View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9009_low_18 (Length: 420)
Name: NF9009_low_18
Description: NF9009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9009_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 412
Target Start/End: Complemental strand, 6490809 - 6490420
Alignment:
| Q |
19 |
aattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacacggacttgtttttactgtacaggaactaaatattgcaacatgttaac |
118 |
Q |
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| T |
6490809 |
aattgtacgtcaaagttaaacaatcatgtatacaagattagaagtagaagacatggacttgtttttactgtacatgaactaaatattgcaacatgttaac |
6490710 |
T |
|
| Q |
119 |
ggaagacacaattttctgctccaatatcaagcatagaaatattaatcctagccacataaacttctgctctatcagtttcaacttatagtctgtctgaact |
218 |
Q |
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| T |
6490709 |
ggaagacgcaattttctgctccaatatcaagcatagaaatattaatcctagccacataaacttctgctctatcagtttcaacttatagtctg----aact |
6490614 |
T |
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| Q |
219 |
tgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaacaaattccaagacactaaactagctccagagtccagaaaaat |
318 |
Q |
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| T |
6490613 |
tgttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaacaaattccaagacactaaactagctccagagtccagaaaaat |
6490514 |
T |
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| Q |
319 |
aatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgtctct |
412 |
Q |
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| T |
6490513 |
aatcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgtctct |
6490420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 27 - 408
Target Start/End: Original strand, 38699876 - 38700257
Alignment:
| Q |
27 |
gtcaaagttaaacaatcatgtatacaagattagaagtagaagacacggacttgtttttactgtacaggaactaaatattgcaacatgttaacggaagaca |
126 |
Q |
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| T |
38699876 |
gtcaaagttaaacaatcatgtata--agattagaagttgaagacacggacttgtttttactgtag-ggaactcaatattgcagcatgttaacggaagacg |
38699972 |
T |
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| Q |
127 |
caattttctgctccaatatcaagcatagaaatattaatcctag------ccacataaacttctgctctatcagtttcaacttatagtctgtctgaacttg |
220 |
Q |
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| T |
38699973 |
caattttctgctccaatctcaagcatagaaatattaaccctaggcctagccacataaatttctgcactatcagtttcaatttatagcctgac---acttg |
38700069 |
T |
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| Q |
221 |
ttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaacaaattccaagacactaaactagctccagagtccagaaaaataa |
320 |
Q |
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| T |
38700070 |
ttttcttgaaagcattttctatttcccttcaaggtgttaaaattcattactgcaaatcaattccaagacactaaactagctccagagtccagaaaaataa |
38700169 |
T |
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| Q |
321 |
tcaccacaaagccaaaacagtttggttcactaaatcaacttcaccgcagatccttacttaaatcatagaaaacccatctaccttttgt |
408 |
Q |
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|||||| ||||||| ||||||||||||| |||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38700170 |
tcaccataaagccacaacagtttggttctctaaataaccttcaccacagatccttacttaaatcatagaaaacccatctaccttttgt |
38700257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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