View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9009_low_14 (Length: 495)

Name: NF9009_low_14
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9009_low_14
NF9009_low_14
[»] chr1 (2 HSPs)
chr1 (223-481)||(48981448-48981706)
chr1 (18-197)||(48981242-48981422)
[»] chr6 (2 HSPs)
chr6 (223-481)||(16248656-16248915)
chr6 (18-197)||(16248941-16249121)
[»] chr2 (2 HSPs)
chr2 (426-484)||(3813611-3813668)
chr2 (426-484)||(42945781-42945838)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 223 - 481
Target Start/End: Original strand, 48981448 - 48981706
Alignment:
Q  223 caattgtgaatttcggattcaatgtttcaactattcaaggtgggtttaccgtatgcatatcctctgtctacataaaagctgcaaaacttgggtttacagc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  48981448 caattgtgaatttcggattcaatgtttcaactattcaaggtgggtttaccgtatgcatatcctctatctacataaaagctgcaaaacttgggtttacggc 48981547  T
Q  323 ggcaaataaaaattgatgcgttccagatctaattaactcggttttcttggtttcggtggtnnnnnnnnnttacagtctttgaacagccgagaaaggaggc 422  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| | ||||||||||||    
T  48981548 ggcaaataaaaatggatgcgttccagatctaattaactcggttttcttggtttcggtggaagaaaaaaattacagtctttgaacaactgagaaaggaggc 48981647  T
Q  423 tatagccacattcttcacactatccattgattcaacaaagattaaagtgattggtgttg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  48981648 tatagccacattcttcacactatccattgattcaacaaagattaaagtgatcggtgttg 48981706  T

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Target: chr1; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 48981242 - 48981422
Alignment:
Q  18 attaagataagtagaaaaagtatgataaattaacccagaaattgctagctgttgagccttctttaacaacccagtgttttctttgaaaatatatcttggc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48981242 attaagataagtagaaaaagtatgataaattaacccagaaattgctagctgttgagccttctttaacaacccagtgttttctttgaaaatatatcttggc 48981341  T
Q  118 tcttattagaatcttcaacactttatctcaatctttccaataccca-tttttatttctcaaaattcacagacccaattgct 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  48981342 tcttattagaatcttcaacactttatctcaatctttccaatacccattttttatttctcaaaattcacagacccaattgct 48981422  T

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Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 223 - 481
Target Start/End: Complemental strand, 16248915 - 16248656
Alignment:
Q  223 caattgtgaatttcggattcaatgtttcaactattcaaggtgggtttaccgtatgcatatcctctgtctacataaaagctgcaaaacttgggtttacagc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  16248915 caattgtgaatttcggattcaatgtttcaactattcaaggtgggtttaccgtatgcatatcctctatctacataaaagctgcaaaacttgggtttacggc 16248816  T
Q  323 ggcaaataaaaattgatgcgttccagatctaattaactcggttttcttggtttcggtgg-tnnnnnnnnnttacagtctttgaacagccgagaaaggagg 421  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||| | |||||||||||    
T  16248815 ggcaaataaaaatggatgcgttccagatctaattaactcggttttcttggtttcggtggaaaaaaaaaaattacagtctttgaacaactgagaaaggagg 16248716  T
Q  422 ctatagccacattcttcacactatccattgattcaacaaagattaaagtgattggtgttg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16248715 ctatagccacattcttcacactatccattgattcaacaaagattaaagtgattggtgttg 16248656  T

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Target: chr6; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 16249121 - 16248941
Alignment:
Q  18 attaagataagtagaaaaagtatgataaattaacccagaaattgctagctgttgagccttctttaacaacccagtgttttctttgaaaatatatcttggc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16249121 attaagataagtagaaaaagtatgataaattaacccagaaattgctagctgttgagccttctttaacaacccagtgttttctttgaaaatatatcttggc 16249022  T
Q  118 tcttattagaatcttcaacactttatctcaatctttccaatacccat-ttttatttctcaaaattcacagacccaattgct 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  16249021 tcttattagaatcttcaacactttatctcaatctttccaatacccattttttatttctcaaaattcacagacccaattgct 16248941  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 484
Target Start/End: Original strand, 3813611 - 3813668
Alignment:
Q  426 agccacattcttcacactatccattgattcaacaaagattaaagtgattggtgttgatg 484  Q
    |||||||| |||||| ||||||||||||| ||  |||||||||||||| ||||||||||    
T  3813611 agccacatccttcactctatccattgattgaa-gaagattaaagtgataggtgttgatg 3813668  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 484
Target Start/End: Complemental strand, 42945838 - 42945781
Alignment:
Q  426 agccacattcttcacactatccattgattcaacaaagattaaagtgattggtgttgatg 484  Q
    |||||||| |||||| ||||||||||||| || || |||||||||||| ||||||||||    
T  42945838 agccacatccttcactctatccattgattgaagaa-gattaaagtgataggtgttgatg 42945781  T

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