118 agcctcctatttcataggga 137  Q
    |||||||||||||| |||||    
T  20976269 agcctcctatttcacaggga 20976288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 7390278 - 7390152
Alignment:
Q  18 tgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn-ttgcatttttattttattggggacctattttaaatagagagcc 116  Q
    |||||| ||| ||||||||||| ||||||||||| ||||||||||||||        || | ||||||||||||| ||||| ||||||||| | ||| ||    
T  7390278 tgtttaaaagttcttctgattccgattttttaatgaagcttagctacacacaaaaaattacgtttttattttattagggac-tattttaaaaatagaacc 7390180  T
Q  117 gagcctcctatttcatagggacggccct 144  Q
    |||||| |||||||||||| ||||||||    
T  7390179 gagccttctatttcataggaacggccct 7390152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 13424129 - 13424178
Alignment:
Q  95 gacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  13424129 gacctattttaaaaagagagccgagcctcctatttcacagggacggccct 13424178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 12661489 - 12661619
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgatttttt--aataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    |||| |||||||||| ||||||||||||||||||||  ||||||  ||||||||||       || | |||| |||||| |   ||||||||||||| ||    
T  12661489 tttcatgtttagaagttcttctgattctgattttttttaataaaatttagctacacaaaaaaattacgtttt-attttactaaagacctattttaaaaag 12661587  T
Q  111 agagccgagcctcctatttcatagggacggcc 142  Q
    |||||||||||||| |||||| ||||||||||    
T  12661588 agagccgagcctcccatttcacagggacggcc 12661619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 4177381 - 4177435
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||| |||||||||| |||||||||| |||||||||||| ||||||| ||||||    
T  4177381 gtttcatgtttagaagttcttctgattatgattttttaatgaagcttaactacac 4177435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 17326026 - 17326080
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||  ||||||||||    
T  17326026 gtttcgtgtttaaaagttcttctgattctgattttttaatgaattttagctacac 17326080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 13474880 - 13474945
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | | | ||||||||||| |||||| ||||||||||||||||  ||||||||||||    
T  13474880 ttttattttactagaggcctattttaaaaagagagtcgagcctcctatttcacggggacggccctg 13474945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 37047032 - 37047097
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  || ||||||||||| |||||||||| ||||||||||||  ||||||||||||    
T  37047032 ttttattttactaagggcctattttaaaaagagagccgaacctcctatttcacggggacggccctg 37047097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 41612989 - 41613034
Alignment:
Q  97 cctattttaaatagagagccgagcctcctatttcatagggacggcc 142  Q
    ||||||||||| ||||||| ||||||||||||||||||| ||||||    
T  41612989 cctattttaaaaagagagcagagcctcctatttcataggaacggcc 41613034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 931550 - 931682
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||| | |||| |||||||||||  |||  | ||||| |||||       |||||||||| ||||| | | |  |||||||||| |||    
T  931550 gtttcatgtttagaagtttttctaattctgattttccaatgcaacttagttacacaaaaaacttgcatttttgttttactagaggtctattttaaaaaga 931649  T
Q  112 gagccgagcctcctatttcatagggacggccct 144  Q
    ||||||| |||||||||||||||| ||| ||||    
T  931650 gagccgaacctcctatttcataggaacgaccct 931682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 23069474 - 23069508
Alignment:
Q  111 agagccgagcctcctatttcatagggacggccctg 145  Q
    |||| ||||||||||||||||||||||||||||||    
T  23069474 agagtcgagcctcctatttcatagggacggccctg 23069508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 33281855 - 33281977
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||| |||| ||||| |||| ||||||| ||| ||| ||||||       |||| ||||||||||| || | |||||||||||| |||    
T  33281855 gtttcatgtttagaagttcttttgattatgatcttttaatgaagtttaactacacaaaaagattgcgtttttattttactgag-acctattttaaaaaga 33281953  T
Q  112 gagccgagcctcctatttcatagg 135  Q
    ||| | | |||| |||||||||||    
T  33281954 gagtcaaacctcatatttcatagg 33281977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 19099112 - 19099063
Alignment:
Q  96 acctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||||| ||||| ||||||||| ||||| | |||||||||||||    
T  19099112 acctattttaaaaagagaaccgagcctcttattttagagggacggccctg 19099063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 23069413 - 23069458
Alignment:
Q  20 tttagaagctcttctgattctgattttttaataaagcttagctaca 65  Q
    |||||||| |||||| ||| |||||||||||| |||||||||||||    
T  23069413 tttagaagttcttctaattttgattttttaatgaagcttagctaca 23069458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 27351531 - 27351584
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    |||| |||||||||| |||||||||||  |||||||||| ||| ||||||||||    
T  27351531 tttcatgtttagaagttcttctgattcgaattttttaatgaagtttagctacac 27351584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 13656475 - 13656511
Alignment:
Q  95 gacctattttaaatagagagccgagcctcctatttca 131  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  13656475 gacctattttaaaaagagagccgaacctcctatttca 13656511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 16061085 - 16061133
Alignment:
Q  18 tgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    |||||||||  | ||||||||||||||||||||| ||||||| ||||||    
T  16061085 tgtttagaattttttctgattctgattttttaatgaagcttaactacac 16061133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 16515754 - 16515817
