View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_15 (Length: 467)
Name: NF9009_low_15
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 31728307 - 31727856
Alignment:
| Q |
1 |
taacaacaaaggtagtaggttgagcaaagctaatttttgtcgaccgagataataacacaaactttttctctaatattcataattaagtactttacaacac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31728307 |
taacaacaaaggtagtaggttgagcaaagctaatttttgtcaaccgagataataacataaactttttctctaatattcgtaattaagtactttacaacac |
31728208 |
T |
|
| Q |
101 |
acacttctatcctacatcgccctttatgggaatgcatgttactttcctaatcgatattggtattcctcattctcattaggaaaccaaattctggattgcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31728207 |
acacttctatcctacatcgccctttatgggaatgcatgttactttcctaatcgatatttgtattcctcattctcattaggaaaccaaattctggattgcc |
31728108 |
T |
|
| Q |
201 |
aaaaattcaaactaaacttattcaagttaattgttttcttggcgcagtggctactagcactctagtcgtagcgttgttaaccctttttgcatctaagaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
31728107 |
aaaaattcaaactaaacttattcaagttaattgttttcttggcgcagtggctactagcactctagtcgtagcattggtaaccctttttgcatctaagaac |
31728008 |
T |
|
| Q |
301 |
tccagcaccaacagtcattgaagccacaagcataggtggttgtgctgacatacttgaggctttggcatatgtcgaagaagatgctcccgcttcagacggt |
400 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31728007 |
tccagcaccagcagtcattgaagccacaagcataggtggtcgtgctgacatacttgaggctttggcatatgtcgaagaagatgctcccgctccagacggt |
31727908 |
T |
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| Q |
401 |
gtgaaataggcaccattcaacattagatctccttcagatctctagtcaagtt |
452 |
Q |
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| T |
31727907 |
gtgaaataggcaccattcaatattagatctccttcagatctccagtccagtt |
31727856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 52 - 442
Target Start/End: Complemental strand, 39083421 - 39083035
Alignment:
| Q |
52 |
ataacacaaactttttctctaatattcataattaagtactttacaacacacacttctatcctacatcgccctttatgggaatgcatgttactttcctaat |
151 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||| ||||| |
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| T |
39083421 |
ataacaaaaactttttctctaatatttgtaattacgtactttacaatacacacttctatcctacattgccctttatgggaatgcacgtcacttttctaat |
39083322 |
T |
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| Q |
152 |
cgatattggtattcctcattctcattaggaaaccaaattctggattgccaaaaattcaaactaaacttattcaagttaattgttttcttggcgcagtggc |
251 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||| || |||||| || |||||||||||||||| || ||||| |
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| T |
39083321 |
agatattgatattcctcattctcattaggaaaccaaattctggaatgcaaaaatttctaaacaaacttttttaagttaattgttttctcggaacagtga- |
39083223 |
T |
|
| Q |
252 |
tactagcactctagtcgtagcgttgttaaccctttttgcatctaagaactccagcaccaacagtcattgaagccacaagcataggtggttgtgctgacat |
351 |
Q |
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|| || |||||| ||||| ||| |||||||||||||||||||| |||||||| || | ||||||||||||||||||||||||||| |||||||||| |
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| T |
39083222 |
---taccaatctagtagtagcattggtaaccctttttgcatctaagcactccagctcctgctgtcattgaagccacaagcataggtggtcgtgctgacat |
39083126 |
T |
|
| Q |
352 |
acttgaggctttggcatatgtcgaagaagatgctcccgcttcagacggtgtgaaataggcaccattcaacattagatctccttcagatctc |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39083125 |
gcttgaggctttggcatatgtcgaagaagatgctcccgctccagacggtgtgaagtaggcaccattcaacattagatctccttcagatctc |
39083035 |
T |
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