Alignment:
Q  79 tttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccc 143  Q
    ||||||||||| | ||| ||||||||||| | ||| |||| |||||||||||||||| |||||||    
T  16515754 tttttattttactcggg-cctattttaaaaatagaaccgaacctcctatttcataggaacggccc 16515817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 26377587 - 26377539
Alignment:
Q  83 tattttattggggacctattttaaatagagagccgagcctcctatttca 131  Q
    ||||||| | ||| ||||||||||| |||||| ||||||||||||||||    
T  26377587 tattttactaggggcctattttaaaaagagagtcgagcctcctatttca 26377539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 36718443 - 36718375
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctgtgt 148  Q
    |||||||||| |  ||| |||||||||| ||||||  ||||||||||||| | || |||||||||||||    
T  36718443 ttttattttactatggatctattttaaaaagagagttgagcctcctattttacagagacggccctgtgt 36718375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 1e-42; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 29308350 - 29308217
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||       |||| ||||||||||||||||| |||||||||||||||    
T  29308350 gtttcatgtttagaagctcttatgattctgattttttaataaagcttaactacacaaaaaaattgcgtttttattttattgggggcctattttaaataga 29308251  T
Q  112 gagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||||||||||| ||||||||||||    
T  29308250 gagccgagcctcctatttcatggggacggccctg 29308217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 1690600 - 1690473
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||||| |||||||||||||||||| |||||| ||||||||||       |||||||||||||||||||| | |||||||||||||||    
T  1690600 gtttcatgtttagaagcttttctgattctgatttttttataaagtttagctacacaaaaaaattgcatttttattttattggaggcctattttaaataga 1690501  T
Q  112 gagccgagcctcctatttcatagggacg 139  Q
    ||||||||||||||||||||||| ||||    
T  1690500 gagccgagcctcctatttcatagagacg 1690473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 1092924 - 1092796
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||        |||| ||||||||||||| | | |||||||||||||||    
T  1092924 gtttcatgtttagaagctcttttgattctaattttttaataaagcttagctacataaaaaaattgcgtttttattttattagaggcctattttaaataga 1092825  T
Q  112 gagccgagcctcctatttcatagggacgg 140  Q
    || ||||||||||||||||||||||||||    
T  1092824 gaaccgagcctcctatttcatagggacgg 1092796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 31861172 - 31861302
Alignment:
Q  18 tgtttagaagctcttctgattctgatttt-ttaataaagcttagctacacnnnnnnnttgc-atttttattttattggggacctattttaaatagagagc 115  Q
    ||||||||||||||||| |||||  |||| ||||||||||||| ||||||       ||||  |||||||| |||||||| ||||||||||||||||||     
T  31861172 tgtttagaagctcttctaattctattttttttaataaagcttaactacacaaaaaaattgcgttttttattctattgggggcctattttaaatagagagt 31861271  T
Q  116 cgagcctcctatttcatagggacggccctgt 146  Q
    |||||||||||||||||||||||||||||||    
T  31861272 cgagcctcctatttcatagggacggccctgt 31861302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 11088752 - 11088884
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||| |||||| |||||||||||||||| ||| ||||||||||       ||  ||||||||||||  |||| ||||||||||| |||    
T  11088752 gtttcatgtttagaagttcttctaattctgattttttaatgaagtttagctacacaaaaaatttatatttttatttta--gggggcctattttaaaaaga 11088849  T
Q  112 gagccgagcctcctatttcatagggacggccctgt 146  Q
    |||  ||||||||||||||||||  ||||||||||    
T  11088850 gagttgagcctcctatttcatagaaacggccctgt 11088884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 2618602 - 2618667
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||| ||||||||||| |||||||||| |||||||||||| | |||||||||||    
T  2618602 ttttattttactaggggcctattttaaaaagagagccgaacctcctatttcacatggacggccctg 2618667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 6361012 - 6361069
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcataggga 137  Q
    |||||||||| | ||||||||||||||| |||||||||||||| |||||||| |||||    
T  6361012 ttttattttactagggacctattttaaaaagagagccgagccttctatttcacaggga 6361069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 30915244 - 30915115
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||| ||| ||||||||||||||||||||||| ||||||| |||||         | ||||||||||||| | |  |||||||||||| |||    
T  30915244 gtttcatgtttataagttcttctgattctgattttttaatgaagcttaactacaaataaaaaatacatttttattttact-gaaacctattttaaaaaga 30915146  T
Q  112 gagccgagcctcctatttcatagggacggcc 142  Q
    |||  ||||||| ||||||||||| ||||||    
T  30915145 gagttgagcctcttatttcataggaacggcc 30915115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 350598 - 350719
Alignment:
Q  12 gtttcgtgtttagaagctctt-ctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||||||||| |||| || ||||| |||||||||| ||| ||||||||||       ||   |||||||||||  |||||||||||||||| ||    
T  350598 gtttcatgtttagaagttctttctaattctaattttttaatgaagtttagctacacaaaaaagttatgtttttatttta--ggggacctattttaaaaag 350695  T
Q  111 agagccgagcctcctatttcatag 134  Q
    |||| ||| |||||||||||||||    
T  350696 agagtcgaacctcctatttcatag 350719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 29401388 - 29401450
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggcc 142  Q
    |||||||||| | ||| ||||||||||| |||||| ||||||||||||||||  |||||||||    
T  29401388 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacggggacggcc 29401450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 22503993 - 22504050
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcataggga 137  Q
    |||||||||| || ||  |||||||||| ||||| |||||||||||||||||||||||    
T  22503993 ttttattttactgagggtctattttaaaaagagaaccgagcctcctatttcataggga 22504050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Complemental strand, 31258365 - 31258321
Alignment:
Q  101 ttttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||    
T  31258365 ttttaaaaagagagccgagcctcctatttcacggggacggccctg 31258321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 133
Target Start/End: Complemental strand, 3748443 - 3748329
Alignment:
Q  20 tttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnt--tgcatttttattttattggggacctattttaaatagagagccg 117  Q
    |||| ||| |||||||||| ||| |||||||| ||||||||||||||          ||||||||||||||| | || |||||||||||| | ||| |||    
T  3748443 tttaaaagttcttctgattttgactttttaatgaagcttagctacacacaaaaaaaatgcatttttattttactcgg-acctattttaaaaatagaaccg 3748345  T
Q  118 agcctcctatttcata 133  Q
    ||||||||||||||||    
T  3748344 agcctcctatttcata 3748329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 29149640 - 29149698
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacg 139  Q
    |||||||||| | | ||||||||||||| |||||||||||||| ||||||||| ||||||    
T  29149640 ttttattttactagagacctattttaaaaagagagccgagcct-ctatttcatggggacg 29149698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 6294435 - 6294490
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctga--ttttttaataaagcttagctaca 65  Q
    ||||| |||||||||| |||| |||||||||  ||||||||| |||||||||||||    
T  6294435 gtttcatgtttagaagttcttttgattctgattttttttaatgaagcttagctaca 6294490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 11575167 - 11575235
Alignment:
Q  77 catttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||||| ||| ||||||||  || ||||||||||||||  | |  |||||||||||||||    
T  11575167 catttttattttattaggggcctatttttgattgagagccgagcctctaaatatatagggacggccctg 11575235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 5e-42; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 34523836 - 34523709
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||       |||| ||||||||||||||||| |||||||||||||||    
T  34523836 gtttcatgtttagaagctcttctgattctgattttt-aataaagcttagctacacaaaaaaattgcgtttttattttattgggggcctattttaaataga 34523738  T
Q  112 gagccgagcctcctatttcatagggacgg 140  Q
    |||||||||||||||||||||||||||||    
T  34523737 gagccgagcctcctatttcatagggacgg 34523709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 12531740 - 12531871
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn--ttgcatttttattttattggggacctattttaaata 109  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||         |||  ||||||||||||||||  |||||||||||||    
T  12531740 gtttcatgtttagaagctcttcttattctgattttttaataaagcttagctacacacaaaaaaattgtgtttttattttattgggagcctattttaaata 12531839  T
Q  110 gagagccgagcctcctatttcatagggacggc 141  Q
    ||||||| ||||||||||||||||||||||||    
T  12531840 gagagccaagcctcctatttcatagggacggc 12531871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 39697821 - 39697695
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn-ttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| ||||||||| |||||||||||||||||||||||||     |||||||||        ||||||||||||   ||||||| ||||||||||||||    
T  39697821 gtttcatgtttagaaactcttctgattctgattttttaata-----tagctacacaaaaaaaattgcatttttat---attgggggcctattttaaatag 39697730  T
Q  111 agagccgagcctcctatttcatagggacggccctg 145  Q
    ||| || ||||||||||||||||||||||||||||    
T  39697729 agacccaagcctcctatttcatagggacggccctg 39697695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 3574910 - 3574849
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggc 141  Q
    |||||||||| || ||||||||||||||||||||| |||||||||||||||||||| |||||    
T  3574910 ttttattttactgaggacctattttaaatagagagtcgagcctcctatttcataggaacggc 3574849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 13585555 - 13585620
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||| ||||||||||| |||||| |||||||||||||||| |||||||||||||    
T  13585555 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacagggacggccctg 13585620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 44664418 - 44664360
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggac 138  Q
    |||||||||| | ||||||||||||||| ||||||||||||| ||||||||| ||||||    
T  44664418 ttttattttactagggacctattttaaaaagagagccgagccacctatttcacagggac 44664360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 3445782 - 3445847
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||| ||||||||||| |||||| |||||||||||||||| |||||||| ||||    
T  3445782 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacagggacggtcctg 3445847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 18420402 - 18420355
Alignment:
Q  98 ctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  18420402 ctattttaaaaagagagccgagcctcctatttcacagggacgaccctg 18420355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 35875080 - 35875134
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||| |||||| ||| ||||||||||||||||||||||| |||||||| |||||    
T  35875080 gtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagttacac 35875134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 139
Target Start/End: Complemental strand, 23567097 - 23567033
Alignment:
Q  74 ttgcatttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacg 139  Q
    |||| ||||||||||||||||| | ||||||||||||||||  ||||| ||||||||||| |||||    
T  23567097 ttgcgtttttattttattgggggcttattttaaatagagagttgagcc-cctatttcataaggacg 23567033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 7858334 - 7858398
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    |||||||||| | ||| ||||||||||| |||||| ||||||||||||| ||  |||||||||||    
T  7858334 ttttattttactaggggcctattttaaaaagagagtcgagcctcctattccacggggacggccct 7858398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 140
Target Start/End: Complemental strand, 42951593 - 42951549
Alignment:
Q  96 acctattttaaatagagagccgagcctcctatttcatagggacgg 140  Q
    |||||||||||| ||||||||||||||||||||||| | ||||||    
T  42951593 acctattttaaaaagagagccgagcctcctatttcacaaggacgg 42951549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 36515038 - 36514999
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaat 51  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  36515038 gtttcgtgtttaaaagttcttctgattctgattttttaat 36514999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 133
Target Start/End: Original strand, 3471867 - 3471901
Alignment:
Q  99 tattttaaatagagagccgagcctcctatttcata 133  Q
    ||||||||| |||||||||||||||||||||||||    
T  3471867 tattttaaaaagagagccgagcctcctatttcata 3471901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 42076290 - 42076344
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||| |||||| ||| |||| |||||||||||||||||| ||||||| ||||||    
T  42076290 gtttcatgtttaaaagttcttttgattctgattttttaatgaagcttatctacac 42076344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 18112387 - 18112424
Alignment:
Q  94 ggacctattttaaatagagagccgagcctcctatttca 131  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  18112387 ggacctattttaaaaagagagccgaacctcctatttca 18112424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 27074723 - 27074788
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  |||||||||||||| ||| ||||||||||| ||||||| | |||||| ||||    
T  27074723 ttttattttactatggacctattttaaaaagatagccgagcctcatatttcacaaggacggtcctg 27074788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 33452940 - 33452993
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctaca 65  Q
    ||||| |||||||||| |||||| ||| |||||||||||| ||| |||||||||    
T  33452940 gtttcatgtttagaagttcttctaattatgattttttaatgaagtttagctaca 33452993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 1366190 - 1366322
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||       || | |||||||||||||||||| ||||||||||||||    
T  1366190 gtttcatgtttacaagctcttctgattctgattttttaataaagcttagctacacaaaaaaattacgtttttattttattggggatctattttaaataga 1366289  T
Q  112 gagccgagcctcctatttcatagggacggccct 144  Q
    ||||||||||| |||||||||||||||||||||    
T  1366290 gagccgagccttctatttcatagggacggccct 1366322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 26282398 - 26282281
Alignment:
Q  31 ttctgattctgattttttaataaagcttagctacacnnnnnnn--ttgcatttttattttattggggacctattttaaatagagagccgagcctcctatt 128  Q
    ||||||||||||||||||||||||||||| ||||||         |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  26282398 ttctgattctgattttttaataaagcttaactacacaaaaaaaaattgcttttttattttattgggggcctattttaaatagtgagccgagcctcctatt 26282299  T
Q  129 tcatagggacggccctgt 146  Q
    ||||||||||||||||||    
T  26282298 tcatagggacggccctgt 26282281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 25610247 - 25610378
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||  ||||||||||||||    
T  25610247 gtttcatgtttggaagctcttctgattctgattttttaataaagcttagctaca-aaaaaaattgcatttttattttattgggg-tctattttaaataga 25610344  T
Q  112 gagccgagcctcctatttcatagggacggccctg 145  Q
    ||| ||| |||| ||||| |||||||||||||||    
T  25610345 gagtcgaacctcttattttatagggacggccctg 25610378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 144
Target Start/End: Complemental strand, 40001594 - 40001462
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||||||||||| |||||  |||| |||||||||||| ||||||       ||||||||||||||||||||  ||||||||||||||||    
T  40001594 gtttcatgtttagaagctcttctaattctatttttctaataaagcttaactacacaaaaaaattgcatttttattttattggaaacctattttaaataga 40001495  T
Q  112 gagccgagcctcctatttcatagggacggccct 144  Q
    ||| ||| ||||||||||||||| |||||||||    
T  40001494 gagtcgaacctcctatttcatagagacggccct 40001462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 36438234 - 36438104
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||| ||| ||||||||||||||||||||||| ||||||||||||||       |||||||||||||||| || || ||||||||||| | |    
T  36438234 gtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagctacacacaaaaattgcatttttattttactgagg-cctattttaaaaata 36438136  T
Q  112 gagccgagcctcctatttcatagggacggccc 143  Q
    || |||||||||||||||| |||| |||||||    
T  36438135 gaaccgagcctcctatttcgtaggtacggccc 36438104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 44875977 - 44875909
Alignment:
Q  77 catttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||| | ||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  44875977 catttttattttagtagggacctattttaaaaagagagtcgagcctcctatttcatagggacggccctg 44875909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 29730970 - 29730839
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||| | |||||||| |||||||||||| || ||||||||||        ||  |||||||||||| ||||| ||||||||||| |||    
T  29730970 gtttcatgtttagaagtttttctgattgtgattttttaatgaaacttagctacaaaaaaaaatt--atttttattttactgggggcctattttaaaaaga 29730873  T
Q  112 gagccgagcctcctatttcatagggacggccctg 145  Q
    ||| |||||||||||||||||||| ||| |||||    
T  29730872 gagtcgagcctcctatttcataggaacgaccctg 29730839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 29741977 - 29742108
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||||||||| | |||||||| |||||||||||| || ||||||||||        |||  ||||||||||| ||||| ||||||||||| |||    
T  29741977 gtttcatgtttagaagtttttctgattgtgattttttaatgaaacttagctacaaaaaaaaattg--tttttattttactgggggcctattttaaaaaga 29742074  T
Q  112 gagccgagcctcctatttcatagggacggccctg 145  Q
    ||| |||||||||||||||||||| ||| |||||    
T  29742075 gagtcgagcctcctatttcataggaacgaccctg 29742108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 33910314 - 33910379
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  33910314 ttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 33910379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 140
Target Start/End: Complemental strand, 40841127 - 40840999
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgatt--ttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaata 109  Q
    ||||| |||||||||| |||||| |||||||||  ||||||||||||||||||||||       |||||||||||||||||| | |||||||||||||      
T  40841127 gtttcatgtttagaagttcttctaattctgattttttttaataaagcttagctacac-aaaaaattgcatttttattttatt-gtgacctattttaaaat 40841030  T
Q  110 gagagccgagcctcctatttcatagggacgg 140  Q
    ||||| ||| |||| ||||| ||||| ||||    
T  40841029 gagagtcgaacctcatattttataggaacgg 40840999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 773766 - 773640
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn---ttgcatttttattttattggggacctattttaaat 108  Q
    ||||| |||||||||| |||||||||| |||||||||||| ||||||| |||||           || ||||||||||||||||| | |||||||||||     
T  773766 gtttcatgtttagaagttcttctgattttgattttttaatgaagcttaactacataaaaaaaaaattacatttttattttattggcggcctattttaaaa 773667  T
Q  109 agagagccgagcctcctatttcatagg 135  Q
    |||||| ||| |||||| |||||||||    
T  773666 agagagtcgaacctcctgtttcatagg 773640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 32956948 - 32957072
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn-ttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||||||||| |||| || || |||||||||||| |||||||||| |||        ||||| |||||||||||||| | ||||||||||| ||    
T  32956948 gtttcatgtttagaagttcttttggttttgattttttaatgaagcttagcttcacaaaaaaaattgcagttttattttattggaggcctattttaaaaag 32957047  T
Q  111 agagccgagcctcctatttcatagg 135  Q
    ||||  ||||||||||||| |||||    
T  32957048 agagttgagcctcctattttatagg 32957072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 26633544 - 26633598
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||| |||||||| | ||||||||||||||||||||||| ||||||||||||||    
T  26633544 gtttcatgtttagacgttcttctgattctgattttttaatgaagcttagctacac 26633598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 42312191 - 42312313
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac-nnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||||||||| |||||||||||| |||||||||| ||||||| ||||||        |||  |||||||||||  | |||||||||||||| ||    
T  42312191 gtttcatgtttagaagttcttctgattctaattttttaatgaagcttaactacacacaaaaaattgtgtttttattttacagtggacctattttaaaaag 42312290  T
Q  111 agagccgagcctcctatttcata 133  Q
    |||| |||| || ||||||||||    
T  42312291 agagtcgagtcttctatttcata 42312313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 4100210 - 4100269
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacg 139  Q
    |||||||||| | | || |||||||||| |||||||||| ||||||||||||||||||||    
T  4100210 ttttattttactagagatctattttaaaaagagagccgaacctcctatttcatagggacg 4100269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 3799646 - 3799593
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctaca 65  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||| |||||||||    
T  3799646 gtttcatgtttagaagttcttctgattctgatttttaaatgaagtttagctaca 3799593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 28590027 - 28589974
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    |||| |||||||||  ||||||||||||||||||||||| ||| ||||||||||    
T  28590027 tttcatgtttagaaattcttctgattctgattttttaatgaagtttagctacac 28589974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Original strand, 30739307 - 30739360
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    |||| ||| |||||| ||||||||||||||||||||||| ||| ||||||||||    
T  30739307 tttcatgtatagaagttcttctgattctgattttttaatgaagtttagctacac 30739360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 44002815 - 44002762
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    |||| |||||||||| |||||||||| | |||||||||| ||||||||||||||    
T  44002815 tttcatgtttagaagttcttctgattataattttttaatgaagcttagctacac 44002762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 44893842 - 44893777
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||  ||| |||||||||| |||||| ||||||||||||||||  | ||||||||||    
T  44893842 ttttattttattaaggatctattttaaaaagagagtcgagcctcctatttcacggagacggccctg 44893777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 42160937 - 42160872
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  ||| |||||||||| |||||||  | |||||||||||| |||||||||||||    
T  42160937 ttttattttactaaggatctattttaaaaagagagcataacctcctatttcacagggacggccctg 42160872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 6379899 - 6379835
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    |||||||||| |  || ||||||||||| || |||||||||||| ||||||| ||||||| ||||    
T  6379899 ttttattttactatgggcctattttaaaaagtgagccgagcctcatatttcacagggacgaccct 6379835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 55134390 - 55134519
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||       |||  |||||||||||||||||||||||||||||||||    
T  55134390 gtttcatgtttagaagctcttttgatcctgattttttaataaagcttagctacacaaaaaaattgtgtttttattttattggggacctattttaaataga 55134489  T
Q  112 gagccgagcctcctatttcatagggacggc 141  Q
    |||||||||||| |||||||||||||||||    
T  55134490 gagccgagcctcatatttcatagggacggc 55134519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 34982412 - 34982539
Alignment:
Q  18 tgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn-ttgcatttttattttattggggacctattttaaatagagagcc 116  Q
    |||||||||  ||||||||||||||||||| ||||||||||| ||||||        ||||||||||||||||||| ||||||||||| |||||||| ||    
T  34982412 tgtttagaatttcttctgattctgattttt-aataaagcttaactacacaaaaaaaattgcatttttattttattgaggacctattttcaatagagaacc 34982510  T
Q  117 gagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||| ||||||||| |||||    
T  34982511 gagcctcctattttatagggacgaccctg 34982539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 21791430 - 21791305
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatagag 112  Q
    |||| |||||||||| |||||||||||| |||||| ||||||| |||||| |||       |||||||| ||||||| ||| | ||||||||||| ||||    
T  21791430 tttcatgtttagaagttcttctgattctaattttt-aataaagtttagctgcacagaaaaattgcatttctattttactggag-cctattttaaaaagag 21791333  T
Q  113 agccgagcctcctatttcatagggacgg 140  Q
    || |||||||| ||||||||||| ||||    
T  21791332 agtcgagcctcatatttcataggaacgg 21791305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 41038501 - 41038565
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    |||||||||| | ||| ||||||||||| |||||||||||||||||||||||  |||||||||||    
T  41038501 ttttattttactaggggcctattttaaaaagagagccgagcctcctatttcaccgggacggccct 41038565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 51066109 - 51066061
Alignment:
Q  97 cctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  51066109 cctattttaaatagagaaccgagcctcctatttcatagggacgtccctg 51066061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 53011981 - 53012031
Alignment:
Q  97 cctattttaaatagagagccgagcctcctatttcatagggacggccctgtg 147  Q
    ||||||||||| ||||||||||||||||||||||| ||| |||||||||||    
T  53011981 cctattttaaaaagagagccgagcctcctatttcacaggaacggccctgtg 53012031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 9925295 - 9925332
Alignment:
Q  29 tcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9925295 tcttctgattctgattttttaataaagcttagctacac 9925332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 29221438 - 29221377
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggc 141  Q
    |||||||||| | | | ||||||||||| ||||||||||||||||||||||| |||||||||    
T  29221438 ttttattttactagaggcctattttaaaaagagagccgagcctcctatttcacagggacggc 29221377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 11681556 - 11681492
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    |||||||||| | ||| ||||||||||| |||||| ||||||||||||||||  |||||||||||    
T  11681556 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacggggacggccct 11681492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 11689835 - 11689771
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    |||||||||| | ||| ||||||||||| |||||| ||||||||||||||||  |||||||||||    
T  11689835 ttttattttactaggggcctattttaaaaagagagtcgagcctcctatttcacggggacggccct 11689771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 32130673 - 32130544
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgatttttt---aataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaata 109  Q
    |||| |||||||||| ||||||||||||||||||||   ||||||  ||||||||||       || | |||| |||||| |  ||||||||||||||      
T  32130673 tttcatgtttagaagttcttctgattctgatttttttttaataaaatttagctacacaaaaaaattacgtttt-attttactaaggacctattttaaaag 32130575  T
Q  110 gagagccgagcctcctatttcatagggacgg 140  Q
     ||||||||||||||||||||| ||||||||    
T  32130574 aagagccgagcctcctatttcacagggacgg 32130544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 24449280 - 24449334
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||| |||||| ||| ||||||||||||||||||||||| |||||||| |||||    
T  24449280 gtttcatgtttaaaagttcttctgattctgattttttaatgaagcttagttacac 24449334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 27632648 - 27632704
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcataggg 136  Q
    |||||||||| | ||| |||||||||||  |||||||||||||||||||||| ||||    
T  27632648 ttttattttactaggggcctattttaaaatgagagccgagcctcctatttcacaggg 27632704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 23256847 - 23256897
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttca 131  Q
    |||||||||| | ||| ||||||||||| |||||||||||||||||||||||    
T  23256847 ttttattttactaggg-cctattttaaaaagagagccgagcctcctatttca 23256897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 9607258 - 9607324
Alignment:
Q  79 tttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||| |||||||||||| |   ||||||||||||||| ||| |  |||||||||||||    
T  9607258 tttttattttattagggacctatttttatatgagagccgagcctccaattactcagggacggccctg 9607324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 19661630 - 19661695
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||  ||||||||||| ||||||| |||||||||||||||   |||||||||||    
T  19661630 ttttattttactaggagcctattttaaaaagagagcagagcctcctatttcactaggacggccctg 19661695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 143
Target Start/End: Original strand, 12971587 - 12971718
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaataga 111  Q
    ||||| |||| |||||||   ||||||||||||||||||||||| ||||||| ||       |||| ||||||||||||| |||   |||||||||||||    
T  12971587 gtttcatgttaagaagctaaactgattctgattttttaataaagtttagctatacaaaaaaattgcgtttttattttattaggggtttattttaaataga 12971686  T
Q  112 gagccgagcctcctatttcatagggacggccc 143  Q
    |||||||||||||||||| |||||||| ||||    
T  12971687 gagccgagcctcctattttatagggacagccc 12971718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 51109913 - 51109848
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | ||| ||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  51109913 ttttattttactaggggcctattttaaaaagagagccgagcctcctatttcacagggacggccctg 51109848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 25930791 - 25930918
Alignment:
Q  20 tttagaagctcttctgattctgatttttt--aataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatagagagccg 117  Q
    |||||||||||||||||||||||||||||  ||| ||| ||||||||||       || | ||||||||||||| ||| |||||||| || |||||| ||    
T  25930791 tttagaagctcttctgattctgattttttttaatgaagtttagctacacaaaaaaattacgtttttattttattaggggcctattttcaaaagagagtcg 25930890  T
Q  118 agcctcctatttcatagggacggccctg 145  Q
    ||| |||||||| | ||||||| |||||    
T  25930891 agcttcctattttacagggacgaccctg 25930918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 26486258 - 26486125
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac-nnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||||| ||| ||||||||||||||||||| ||| ||||||||||||||         ||||||||||||||| | ||| |||||||| || |     
T  26486258 gtttcatgtttaaaagttcttctgattctgatttttaaatgaagcttagctacacacaaaaaaatgcatttttattttactcggg-cctattttgaaaat 26486160  T
Q  111 agagccgagcctcctatttcatagggacggccctg 145  Q
    ||| ||||||||||||||| ||||| |||||||||    
T  26486159 agaaccgagcctcctattttataggaacggccctg 26486125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 145
Target Start/End: Original strand, 42740354 - 42740419
Alignment:
Q  79 tttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||| ||||| ||||||||||| | ||| ||||||||||||||||||||| |||||||||    
T  42740354 tttttattttactgggg-cctattttaaaaatagaaccgagcctcctatttcataggaacggccctg 42740419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Original strand, 50371315 - 50371369
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||| |||||||||| |||| |||||||||||||||||| ||||||||||||||    
T  50371315 gtttcatgtttagaagttcttatgattctgattttttaatgaagcttagctacac 50371369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 20905100 - 20905035
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||| ||| | ||||||||||||||| |||||| |||||||||||||||| ||||||| |||||    
T  20905100 ttttatcttactagggacctattttaaaaagagagtcgagcctcctatttcacagggacgaccctg 20905035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 145
Target Start/End: Complemental strand, 37873639 - 37873506
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacacnnnnnnn-ttgcatttttattttattggggacctattttaaatag 110  Q
    ||||| |||||| ||| |||| ||||||| |||||||||| ||||||| ||||||        || ||||||||||||| ||||| ||||||||||| |     
T  37873639 gtttcatgtttaaaagttcttatgattctaattttttaatgaagcttaactacacacaaaaaattacatttttattttactgggg-cctattttaaaaat 37873541  T
Q  111 agagccgagcctcctatttcatagggacggccctg 145  Q
    |||  |||||||||||||||||||  |||||||||    
T  37873540 agaatcgagcctcctatttcatagaaacggccctg 37873506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 6150991 - 6151037
Alignment:
Q  99 tattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||| |||||| |||||||||||||||| |||||||||||||    
T  6150991 tattttaaaaagagagtcgagcctcctatttcacagggacggccctg 6151037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 18127753 - 18127688
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  ||||||||||| || ||||| |||| |||||||||||| |||||||||||||    
T  18127753 ttttattttactaaggacctattttgaaaagagaaccgaacctcctatttcacagggacggccctg 18127688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 28885485 - 28885424
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggc 141  Q
    |||||||||| | || | |||||||||| |||||| |||||||||||||||||| |||||||    
T  28885485 ttttattttactaggtatctattttaaaaagagagtcgagcctcctatttcatatggacggc 28885424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 48722180 - 48722119
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggc 141  Q
    |||||||||| |  |||||||||||||| |||||| |||||||||||||||| | |||||||    
T  48722180 ttttattttactatggacctattttaaaaagagagtcgagcctcctatttcacacggacggc 48722119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 144
Target Start/End: Original strand, 259 - 323
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccct 144  Q
    |||||||||| ||||  ||||||||||| ||||| ||||||||||||||||| ||| || |||||    
T  259 ttttattttactgggagcctattttaaaaagagaaccgagcctcctatttcacaggaacagccct 323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 20470884 - 20470928
Alignment:
Q  101 ttttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||    
T  20470884 ttttaaaaagagagccgagcctcctatttcacggggacggccctg 20470928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 39080503 - 39080451
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgattttttaataaagcttagctaca 65  Q
    |||| |||||||||| |||| |||||||||||||| ||| |||||||||||||    
T  39080503 tttcatgtttagaagttcttatgattctgatttttcaatgaagcttagctaca 39080451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 13120749 - 13120710
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaat 51  Q
    |||||||||||| ||| |||||||||||||||||||||||    
T  13120749 gtttcgtgtttaaaagttcttctgattctgattttttaat 13120710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 15441469 - 15441516
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagctta 59  Q
    ||||| |||||||||| |||||||||| |||||||||||| |||||||    
T  15441469 gtttcatgtttagaagttcttctgattttgattttttaatgaagctta 15441516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 146
Target Start/End: Complemental strand, 30004790 - 30004656
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgattt--tttaataaagcttagctacacnnnnnnnttgcatttttattttattggggacctattttaaatag 110  Q
    |||| |||||||||| |||||||||||||||||  || ||| ||| ||||||||||       || | |||| |||||| |  || ||||||||||| ||    
T  30004790 tttcatgtttagaagttcttctgattctgatttaattcaatgaagtttagctacacaaaaaaattacgtttt-attttactatgggcctattttaaaaag 30004692  T
Q  111 agagccgagcctcctatttcatagggacggccctgt 146  Q
    ||||||||||||||||||| | | |||||| |||||    
T  30004691 agagccgagcctcctattttacatggacggtcctgt 30004656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 9777595 - 9777649
Alignment:
Q  11 agtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctaca 65  Q
    |||||| |||||||||| | |||| |||||||||||||||| ||| |||||||||    
T  9777595 agtttcatgtttagaagttattctaattctgattttttaatgaagtttagctaca 9777649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 27703417 - 27703363
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||| |||||||||| | || ||||||||||||||||| |||||||| ||||||    
T  27703417 gtttcatgtttagaagttattatgattctgattttttaacaaagcttaactacac 27703363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 17487093 - 17487028
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  || ||||||||||| |||||| ||||||||||||||||  |||||| |||||    
T  17487093 ttttattttactaagggcctattttaaaaagagagtcgagcctcctatttcacggggacgaccctg 17487028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 24556988 - 24557037
Alignment:
Q  17 gtgtttagaagctcttctgattctgattttttaataaagcttagctacac 66  Q
    ||||||| ||| |||||||||||| |||||| ||| ||||||||||||||    
T  24556988 gtgtttaaaagttcttctgattctaatttttcaatgaagcttagctacac 24557037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 29207907 - 29207842
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| |  |||||||||||| | |||||| |||||||||||||||| ||| |||| ||||    
T  29207907 ttttattttactatggacctattttagaaagagagtcgagcctcctatttcacaggaacggtcctg 29207842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 24183832 - 24183764
Alignment:
Q  77 catttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    ||||||||||||||| | | ||||||||  || ||||||||||||||| | |  |||||||||||||||    
T  24183832 catttttattttattagaggcctatttttgattgagagccgagcctccaaatatatagggacggccctg 24183764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 30899932 - 30899972
Alignment:
Q  98 ctattttaaatagagagccgagcctcctatttcatagggac 138  Q
    |||||||||| |||||||||| |||||||||||| ||||||    
T  30899932 ctattttaaaaagagagccgaacctcctatttcacagggac 30899972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 135
Target Start/End: Original strand, 99097 - 99222
Alignment:
Q  12 gtttcgtgtttagaagctcttctgattctgattttttaataaagcttagctac--acnnnnnnnttgcatttttattttattggggacctattttaaata 109  Q
    ||||| |||||||||| ||||||||||||||||||||||| |||  |||||||  |        |||||||||||||||| || || ||||||||||| |    
T  99097 gtttcatgtttagaagttcttctgattctgattttttaatgaaggctagctacaaaaaaaaaaattgcatttttattttactgagggcctattttaaaaa 99196  T
Q  110 gagagccgagcctcctatttcatagg 135  Q
    ||||   |||||||||||||||||||    
T  99197 gagatttgagcctcctatttcatagg 99222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 16948 - 16897
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttca 131  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||||||||||    
T  16948 ttttattttattaggggcctattttaaaaagagagccgagcctcctatttca 16897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 1311 - 1376
Alignment:
Q  80 ttttattttattggggacctattttaaatagagagccgagcctcctatttcatagggacggccctg 145  Q
    |||||||||| | || || ||||||||| |||||||||||||||||||||||  ||||||||||||    
T  1311 ttttattttactaggaacttattttaaaaagagagccgagcctcctatttcacggggacggccctg 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 22688 - 22633
Alignment:
Q  13 tttcgtgtttagaagctcttctgattctgatt--ttttaataaagcttagctacac 66  Q
    |||| |||||||||| ||||||||||||||||  ||||||||||  ||||||||||    
T  22688 tttcatgtttagaagttcttctgattctgattttttttaataaaatttagctacac 22633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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